-
-
Save widged/1124347 to your computer and use it in GitHub Desktop.
Installing R on dreamhost
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
## First do the unix account setup http://wiki.dreamhost.com/Unix_account_setup | |
cd ${HOME} | |
# create the first level directories (and log/setup) | |
mkdir -pv soft run www log log/setup backup data | |
# create the second level directories within run (our own FHS) | |
for subdir in bin etc include lib man share | |
do | |
mkdir -pv run/${subdir} | |
done | |
# symlink so that man pages stay all in the same place | |
ln -sv ../man run/share/man | |
# symlink so that the apache logs are also found within log | |
ln -sv ../logs log/vhosts | |
mkdir -pv ${HOME}/.cpan/CPAN | |
cat > ${HOME}/.cpan/CPAN/MyConfig.pm <<eof | |
\$CPAN::Config = { | |
'auto_commit' => q[0], | |
'build_cache' => q[10], | |
'build_dir' => q[\$ENV{HOME}/.cpan/build], | |
'cache_metadata' => q[1], | |
'commandnumber_in_prompt' => q[1], | |
'cpan_home' => q[\$ENV{HOME}/.cpan], | |
'dontload_hash' => { }, | |
'ftp' => q[/usr/bin/ftp], | |
'ftp_passive' => q[1], | |
'ftp_proxy' => q[], | |
'getcwd' => q[cwd], | |
'gpg' => q[/usr/bin/gpg], | |
'gzip' => q[/bin/gzip], | |
'histfile' => q[\$ENV{HOME}/.cpan/histfile], | |
'histsize' => q[100], | |
'http_proxy' => q[], | |
'inactivity_timeout' => q[0], | |
'index_expire' => q[1], | |
'inhibit_startup_message' => q[0], | |
'keep_source_where' => q[\$ENV{HOME}/.cpan/sources], | |
'lynx' => q[/usr/bin/lynx], | |
'make' => q[/usr/bin/make], | |
'make_arg' => q[], | |
'make_install_arg' => q[], | |
'make_install_make_command' => q[/usr/bin/make], | |
'makepl_arg' => q[PREFIX=\$ENV{RUN}], | |
'mbuild_arg' => q[], | |
'mbuild_install_arg' => q[], | |
'mbuild_install_build_command' => q[./Build], | |
'mbuildpl_arg' => q[], | |
'ncftpget' => q[/usr/bin/ncftpget], | |
'no_proxy' => q[], | |
'pager' => q[less], | |
'prerequisites_policy' => q[follow], | |
'scan_cache' => q[atstart], | |
'shell' => q[/bin/bash], | |
'tar' => q[/bin/tar], | |
'term_is_latin' => q[0], | |
'term_ornaments' => q[1], | |
'unzip' => q[/usr/bin/unzip], | |
'urllist' => [q[ftp://cpan.cse.msu.edu/], q[ftp://cpan-du.viaverio.com/pub/CPAN/], q[ftp://cpan.mirrors.redwire.net/pub/CPAN/], q[ftp://cpan.hostrack.net/pub/CPAN]], | |
'use_sqlite' => q[0], | |
'wget' => q[/usr/bin/wget], | |
}; | |
1; | |
__END__ | |
eof | |
cat >>${HOME}/.bashrc <<eof | |
function pathmunge () { | |
if [ -d \$1 ] && ! echo $PATH | /bin/egrep -q "(^|:)\$1(\$|:)" | |
then | |
if [ "\$2" = "after" ] | |
then | |
PATH=$PATH:\$1 | |
else | |
PATH=\$1:\$PATH | |
fi | |
fi | |
} | |
export RUN="\${HOME}/run" | |
pathmunge \${RUN}/bin | |
export LD_LIBRARY_PATH=\${RUN}/lib:\${LD_LIBRARY_PATH} | |
export LD_RUN_PATH=\${RUN}/lib:\${LD_RUN_PATH} | |
# perl library search path | |
PERL5LIB=\${RUN}/share/perl/5.8:\${RUN}/share/perl/5.8.4:\${PERL5LIB} | |
export PERL5LIB=\${RUN}/lib/perl/5.8:\${RUN}/lib/perl/5.8.4:\${PERL5LIB} | |
eof | |
## THEN | |
cd ~/soft | |
curl -O ftp://ftp.gnu.org/gnu/readline/readline-6.0.tar.gz | |
tar xzvf readline-6.0.tar.gz | |
cd ~/soft/readline-6.0 | |
./configure --prefix=${HOME}/run | |
make | |
make install | |
cd ~/soft | |
## installing R-2.9.2 went without problem. | |
## when trying $-2.13.2, got "Yikes! One of your processes was just killed because yourprocesses are, as a whole, consuming too much memory." | |
wget http://cran.r-project.org/src/base/R-2/R-2.13.2.tar.gz | |
tar xvzf R-2.13.1.tar.gz | |
cd ~/soft/R-2.13.1 | |
./configure --prefix=${HOME}/run --with-x=no LDFLAGS=-L${HOME}/run/lib | |
make | |
make install | |
##install R packages (inside R) | |
##install.packages(c("bitops", "plyr", "car", "XML"), dep=TRUE) | |
##install RCurl | |
## first install curl | |
cd ~/soft | |
wget http://curl.haxx.se/download/curl-7.21.7.tar.gz | |
tar -vxzf curl-7.21.7.tar.gz | |
cd ~/soft/curl-7.21.7 | |
./configure --prefix=$HOME/run LDFLAGS=-L${HOME}/run/lib | |
make | |
make install | |
## now RCurl | |
cd ~/soft | |
wget http://cran.r-project.org/src/contrib/RCurl_1.6-6.tar.gz | |
## with more recent versions of R, install doesn't work if a configure file is present in the | |
## package as it needs to know whether to target bit64 systems. | |
## It may be possible to use R --arch='x86_64' CMD INSTALL RCurl --configure-args='exec_prefix=${HOME}/run' | |
tar -vxzf RCurl_1.6-6.tar.gz | |
cd RCurl | |
./configure | |
rm configure | |
R CMD INSTALL RCurl --configure-args='exec_prefix=${HOME}/run' | |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment