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Thiocyanate Bioreactor Organisms
Raw
.block
license: gpl-3.0
border: no
height: 960
Raw
README.md
Raw
index.html
<!DOCTYPE html>
<meta charset="utf-8">
<style>
body {
margin: 20px 0;
}
.node circle {
fill: #555;
}
.node--leaf circle {
fill: #bbb;
}
.node text {
font: 12px sans-serif;
text-shadow: 0 1px 0 #fff, 0 -1px 0 #fff, 1px 0 0 #fff, -1px 0 0 #fff;
}
.node--leaf text {
display: none;
}
.link {
fill: none;
stroke: #bbb;
stroke-opacity: 0.4;
stroke-width: 1.5px;
}
</style>
<body>
<script src="//d3js.org/d3.v4.0.0-alpha.29.js"></script>
<script>
var width = 960,
height = 920;
var burrow = function(table) {
var obj = {};
table.forEach(function(row) {
var layer = obj;
var tokenized = row.taxonomy.split(",").reverse().map(function(d) { return d.trim(); });
tokenized.push(row.name);
tokenized.forEach(function(key) {
layer[key] = key in layer ? layer[key] : {};
layer = layer[key];
});
});
var descend = function(obj, depth) {
var arr = [];
var depth = depth || 0;
for (var k in obj) {
var child = {
name: k,
depth: depth,
children: descend(obj[k], depth+1)
};
arr.push(child);
}
return arr;
};
return {
name: "Bioreactor",
children: descend(obj, 1),
depth: 0
}
};
var tree = d3.tree()
.size([height, width - 180])
var svg = d3.select("body").append("svg")
.attr("width", width)
.attr("height", height)
.append("g")
.attr("transform", "translate(76,0)");
d3.tsv("thiocyanate-organisms.tsv", function(error, data) {
if (error) throw error;
var root = d3.hierarchy(burrow(data));
tree(root);
var link = svg.selectAll(".link")
.data(root.descendants().slice(1))
.enter().append("path")
.attr("class", "link")
.attr("d", function(d) {
return "M" + d.y + "," + d.x
+ "C" + (d.y + d.parent.y) / 2 + "," + d.x
+ " " + (d.y + d.parent.y) / 2 + "," + d.parent.x
+ " " + d.parent.y + "," + d.parent.x;
});
var node = svg.selectAll(".node")
.data(root.descendants().reverse()) // reversing prevents children occluding parent text
.enter().append("g")
.attr("class", function(d) { return "node" + (d.children ? " node--internal" : " node--leaf"); })
.attr("transform", function(d) { return "translate(" + d.y + "," + d.x + ")"; })
node.append("circle")
.attr("r", 2);
node.append("text")
.attr("dy", 3)
.attr("x", function(d) { return d.depth > 0 ? 5 : -5; })
.style("text-anchor", function(d) { return d.depth > 0 ? "start" : "end"; })
.text(function(d) { return d.data.name; });
});
</script>
Raw
thiocyanate-organisms.tsv
name code taxonomy description bin length GC% coverage # contigs # features longest contig RP Inventory (total: 55) RP multiple BSCG Inventory (total: 51) BSCG multiple ASCG Inventory (total: 38) ASCG multiple curation status completion status
CN-SCN_Acidobacteria_32xOld CN-SCN_Acidobacteria_69_32 Acidobacteria Full 52 4553318 68.51 32.04 37 4033 566951 52 2 48 1 12 0 Uncurated genome near complete
CN-SCN_Acidovorax_108x CN-SCN_Burkholderiales_65_107 Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria Partial 43 5127362 64.63 107.44 190 4875 184606 41 2 39 12 10 2 Uncurated genome partial
CN-SCN_Acidovorax_22x CN-SCN_Burkholderiales_68_22 Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria Partial 30 2939015 67.74 22.48 223 2947 50236 41 1 43 3 10 1 Uncurated genome near complete
CN-SCN_Leifsonia_139xOld CN-SCN_Micrococcales_70_141 Micrococcales, Actinobacteria, Actinobacteria, Bacteria Outdated. Genome has been curated. 3119412 70.37 141.09 2 3200 2334969 52 0 48 0 13 0 Uncurated genome near complete
CN-SCN_Agrobacterium_19x CN-SCN_Agrobacterium_albertimagni_61_21 Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria Full 45 4475018 61.39 20.87 47 4364 437269 45 1 46 1 11 1 Uncurated genome near complete
CN-SCN_OPB56_209xOld CN-SCN_Bacteria_59_191 Bacteria Outdated. Genome has been curated. 3310759 59.03 190.89 18 2791 951833 52 3 47 0 13 0 Uncurated genome near complete
CN-SCN_Bdellovibrio_8x CN-SCN_Bdellovibrio_50_8 Bdellovibrio, Bacteria Fragment 1 120770 50.27 8.44 19 118 9092 1 0 0 0 1 0 Uncurated genome partial
CN-SCN_Bordetella_23x CN-SCN_Burkholderiales_67_23 Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria Partial double 67 6725326 67.22 22.82 187 6544 166523 51 6 49 4 12 2 Uncurated genome near complete
CN-SCN_Comamonas_56x CN-SCN_Burkholderiales_65_60 Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria Full 47 3598246 65.2 59.59 51 3497 610097 48 0 48 0 14 1 Uncurated genome near complete
CN-SCN_Lautropia_89x CN-SCN_Burkholderiales_69_89 Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria Full 50 3808117 69.04 88.98 70 3732 262282 50 1 49 3 12 0 Uncurated genome near complete
CN-SCN_Cytophagaceae_12x CN-SCN_Cytophagales_52_12 Cytophagales, Cytophagia, Bacteroidetes, Bacteria Partial 37 5120376 52.16 12.29 274 4262 117394 38 0 38 0 12 0 Uncurated genome partial
CN-SCN_Erythrobacter_10x CN-SCN_Sphingomonadales_68_10 Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria Fragment 5 377526 67.95 9.72 57 418 14827 5 1 4 0 2 0 Uncurated genome partial
CN-SCN_Eukaryote_25x CN-SCN_unknown_57_26 Eukaryote 9514613 56.71 25.98 749 11462 102742 32 14 10 4 21 10 Uncurated genome partial
CN-SCN_Eukaryote_66x CN-SCN_unknown_62_65 Eukaryote 34916453 61.88 64.86 714 16776 337331 40 25 21 3 27 14 Uncurated genome partial
CN-SCN_Chryseobacterium_13x CN-SCN_Flavobacteriales_40_18 Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria Double partial 75 4864585 39.71 18.39 246 4816 227997 52 23 50 25 15 11 Uncurated genome megabin
CN-SCN_Gemmatimonadetes_22x CN-SCN_Gemmatimonadetes_70_23 Gemmatimonadetes, Bacteria Full 52 4697473 70.18 22.61 84 4032 358948 52 0 50 0 14 0 Uncurated genome near complete
CN-SCN_Hydrogenophaga_13x CN-SCN_Hydrogenophaga_sp__PBC_70_13 Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria Partial 43 2719868 70.06 13.45 290 2862 39773 44 0 47 0 11 0 Uncurated genome near complete
CN-SCN_Hyphomicrobium_11x CN-SCN_Alphaproteobacteria_65_11 Alphaproteobacteria, Proteobacteria, Bacteria Partial 36 3729702 64.58 11.29 397 3804 35720 36 0 36 1 5 1 Uncurated genome partial
CN-SCN_Mesorhizobium_20x CN-SCN_Mesorhizobium_65_20 Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria Partial 41 3678872 64.63 19.9 136 3711 133132 41 2 38 2 12 1 Uncurated genome partial
CN-SCN_Microbacterium_18x CN-SCN_Microbacterium_70_18 Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria Partial 35 3055905 70.0 17.71 91 3017 141669 35 2 33 0 10 0 Uncurated genome partial
CN-SCN_Microbacterium_200x CN-SCN_Microbacterium_70_193 Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria Partial 37 3077261 69.63 193.37 33 2887 305265 37 2 36 1 11 0 Uncurated genome partial
CN-SCN_Microbacterium_37x CN-SCN_Microbacterium_69_37 Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria Partial 35 2994243 69.4 37.09 69 2942 208434 35 3 32 2 10 0 Uncurated genome partial
CN-SCN_Niabella_15x CN-SCN_Niabella_42_16 Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria Fragment 8 894739 42.25 15.98 73 818 31373 8 0 10 3 6 0 Uncurated genome partial
CN-SCN_Nitrospira_13x CN-SCN_Candidatus_Nitrospira_defluvii_59_14 Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria Partial 10 1822445 59.06 13.71 212 1844 23120 10 0 12 0 4 1 Uncurated genome partial
CN-SCN_Paldudibacter_10x CN-SCN_Bacteroidales_50_11 Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria Partial 6 1331137 50.23 10.61 123 1064 46811 6 0 6 0 4 0 Uncurated genome partial
CN-SCN_Paracoccus_21x CN-SCN_Paracoccus_sp__361_68_21 Paracoccus sp. 361, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria Full 50 3375827 67.91 21.23 87 3372 162463 50 1 50 0 11 1 Uncurated genome near complete
CN-SCN_Pelagibacterium_126x CN-SCN_Devosia_63_127 Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria Full 47 4043057 62.72 126.89 16 3941 1670652 47 5 45 3 12 0 Uncurated genome near complete
CN-SCN_Pelagibacterium_23x CN-SCN_Devosia_63_23 Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria Partial double 77 7074274 62.79 23.3 110 6984 399667 45 34 43 32 13 11 Uncurated genome megabin
CN-SCN_Pelagibacterium_44x CN-SCN_Devosia_64_44 Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria Partial double 90 8149182 64.42 43.89 111 8007 352511 51 39 50 37 13 11 Uncurated genome megabin
CN-SCN_Phage_236x CN-SCN_Proteobacteria_62_246 Mobile_element 2365824 61.99 245.76 114 2956 112113 0 0 0 0 0 0 Uncurated genome partial
CN-SCN_Phenylobacterium_14x CN-SCN_Caulobacterales_69_14 Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria Partial 44 2685392 69.19 13.94 245 2861 40951 44 2 42 2 7 0 Uncurated genome near complete
CN-SCN_Phenylobacterium_31x CN-SCN_RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated_70_30 RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria Full 52 4891460 69.52 30.31 61 4806 460761 52 2 51 0 10 0 Uncurated genome near complete
CN-SCN_Planctomycetes_9x CN-SCN_Planctomycetales_63_9 Planctomycetales, Planctomycetia, Planctomycetes, Bacteria Partial 10 1751530 63.09 9.16 257 1650 16820 12 0 9 0 4 0 Uncurated genome partial
CN-SCN_Plasmids_251x CN-SCN_Proteobacteria_61_324 Mobile_element 1613503 61.16 323.5 70 1834 143908 0 0 0 0 0 0 Uncurated genome partial
CN-SCN_Plasmid_191x CN-SCN_Proteobacteria_63_186 Mobile_element 1675013 62.74 185.85 82 1774 107804 2 0 2 0 0 0 Uncurated genome partial
CN-SCN_Pseudonocardia_51x CN-SCN_Pseudonocardia_dioxanivorans_72_52 Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria Partial 9 5468042 72.42 52.07 408 5682 137809 9 1 8 1 4 0 Uncurated genome partial
CN-SCN_Pseudonocardia_86x CN-SCN_Pseudonocardia_dioxanivorans_72_87 Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria Partial 14 6554597 72.03 86.84 396 6738 218343 15 1 14 2 7 1 Uncurated genome partial
CN-SCN_Rhodospirillales_16x CN-SCN_RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated_65_16 RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria Partial 42 1226123 65.49 16.06 128 1297 28327 42 0 41 0 9 0 Uncurated genome near complete
CN-SCN_Sphingobium_10x CN-SCN_Sphingobium_64_10 Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria Partial 6 1292915 64.39 9.67 190 1422 13432 17 0 15 0 2 1 Uncurated genome partial
CN-SCN_Sphingopyxis_31x CN-SCN_Sphingopyxis_67_31 Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria Partial double 70 5144417 66.53 31.29 232 5000 194064 48 32 47 31 12 5 Uncurated genome megabin
CN-SCN_Thiobacillus_35x CN-SCN_Hydrogenophilales_64_36 Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria Strain variant 1 rps 777841 63.55 35.7 85 785 37350 1 0 4 2 2 0 Uncurated genome partial
CN-SCN_Variovorax_85x CN-SCN_Variovorax_67_87 Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria Full 50 7712539 67.38 86.91 61 7151 752513 50 2 49 0 14 2 Uncurated genome near complete
CN-SCN_Verrucomicrobia_15x CN-SCN_Bacteria_57_18 Verrucomicrobia Fragment 9 758781 56.99 17.57 74 804 82484 9 0 9 0 1 0 Uncurated genome partial
CN-SCN_Xanthomonadaceae_48x CN-SCN_Xanthomonadales_69_49 Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria Partial double 6 and 6 3652135 68.82 49.15 344 3771 56078 7 4 10 6 6 3 Uncurated genome partial
CN-SCN_Rhodanobacter_45x CN-SCN_Rhodanobacter_67_47 Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria Full 52 4042570 67.2 47.47 218 3848 132739 52 1 51 1 12 0 Uncurated genome near complete
CN-SCN_Rubrivivax_131x CN-SCN_Burkholderiales_71_127 Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria Full 50 3916131 70.78 127.39 43 3678 347930 50 2 49 0 12 0 Uncurated genome near complete
CN-SCN_Thiobacillus_1177x CN-SCN_Hydrogenophilales_63_1145 Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria Partial multiple 15 1814258 63.32 1145.41 190 2040 44944 13 2 12 2 4 0 Uncurated genome partial
CN-SCN_Thiobacillus_374x CN-SCN_Hydrogenophilales_63_377 Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria Partial multiple 35 3274387 63.2 376.65 291 3470 100057 33 2 33 4 8 0 Uncurated genome partial
CN-SCN_Thiobacillus_729x CN-SCN_Hydrogenophilales_62_727 Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria Partial 25 887785 61.86 727.26 83 995 44289 25 0 24 0 3 1 Uncurated genome partial
CN-SCN_Xanthomonadaceae_123x CN-SCN_Xanthomonadales_69_122 Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria Full double 51 and 52 8489846 69.05 122.41 81 7252 547839 52 52 51 51 13 12 Uncurated genome megabin
CN-SCN_Xanthomonadaceae_320x CN-SCN_Xanthomonadales_69_316 Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria 5712948 68.63 315.86 30 4807 845194 52 0 51 0 13 0 Uncurated genome near complete
CN-SCN_Nitrosomonadales_20x CN-SCN_Nitrosospira_multiformis_54_21 Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria Partial double 47 4998927 54.19 20.77 379 4868 87463 30 17 33 23 11 8 Uncurated genome partial
CN-SCN_Unknown CN_SCN_UNK Proteobacteria, Bacteria 6522796 62.39 53.61 693 7090 51825 13 2 15 2 5 0 Uncurated genome partial
CN-SCN_OPB56_209x CN-SCN_Bacteria_59_241 Bacteria 3250369 59.45 241.33 24 2711 951895 52 3 47 0 13 0 Manually curated genome near complete
CN-SCN_Leifsonia_139x CN-SCN_Micrococcales_70_151 Micrococcales, Actinobacteria, Actinobacteria, Bacteria 3122347 70.36 150.55 2 3185 2529134 52 0 48 0 13 0 Manually curated genome near complete
CN-SCN_Kaistia-multi_12x CN-SCN_Rhizobiales_65_12 Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria Partial double/triple 74 9380969 65.0 12.49 1015 9873 61188 35 30 36 33 11 5 Uncurated genome partial
CN-SCN_Plasmid_17x CN-SCN_Nitratireductor_63_17 Mobile_element 53710 63.05 16.71 1 51 53710 0 0 0 0 0 0 Uncurated genome partial
CN-SCN_Erythrobacter_14x CN-SCN_Sphingomonadales_62_14 Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria Partial 38 2802712 61.96 13.72 136 2751 128951 39 0 38 2 12 1 Uncurated genome partial
CN-SCN_Sphingomonas_18x CN-SCN_Sphingomonas_67_19 Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria Full 47 3220613 66.77 18.66 79 3184 211885 47 1 45 2 12 0 Uncurated genome near complete
CN-SCN_Thiobacillus_2499x CN-SCN_Hydrogenophilales_66_2548 Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria 69307 65.98 2547.8 6 88 22201 0 0 1 0 0 0 Uncurated genome partial
CN-SCN_Acidovorax_28x CN-SCN_Acidovorax_sp__KKS102_65_28 Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria Partial 23 4318128 65.19 27.88 231 4103 111348 22 2 22 5 9 3 Uncurated genome partial
CN-SCN_Transposase_165x CN-SCN_Proteobacteria_61_169 Mobile_element 264048 61.32 169.16 20 282 38825 0 0 0 0 0 0 Uncurated genome partial
CN-SCN_Sphingobacteriales_20x CN-SCN_Sphingobacteriales_48_22 Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria Partial 40 3748489 48.39 21.63 153 3325 108818 40 0 38 0 9 0 Uncurated genome partial
CN-SCN_Niastella_18x CN-SCN_Sphingobacteriales_39_22 Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria Full 52 3217442 39.31 21.68 51 2889 280950 52 2 50 2 13 1 Uncurated genome near complete
CN-SCN_Novel_11x CN-SCN_Bacteria_62_11 Bacteria 4751384 61.72 10.86 540 4808 43922 17 0 18 1 5 0 Uncurated genome partial
CN-SCN_Mitochondria_25x CN-SCN_unknown_33_26 Eukaryote 69578 32.9 25.57 2 81 55507 7 2 6 2 0 0 Uncurated genome partial
CN-SCN_Mitochondria_80x CN-SCN_unknown_31_78 Eukaryote 47008 31.14 77.5 2 69 35736 10 0 4 0 0 0 Uncurated genome partial
CN-SCN_Microbacterium_17x CN-SCN_Microbacterium_testaceum_71_17 Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria Partial 41 3503751 70.71 16.67 154 3455 102462 41 5 38 2 12 0 Uncurated genome partial
CN-SCN_Plasmid_595x CN-SCN_Micrococcales_67_568 Mobile_element 112382 66.88 567.77 3 123 67683 0 0 0 0 0 0 Uncurated genome partial
CN-SCN_Microbacterium_27x CN-SCN_Microbacterium_70_27 Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria Partial 27 2654246 70.04 26.5 69 2542 137999 26 1 28 1 11 1 Uncurated genome partial
CN-SCN_Devosia_27x CN-SCN_Devosia_66_27 Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria Partial 45 5331592 65.74 27.09 254 5418 177452 23 2 28 4 10 0 Uncurated genome partial
CN-SCN_Mesorhizobium_12x CN-SCN_Mesorhizobium_65_12 Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria Partial 17 4439784 64.92 11.88 453 4621 37352 17 0 16 1 7 1 Uncurated genome partial
CN-SCN_PLAS_81x CN-SCN_Actinobacteria_73_82 Mobile_element 90929 72.9 82.16 2 100 51898 0 0 0 0 0 0 Uncurated genome partial
CN-SCN_Arenimonas_307x CN-SCN_Arenimonas_70_305 Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria Full 51 2928465 70.26 305.39 35 2756 640567 52 0 51 5 12 1 Uncurated genome near complete
CN-SCN_Plasmid_116x CN-SCN_Burkholderiales_61_116 Mobile_element 99566 61.34 116.38 4 102 41640 0 0 0 0 0 0 Uncurated genome partial
CN-SCN_Alphaproteobacteria_unknown CN-SCN_Alphaproteobacteria_63_20 Alphaproteobacteria, Proteobacteria, Bacteria 5862011 63.27 19.95 430 6013 127165 15 7 14 7 4 1 Uncurated genome partial
CN-SCN_Methylobacterium_24x CN-SCN_Bosea_sp__LC85_67_24 Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria Partial 24 4931609 67.08 24.03 304 4981 102084 45 0 45 2 10 0 Uncurated genome near complete
CN-SCN_Pseudonocardia_304x_mobile_elements CN-SCN_Pseudonocardia_dioxanivorans_69_302 Mobile_element 86318 68.84 301.89 3 95 35049 0 0 0 0 0 0 Uncurated genome partial
CN-SCN_Acidobacteria_32x CN-SCN_Acidobacteria_68_37 Acidobacteria 4432721 68.48 37.24 25 3938 567474 52 2 48 1 12 0 Manually curated genome near complete
CN-SCN_Plasmid_4851x CN-SCN_Proteobacteria_64_4833 Mobile_element 38824 63.68 4833.34 4 57 10800 0 0 0 0 0 0 Uncurated genome partial
CN-SCN_Mobile_154x CN-SCN_Micrococcales_67_148 Mobile_element 60683 67.13 147.77 2 66 50878 0 0 0 0 0 0 Uncurated genome partial
CN-SCN_Lautropia_15x CN-SCN_Burkholderiales_70_15 Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria double partial 2716492 69.94 14.7 272 2873 38768 20 1 22 6 11 0 Uncurated genome partial
CN-SCN_Eukaryote_unknown CN-SCN_Proteobacteria_62_102 Eukaryote 170872 62.34 101.88 18 154 19286 0 0 0 0 0 0 Uncurated genome partial
SCN_Unknown SCN_UNK Proteobacteria, Bacteria 2038556 63.48 23.51 227 2213 58131 2 0 0 0 0 0 Uncurated genome partial
SCN_Granulicella_9x SCN-stock_Granulicella_62_9 Acidobacteria Partial 22, connected 1054065 61.97 9.41 137 1032 19621 22 2 16 0 2 1 Uncurated genome partial
SCN_Comamonas_36x SCN-stock_Burkholderiales_67_35 Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria Full 51, connected 3359189 66.55 35.37 38 3189 370557 52 0 51 0 14 0 Uncurated genome near complete
SCN_Comamonadaceae_20x SCN-stock_Burkholderiales_68_20 Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria Full 49 4848040 68.34 19.93 108 4447 284535 52 1 51 0 14 1 Uncurated genome near complete
SCN_Paludibacter_9x SCN-stock_Bacteroidales_51_9 Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria Fragment 391599 51.24 8.68 52 334 22987 2 0 0 0 0 0 Uncurated genome partial
SCN_Clostridium_9x SCN-stock_Clostridiales_57_10 Clostridiales, Clostridia, Firmicutes, Bacteria Partial 39, connected 1736938 56.66 9.56 159 1922 41191 42 4 42 3 9 1 Uncurated genome near complete
SCN_Microbacterium_10x SCN-stock_Microbacterium_testaceum_70_10 Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria Partial 5 1170445 70.37 10.44 160 1227 18187 6 1 7 1 1 0 Uncurated genome partial
SCN_Novosphingobium_B_17x SCN-stock_Novosphingobium_sp__MD_1_66_18 Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria Full 51 4567371 65.94 17.53 81 4350 352977 51 1 50 2 10 0 Uncurated genome near complete
SCN_Pseudonocardia_26x SCN-stock_Pseudonocardia_dioxanivorans_73_27 Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria Full 52, connected 6952598 72.61 27.01 99 6860 300663 52 6 49 1 14 1 Uncurated genome near complete
SCN_Acetobacteraceae_10x SCN-stock_Alphaproteobacteria_69_10 Alphaproteobacteria, Proteobacteria, Bacteria Partial 31, connected 2100738 68.85 10.34 279 2315 35642 30 0 30 1 4 0 Uncurated genome partial
SCN_Pelagibacterium_10x SCN-stock_Devosia_68_10 Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria Partial 12 330916 67.96 10.49 43 360 19467 14 0 12 0 1 0 Uncurated genome partial
SCN_Thiobacillus_184x_old SCN-stock_Hydrogenophilales_64_193 Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria Outdated, see SCN_Thio_153x. 3520441 64.26 193.11 69 3642 936759 52 3 51 2 14 1 Uncurated genome near complete
SCN_Thiobacillus_53x SCN-stock_Hydrogenophilales_63_57 Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria Partial 40 2957592 63.04 56.95 59 2967 204043 41 1 40 0 12 0 Uncurated genome partial
SCN_Rhodanobacter_65x SCN-stock_Xanthomonadales_68_63 Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria Full 50 3439759 67.64 63.32 264 3540 212478 50 2 48 13 11 0 Uncurated genome megabin
SCN_Thiomonas_15x SCN-stock_Thiomonas_64_16 Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria Full 49, connected 3151999 64.13 15.72 93 3091 163934 49 3 49 1 10 0 Uncurated genome near complete
SCN_Variovorax_21x SCN-stock_Variovorax_67_20 Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria Full 52, connected 7722691 67.38 20.18 97 7176 537611 52 3 50 1 14 2 Uncurated genome near complete
SCN_Phage_general SCN-stock_Proteobacteria_63_50 Mobile_element 798941 62.61 49.77 49 1032 50124 0 0 0 0 0 0 Uncurated genome partial
SCN_Plasmid_general SCN-stock_Proteobacteria_63_97 Mobile_element 1797216 63.11 96.53 74 2015 215895 0 0 0 0 0 0 Uncurated genome partial
SCN_Transposon SCN-stock_Alphaproteobacteria_62_18 Mobile_element 82876 61.94 17.61 7 92 21769 0 0 0 0 0 0 Uncurated genome partial
SCN_Pelagibacterium_16x SCN-stock_Devosia_63_17 Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria Full 51, connected 3955844 62.78 16.64 79 3921 315487 51 3 49 2 12 1 Uncurated genome near complete
SCN_Thiobacillus_338x_old SCN-stock_Hydrogenophilales_63_336 Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria Outdated, see SCN_Thio_272x 987335 63.42 336.23 118 1111 22767 40 1 38 1 7 1 Uncurated genome partial
SCN_Plasmid_proteobacteria1 SCN-stock_Gammaproteobacteria_61_695 Mobile_element 115345 61.31 695.44 1 129 115345 0 0 0 0 0 0 Uncurated genome partial
SCN_Plasmid_pSB102-like SCN-stock_Proteobacteria_64_18 Mobile_element clear plasmid signature 40431 63.94 17.72 2 53 24895 0 0 0 0 0 0 Uncurated genome partial
SCN_Leifsonia_41xOld SCN-stock_Micrococcales_70_41 Micrococcales, Actinobacteria, Actinobacteria, Bacteria Outdated. Genome has been curated. 3119269 70.37 41.39 6 3208 867214 52 0 48 13 13 0 Uncurated genome megabin
SCN_Plasmid_pseudonocardia SCN-stock_Pseudonocardia_dioxanivorans_70_59 Mobile_element 114727 69.96 58.63 5 114 79071 0 0 0 0 0 0 Uncurated genome partial
SCN_Xanthomonadaceae_25x SCN-stock_Xanthomonadales_69_25 Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria Full 52, connected 5711127 68.67 25.24 68 4814 309092 52 0 51 1 13 0 Uncurated genome near complete
SCN_OPB56_Old SCN-stock_Bacteria_59_175 Bacteria Outdated. Genome has been curated. 3254726 59.46 175.38 33 2733 951707 53 13 47 0 13 0 Uncurated genome near complete
SCN_Phage_actino SCN-stock_Microbacterium_69_32 Mobile_element Has predicted phage proteins 44799 68.61 31.96 1 68 44799 0 0 0 0 0 0 Uncurated genome partial
SCN_Actinomycetales_mobile SCN-stock_Leifsonia_aquatica_67_87 Mobile_element contains mobile elements at high coverage 42650 67.2 86.82 1 52 42650 0 0 0 0 0 0 Uncurated genome partial
SCN_Rhodanobacter_mobile_271x SCN-stock_Rhodanobacter_63_269 Mobile_element Repeated regions and/or mobile elements 20215 63.19 268.91 3 23 7922 0 0 0 0 0 0 Uncurated genome partial
SCN_Rhodanobacter_43x SCN-stock_Xanthomonadales_66_43 Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria Full 48 3540356 65.79 43.39 28 3192 340614 52 2 51 2 12 0 Uncurated genome near complete
SCN_Rhodanobacter_33x SCN-stock_Rhodanobacter_69_32 Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria Partial 41 3541363 68.59 32.18 37 3151 414278 41 1 40 1 9 0 Uncurated genome partial
SCN_Rhodanobacter_17x SCN-stock_Xanthomonadales_66_17 Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria Fragment/strain variant 472134 65.5 17.29 31 425 39782 0 0 0 0 0 0 Uncurated genome partial
SCN_Plasmid_Rhizobiales SCN-stock_Rhizobiales_64_12 Mobile_element 33033 63.81 12.45 3 37 19408 0 0 0 0 0 0 Uncurated genome partial
SCN_Vermamoeba _mitochondria_11x SCN-stock_Vermamoeba_vermiformis_42_11 Vermamoeba vermiformis, Vermamoeba, Eukaryota 5552 41.64 10.61 1 11 5552 4 0 3 0 1 0 Uncurated genome partial
SCN_Rubrivivax_15x SCN-stock_Burkholderiales_70_15 Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria Full 48 4027625 70.4 15.43 267 4132 54865 48 4 48 2 12 0 Uncurated genome near complete
SCN_Bordetella_11x SCN-stock_Burkholderiales_68_11 Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria Partial 30 4799183 67.62 10.96 486 4998 47105 30 0 30 1 9 1 Uncurated genome partial
SCN_Novel_13x SCN-stock_Bacteria_57_13 Bacteria Fragment 3 816919 57.41 13.12 110 815 20484 4 0 2 0 1 0 Uncurated genome partial
SCN_Microbacterium_20x SCN-stock_Microbacterium_ginsengisoli_71_21 Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria Full 50 2638424 70.59 20.55 127 2648 80526 50 2 48 1 12 0 Uncurated genome near complete
SCN_Novosphingobium_A_17x SCN-stock_Novosphingobium_63_17 Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria Full 50 5923905 63.47 17.2 95 5459 573414 50 2 51 2 11 1 Uncurated genome near complete
SCN_Pseudonocardia_mobile2 SCN-stock_Pseudonocardiales_73_135 Mobile_element contains mobile elements at high coverage 47073 72.88 135.47 1 47 47073 0 0 0 0 0 0 Uncurated genome partial
SCN_Phage_1 SCN-stock_unknown_57_16 Mobile_element 20106 57.3 15.72 3 25 7802 0 0 0 0 0 0 Uncurated genome partial
SCN_Lautropia_9x SCN-stock_Burkholderiales_66_9 Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria Partial 21, connected 1657599 66.39 9.37 225 1812 21127 21 2 22 0 6 1 Uncurated genome partial
SCN_Sphingobacteriales_mobile SCN-stock_Novosphingobium_62_26 Mobile_element contains mobile elements 54917 62.19 26.47 4 72 17091 0 0 0 0 0 0 Uncurated genome partial
SCN_Plasmid_Burkholderiales SCN-stock_Burkholderiales_64_22 Mobile_element 77887 64.4 21.6 2 70 55537 0 0 0 0 0 0 Uncurated genome partial
SCN_Thiobacillus_338x SCN-stock_Hydrogenophilales_64_317 Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria Scaffolds binned from an assembly using 1/20th of all reads. 2628916 63.69 316.7 111 2751 94524 52 1 49 1 12 0 Manually curated genome near complete
SCN_Thiobacillus_184x SCN-stock_Hydrogenophilales_65_179 Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria Scaffolds binned from an assembly using 1/5 of all reads. 3052374 64.76 179.2 30 3092 936658 52 2 51 1 13 1 Manually curated genome near complete
SCN_Leifsonia_41x SCN-stock_Micrococcales_70_46 Micrococcales, Actinobacteria, Actinobacteria, Bacteria 3122347 70.36 46.2 2 3185 2529134 52 0 48 0 13 0 Manually curated genome near complete
SCN_OPB56_174x SCN-stock_Bacteria_59_161 Bacteria 3250369 59.45 160.51 24 2711 951895 52 3 47 0 13 0 Manually curated genome near complete
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