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document.write('<div id=\"gist-134158\" class=\"gist\">\n  \n  \n    \n            \n\n      <div class=\"gist-file\">\n        <div class=\"gist-data gist-syntax\">\n          \n          \n          \n            <div class=\"gist-highlight\"><pre><div class=\"line\" id=\"LC1\"><span class=\"n\">coerce<\/span> <span class=\"n\">BioSimpleAlign<\/span><span class=\"p\">,<\/span><\/div><div class=\"line\" id=\"LC2\">&nbsp;&nbsp;&nbsp;&nbsp;<span class=\"n\">from<\/span> <span class=\"n\">BioSeqIO<\/span><span class=\"p\">,<\/span>    <span class=\"n\">via<\/span> <span class=\"p\">{<\/span> <span class=\"n\">_seq_to_aln<\/span><span class=\"p\">(<\/span> <span class=\"n\">_seqI_to_seq<\/span><span class=\"p\">(<\/span><span class=\"nv\">$_<\/span><span class=\"p\">)<\/span> <span class=\"p\">)<\/span> <span class=\"p\">},<\/span><\/div><div class=\"line\" id=\"LC3\">&nbsp;&nbsp;&nbsp;&nbsp;<span class=\"n\">from<\/span> <span class=\"n\">BioSeq<\/span><span class=\"p\">,<\/span>      <span class=\"n\">via<\/span> <span class=\"p\">{<\/span> <span class=\"n\">_seq_to_aln<\/span><span class=\"p\">(<\/span><span class=\"nv\">$_<\/span><span class=\"p\">)<\/span>                 <span class=\"p\">},<\/span><\/div><div class=\"line\" id=\"LC4\">&nbsp;&nbsp;&nbsp;&nbsp;<span class=\"n\">from<\/span> <span class=\"n\">BioAlignIO<\/span><span class=\"p\">,<\/span>  <span class=\"n\">via<\/span> <span class=\"p\">{<\/span> <span class=\"nv\">$_<\/span><span class=\"o\">-&gt;<\/span><span class=\"n\">next_aln<\/span>                    <span class=\"p\">},<\/span><\/div><div class=\"line\" id=\"LC5\">&nbsp;&nbsp;&nbsp;&nbsp;<span class=\"n\">from<\/span> <span class=\"n\">ProfileFile<\/span><span class=\"p\">,<\/span> <span class=\"n\">via<\/span> <span class=\"p\">{<\/span> <span class=\"n\">_filename_to_aln<\/span><span class=\"p\">(<\/span><span class=\"nv\">$_<\/span><span class=\"p\">)<\/span>            <span class=\"p\">};<\/span><\/div><\/pre><\/div>\n          \n        <\/div>\n\n        <div class=\"gist-meta\">\n          <a href=\"http://gist.github.com/raw/134158/e2e3dea70ce6bd6a93c0b7fa5f863756d21870c3/gistfile1.pl\" style=\"float:right;\">view raw<\/a>\n          <a href=\"http://gist.github.com/134158#file_gistfile1.pl\" style=\"float:right;margin-right:10px;color:#666\">gistfile1.pl<\/a>\n          <a href=\"http://gist.github.com/134158\">This Gist<\/a> brought to you by <a href=\"http://github.com\">GitHub<\/a>.\n        <\/div>\n      <\/div>\n    \n  \n<\/div>\n')
