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cjfields/Data::Dumper output of example GOTerm

Created July 22, 2010 21:42
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Data::Dumper output of example GOTerm
$VAR1 = bless( {
'_secondary_ids' => [],
'_dblinks' => {
'_default' => [
bless( {
'database' => 'MetaCyc',
'primary_id' => 'PWY-681',
'_root_verbose' => 0
}, 'Bio::Annotation::DBLink' ),
bless( {
'database' => 'UM-BBD_pathwayID',
'primary_id' => 'dbt',
'_root_verbose' => 0
}, 'Bio::Annotation::DBLink' )
]
},
'_ontology' => bless( {
'engine' => bless( {
'_part_of_relationship' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'PART_OF',
'_synonyms' => [],
'definition' => undef,
'identifier' => undef,
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::RelationshipType' ),
'_positively_regulate' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => undef,
'_references' => [],
'name' => 'POSITIVELY_REGULATES',
'_synonyms' => [],
'definition' => undef,
'identifier' => undef,
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::RelationshipType' ),
'_negatively_regulate' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => undef,
'_references' => [],
'name' => 'NEGATIVELY_REGULATES',
'_synonyms' => [],
'definition' => undef,
'identifier' => undef,
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::RelationshipType' ),
'_is_a_relationship' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'IS_A',
'_synonyms' => [],
'definition' => undef,
'identifier' => undef,
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::RelationshipType' ),
'relationship_factory' => bless( {
'interface' => 'Bio::Ontology::RelationshipI',
'type' => 'Bio::Ontology::Relationship',
'_loaded_types' => {
'Bio::Ontology::Relationship' => 1
},
'_root_verbose' => 0
}, 'Bio::Ontology::RelationshipFactory' ),
'_related_to_relationship' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'RELATED_TO',
'_synonyms' => [],
'definition' => undef,
'identifier' => undef,
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::RelationshipType' ),
'_regulates_relationship' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => undef,
'_references' => [],
'name' => 'REGULATES',
'_synonyms' => [],
'definition' => undef,
'identifier' => undef,
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::RelationshipType' ),
'_graph' => bless( {
'_vertex_attributes' => {
'GO:0016020' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'membrane',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0016020',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0000300' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'peripheral membrane protein of membrane fraction',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0000300',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0005626' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'insoluble fraction',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0005626',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0005938' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'cell cortex',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0005938',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0000133' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'polarisome',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0000133',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0030480' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'contractile ring (sensu Fungi)',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0030480',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0018896' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {
'_default' => [
bless( {
'database' => 'UM-BBD_pathwayID',
'primary_id' => 'dbt2',
'_root_verbose' => 0
}, 'Bio::Annotation::DBLink' )
]
},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'dibenzothiophene catabolism',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0018896',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0003673' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'Gene_Ontology',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0003673',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0019718' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'rough microsome',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0019718',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0000267' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'cell fraction',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0000267',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0005623' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'cell',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0005623',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0000134' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'site of polarized growth (sensu Saccharomyces)',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0000134',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0005630' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'dityrosine layer of spore wall',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0005630',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0005633' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'ascus lipid droplet',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0005633',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0005937' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'shmoo tip',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0005937',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0000667' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'polarisomeY',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0000667',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0030481' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'septin ring (sensu Fungi)',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0030481',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0005792' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {
'_default' => [
bless( {
'database' => 'ISBN',
'primary_id' => '0198506732',
'_root_verbose' => 0
}, 'Bio::Annotation::DBLink' )
]
},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'microsome',
'_synonyms' => [],
'definition' => 'Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g.',
'identifier' => 'GO:0005792',
'comment' => '',
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0005627' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {
'_default' => [
bless( {
'database' => 'ISBN',
'primary_id' => '0198547684',
'_root_verbose' => 0
}, 'Bio::Annotation::DBLink' )
]
},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'ascus',
'_synonyms' => [],
'definition' => 'A sac-like fruiting body (ascomycete fungi); contains ascospores (typically eight in number).',
'identifier' => 'GO:0005627',
'comment' => '',
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0015034' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'cytochrome P450',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0015034',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0005934' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'bud tip',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0005934',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0000666' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'polarisomeX',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0000666',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0005625' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'soluble fraction',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0005625',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0000144' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'septin ring (sensu Saccharomyces)',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0000144',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0005619' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {
'_default' => [
bless( {
'database' => 'ISBN',
'primary_id' => '0879693568',
'_root_verbose' => 0
}, 'Bio::Annotation::DBLink' )
]
},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'spore wall (sensu Fungi)',
'_synonyms' => [],
'definition' => 'The specialized cell wall of the ascospore (spore), as described in Saccharomyces.',
'identifier' => 'GO:0005619',
'comment' => '',
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0009277' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'cell wall (sensu Fungi)',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0009277',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0005811' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {
'_default' => [
bless( {
'database' => 'GO',
'primary_id' => 'mah',
'_root_verbose' => 0
}, 'Bio::Annotation::DBLink' )
]
},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'lipid particle',
'_synonyms' => [],
'definition' => 'Any particle of coalesced lipids in the cytoplasm of a cell.',
'identifier' => 'GO:0005811',
'comment' => '',
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0000299' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'integral membrane protein of membrane fraction',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0000299',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0005933' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'bud',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0005933',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0019717' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'synaptosome',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0019717',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0018895' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'dibenzothiophene metabolism',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0018895',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0004796' => {
'TERM' => bless( {
'_secondary_ids' => [
'GO:0008400'
],
'_dblinks' => {
'_default' => [
bless( {
'database' => 'EC',
'primary_id' => '5.3.99.5',
'_root_verbose' => 0
}, 'Bio::Annotation::DBLink' )
]
},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'thromboxane-A synthase',
'_synonyms' => [
'cytochrome P450 CYP5'
],
'definition' => undef,
'identifier' => 'GO:0004796',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0005632' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'inner layer of spore wall',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0005632',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0000142' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'contractile ring (sensu Saccharomyces)',
'_synonyms' => [
'cytokinetic ring (sensu Saccharomyces)',
'neck ring'
],
'definition' => undef,
'identifier' => 'GO:0000142',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0005624' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {
'_default' => [
bless( {
'database' => 'FB',
'primary_id' => 'ma',
'_root_verbose' => 0
}, 'Bio::Annotation::DBLink' )
]
},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'membrane fraction',
'_synonyms' => [
'murein sacculus',
'peptidoglycan'
],
'definition' => 'That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes.',
'identifier' => 'GO:0005624',
'comment' => '',
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0042178' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'xenobiotic catabolism',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0042178',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0030424' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'axon',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0030424',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0005575' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {
'_default' => [
bless( {
'database' => 'GO',
'primary_id' => 'curators',
'_root_verbose' => 0
}, 'Bio::Annotation::DBLink' )
]
},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'cellular_component',
'_synonyms' => [],
'definition' => 'The part of a cell of which a gene product is a component; for purpose of GO includes the extracellular environment of cells; a gene product may be a component of one or more parts of a cell; this term includes gene products that are parts of macromolecular complexes, by the definition that all members of a complex normally co-purify under all except extreme conditions.',
'identifier' => 'GO:0005575',
'comment' => '',
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0019719' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'smooth microsome',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0019719',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0005935' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'bud neck',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0005935',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0018897' => {
'TERM' => $VAR1
},
'GO:0005631' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'chitosan layer of spore wall',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0005631',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
},
'GO:0005628' => {
'TERM' => bless( {
'_secondary_ids' => [],
'_dblinks' => {},
'_ontology' => $VAR1->{'_ontology'},
'_references' => [],
'name' => 'prospore membrane',
'_synonyms' => [],
'definition' => undef,
'identifier' => 'GO:0005628',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' )
}
},
'_edge_attributes' => {
'GO:0000267GO:0005625' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0015034GO:0004796' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0030481GO:0000666' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0005627GO:0005619' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0000267GO:0005626' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0030481GO:0000667' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0005619GO:0005630' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0016020GO:0005628' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0005624GO:0000299' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0030481GO:0000144' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0005935GO:0000666' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0005811GO:0000666' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0000134GO:0005934' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0009277GO:0005619' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0003673GO:0005575' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0005938GO:0000667' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0005935GO:0000667' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0042178GO:0018896' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0005624GO:0000300' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0005938GO:0000666' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0000134GO:0005935' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0018895GO:0018896' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0005625GO:0000666' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0005624GO:0005792' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0005933GO:0005934' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0005937GO:0000133' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0005937GO:0000667' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0005934GO:0000133' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0018895GO:0004796' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0005811GO:0005633' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0005938GO:0000133' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0005627GO:0005633' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0005627GO:0005628' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0005935GO:0000142' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0018895GO:0018897' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0003673GO:0018895' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0005619GO:0005632' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0030480GO:0000142' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0005792GO:0019718' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0005792GO:0019719' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0005623GO:0005627' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0000267GO:0005624' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0005619GO:0005631' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0005575GO:0005623' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
},
'GO:0005937GO:0000666' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0005811GO:0000667' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0005935GO:0000133' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0005623GO:0030424' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0000142GO:0000144' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0005623GO:0005933' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0005933GO:0005935' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0005623GO:0000267' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0005625GO:0000667' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_part_of_relationship'}
},
'GO:0005624GO:0019717' => {
'ONTOLOGY' => $VAR1->{'_ontology'},
'TYPE' => $VAR1->{'_ontology'}{'engine'}{'_is_a_relationship'}
}
},
'_graph' => bless( [
0,
97,
bless( [
43,
152,
1,
{
'33' => 'GO:0019717',
'32' => 'GO:0000300',
'21' => 'GO:0000144',
'7' => 'GO:0005623',
'26' => 'GO:0005937',
'17' => 'GO:0005935',
'2' => 'GO:0005811',
'1' => 'GO:0005627',
'18' => 'GO:0000134',
'30' => 'GO:0019718',
'16' => 'GO:0005933',
'27' => 'GO:0000267',
'25' => 'GO:0005938',
'28' => 'GO:0005626',
'40' => 'GO:0018897',
'20' => 'GO:0030480',
'14' => 'GO:0005632',
'24' => 'GO:0005934',
'10' => 'GO:0016020',
'31' => 'GO:0019719',
'35' => 'GO:0000666',
'11' => 'GO:0009277',
'42' => 'GO:0015034',
'22' => 'GO:0030481',
'0' => 'GO:0005575',
'13' => 'GO:0005630',
'23' => 'GO:0000133',
'29' => 'GO:0000299',
'6' => 'GO:0003673',
'39' => 'GO:0042178',
'36' => 'GO:0000667',
'3' => 'GO:0005619',
'9' => 'GO:0005628',
'41' => 'GO:0004796',
'12' => 'GO:0005631',
'15' => 'GO:0030424',
'38' => 'GO:0018896',
'8' => 'GO:0005633',
'4' => 'GO:0005624',
'34' => 'GO:0005625',
'37' => 'GO:0018895',
'19' => 'GO:0000142',
'5' => 'GO:0005792'
},
{
'GO:0016020' => 10,
'GO:0000300' => 32,
'GO:0005626' => 28,
'GO:0005938' => 25,
'GO:0000133' => 23,
'GO:0030480' => 20,
'GO:0018896' => 38,
'GO:0003673' => 6,
'GO:0019718' => 30,
'GO:0000267' => 27,
'GO:0005623' => 7,
'GO:0000134' => 18,
'GO:0005630' => 13,
'GO:0005633' => 8,
'GO:0005937' => 26,
'GO:0000667' => 36,
'GO:0030481' => 22,
'GO:0005792' => 5,
'GO:0005627' => 1,
'GO:0015034' => 42,
'GO:0005934' => 24,
'GO:0000666' => 35,
'GO:0005625' => 34,
'GO:0000144' => 21,
'GO:0005619' => 3,
'GO:0009277' => 11,
'GO:0005811' => 2,
'GO:0000299' => 29,
'GO:0005933' => 16,
'GO:0019717' => 33,
'GO:0018895' => 37,
'GO:0004796' => 41,
'GO:0005632' => 14,
'GO:0000142' => 19,
'GO:0005624' => 4,
'GO:0042178' => 39,
'GO:0030424' => 15,
'GO:0005575' => 0,
'GO:0019719' => 31,
'GO:0005935' => 17,
'GO:0018897' => 40,
'GO:0005631' => 12,
'GO:0005628' => 9
},
{},
$VAR1->{'_ontology'}{'engine'}{'_graph'}{'_graph'}
], 'Graph::AdjacencyMap::Light' ),
bless( [
54,
128,
2,
{
'33' => [
4,
32
],
'32' => [
5,
31
],
'21' => [
25,
23
],
'7' => [
11,
3
],
'26' => [
7,
27
],
'17' => [
17,
19
],
'2' => [
7,
1
],
'1' => [
0,
7
],
'18' => [
22,
21
],
'30' => [
4,
5
],
'16' => [
20,
19
],
'44' => [
26,
36
],
'27' => [
27,
28
],
'25' => [
16,
24
],
'28' => [
27,
4
],
'40' => [
26,
35
],
'20' => [
24,
23
],
'14' => [
18,
17
],
'49' => [
39,
38
],
'24' => [
18,
24
],
'10' => [
3,
13
],
'31' => [
5,
30
],
'35' => [
27,
34
],
'11' => [
3,
14
],
'53' => [
37,
41
],
'48' => [
6,
37
],
'42' => [
17,
36
],
'22' => [
26,
23
],
'46' => [
22,
36
],
'0' => [
6,
0
],
'13' => [
7,
16
],
'23' => [
17,
23
],
'29' => [
4,
29
],
'6' => [
1,
9
],
'50' => [
37,
38
],
'39' => [
25,
35
],
'36' => [
2,
35
],
'3' => [
2,
8
],
'51' => [
37,
40
],
'9' => [
3,
12
],
'41' => [
34,
35
],
'12' => [
7,
15
],
'47' => [
34,
36
],
'15' => [
16,
17
],
'52' => [
42,
41
],
'38' => [
17,
35
],
'8' => [
1,
3
],
'4' => [
1,
8
],
'34' => [
4,
33
],
'45' => [
2,
36
],
'37' => [
22,
35
],
'43' => [
25,
36
],
'19' => [
19,
21
],
'5' => [
10,
9
]
},
{
'11' => {
'3' => 7
},
'7' => {
'27' => 26,
'1' => 2,
'16' => 13,
'15' => 12
},
'26' => {
'35' => 40,
'36' => 44,
'23' => 22
},
'17' => {
'35' => 38,
'36' => 42,
'23' => 23,
'19' => 17
},
'2' => {
'35' => 36,
'8' => 3,
'36' => 45
},
'42' => {
'41' => 52
},
'22' => {
'35' => 37,
'21' => 18,
'36' => 46
},
'1' => {
'8' => 4,
'3' => 8,
'9' => 6
},
'18' => {
'24' => 24,
'17' => 14
},
'0' => {
'7' => 1
},
'16' => {
'24' => 25,
'17' => 15
},
'27' => {
'4' => 28,
'34' => 35,
'28' => 27
},
'6' => {
'0' => 0,
'37' => 48
},
'25' => {
'35' => 39,
'36' => 43,
'23' => 21
},
'39' => {
'38' => 49
},
'3' => {
'13' => 10,
'12' => 9,
'14' => 11
},
'20' => {
'19' => 16
},
'4' => {
'33' => 34,
'32' => 33,
'29' => 29,
'5' => 30
},
'34' => {
'35' => 41,
'36' => 47
},
'37' => {
'38' => 50,
'40' => 51,
'41' => 53
},
'24' => {
'23' => 20
},
'10' => {
'9' => 5
},
'19' => {
'21' => 19
},
'5' => {
'30' => 31,
'31' => 32
}
},
{
'33' => {
'4' => 34
},
'32' => {
'4' => 33
},
'21' => {
'22' => 18,
'19' => 19
},
'7' => {
'0' => 1
},
'17' => {
'18' => 14,
'16' => 15
},
'1' => {
'7' => 2
},
'30' => {
'5' => 31
},
'16' => {
'7' => 13
},
'27' => {
'7' => 26
},
'28' => {
'27' => 27
},
'40' => {
'37' => 51
},
'14' => {
'3' => 11
},
'24' => {
'18' => 24,
'16' => 25
},
'31' => {
'5' => 32
},
'35' => {
'25' => 39,
'22' => 37,
'34' => 41,
'26' => 40,
'17' => 38,
'2' => 36
},
'0' => {
'6' => 0
},
'13' => {
'3' => 10
},
'23' => {
'25' => 21,
'24' => 20,
'26' => 22,
'17' => 23
},
'29' => {
'4' => 29
},
'3' => {
'1' => 8,
'11' => 7
},
'36' => {
'22' => 46,
'25' => 43,
'34' => 47,
'26' => 44,
'2' => 45,
'17' => 42
},
'9' => {
'1' => 6,
'10' => 5
},
'12' => {
'3' => 9
},
'41' => {
'42' => 52,
'37' => 53
},
'15' => {
'7' => 12
},
'8' => {
'1' => 4,
'2' => 3
},
'38' => {
'39' => 49,
'37' => 50
},
'4' => {
'27' => 28
},
'34' => {
'27' => 35
},
'37' => {
'6' => 48
},
'19' => {
'17' => 17,
'20' => 16
},
'5' => {
'4' => 30
}
},
$VAR1->{'_ontology'}{'engine'}{'_graph'}{'_graph'}
], 'Graph::AdjacencyMap::Light' )
], 'Graph::Directed' )
}, 'Bio::Ontology::SimpleGOEngine::GraphAdaptor' )
}, 'Bio::Ontology::OBOEngine' ),
'name' => 'Gene Ontology',
'_root_verbose' => 0
}, 'Bio::Ontology::Ontology' ),
'_references' => [],
'name' => 'dibenzothiophene desulfurization',
'_synonyms' => [
'murein sacculus',
'peptidoglycan'
],
'definition' => undef,
'identifier' => 'GO:0018897',
'comment' => undef,
'_root_verbose' => 0,
'is_obsolete' => 0
}, 'Bio::Ontology::GOterm' );
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