ngopal/index.html

## index.html
<html>
<head>
<style>

.node {
  stroke: #fff;
  stroke-width: 1.5px;
}

.link {
  stroke: #999;
  stroke-opacity: .6;
}

</style>
<script src="node_modules/d3/d3.min.js" type="text/javascript"></script>
<script type="text/javascript">

var graph = {nodes:[], edges:[]};
d3.text("http://localhost:8000/cbioportal.sif", function(sif) {
  // get nodes
  d3.tsv.parseRows(sif, function(rows){
    if (graph.nodes.map(function(items) {
         return items.name;
       }).indexOf(rows[0]) === -1) {
      graph.nodes.push({name:rows[0]});
    }
    if (graph.nodes.map(function(items) {
         return items.name;
       }).indexOf(rows[2]) === -1) {
      graph.nodes.push({name:rows[2]});
    }
  });

  // make links
  d3.tsv.parseRows(sif, function(rows) {
    graph.edges.push({source:graph.nodes.map(function(items) { return items.name; }).indexOf(rows[0]), target:graph.nodes.map(function(items) { return items.name; }).indexOf(rows[2])});
  });

  // make network
var width = 960,
    height = 500;

var color = d3.scale.category20();

var force = d3.layout.force()
    .charge(-12)
    .linkDistance(3)
    .size([width, height]);

var svg = d3.select("body").append("svg")
    .attr("width", width)
    .attr("height", height);

  force
      .nodes(graph.nodes)
      .links(graph.edges)
      .start();

  var link = svg.selectAll(".link")
      .data(graph.edges)
    .enter().append("line")
      .attr("class", "link")
      .style("stroke-width", function(d) { return 0.5; });

  var node = svg.selectAll(".node")
      .data(graph.nodes)
    .enter().append("circle")
      .attr("class", "node")
      .attr("r", 2)
      //.style("fill", function(d) { return color(d.group); })
      .call(force.drag);

  node.append("title")
      .text(function(d) { return d.name; });

  force.on("tick", function() {
    link.attr("x1", function(d) { return d.source.x; })
        .attr("y1", function(d) { return d.source.y; })
        .attr("x2", function(d) { return d.target.x; })
        .attr("y2", function(d) { return d.target.y; });

    node.attr("cx", function(d) { return d.x; })
        .attr("cy", function(d) { return d.y; });
  });

});


</script>
</head>
<body>
</body>
	<html>
	<head>
	<style>

	.node {
	stroke: #fff;
	stroke-width: 1.5px;
	}

	.link {
	stroke: #999;
	stroke-opacity: .6;
	}

	</style>
	<script src="node_modules/d3/d3.min.js" type="text/javascript"></script>
	<script type="text/javascript">

	var graph = {nodes:[], edges:[]};
	d3.text("http://localhost:8000/cbioportal.sif", function(sif) {
	// get nodes
	d3.tsv.parseRows(sif, function(rows){
	if (graph.nodes.map(function(items) {
	return items.name;
	}).indexOf(rows[0]) === -1) {
	graph.nodes.push({name:rows[0]});
	}
	if (graph.nodes.map(function(items) {
	return items.name;
	}).indexOf(rows[2]) === -1) {
	graph.nodes.push({name:rows[2]});
	}
	});

	// make links
	d3.tsv.parseRows(sif, function(rows) {
	graph.edges.push({source:graph.nodes.map(function(items) { return items.name; }).indexOf(rows[0]), target:graph.nodes.map(function(items) { return items.name; }).indexOf(rows[2])});
	});

	// make network
	var width = 960,
	height = 500;

	var color = d3.scale.category20();

	var force = d3.layout.force()
	.charge(-12)
	.linkDistance(3)
	.size([width, height]);

	var svg = d3.select("body").append("svg")
	.attr("width", width)
	.attr("height", height);

	force
	.nodes(graph.nodes)
	.links(graph.edges)
	.start();

	var link = svg.selectAll(".link")
	.data(graph.edges)
	.enter().append("line")
	.attr("class", "link")
	.style("stroke-width", function(d) { return 0.5; });

	var node = svg.selectAll(".node")
	.data(graph.nodes)
	.enter().append("circle")
	.attr("class", "node")
	.attr("r", 2)
	//.style("fill", function(d) { return color(d.group); })
	.call(force.drag);

	node.append("title")
	.text(function(d) { return d.name; });

	force.on("tick", function() {
	link.attr("x1", function(d) { return d.source.x; })
	.attr("y1", function(d) { return d.source.y; })
	.attr("x2", function(d) { return d.target.x; })
	.attr("y2", function(d) { return d.target.y; });

	node.attr("cx", function(d) { return d.x; })
	.attr("cy", function(d) { return d.y; });
	});

	});


	</script>
	</head>
	<body>
	</body>