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document.write('<div id=\"gist-5065\" class=\"gist\">\n  \n  \n    \n            \n\n      <div class=\"gist-file\">\n        <div class=\"gist-data gist-syntax\">\n          \n          \n          \n            <div class=\"gist-highlight\"><pre><div class=\"line\" id=\"LC1\">&nbsp;&nbsp;<span class=\"n\">desc<\/span> <span class=\"s1\">&#39;Loads all the alignment codon data&#39;<\/span><\/div><div class=\"line\" id=\"LC2\">&nbsp;&nbsp;<span class=\"n\">task<\/span> <span class=\"ss\">:load_alignment_codons<\/span> <span class=\"o\">=&gt;<\/span> <span class=\"ss\">:clear_alignment_codons<\/span> <span class=\"k\">do<\/span><\/div><div class=\"line\" id=\"LC3\">&nbsp;&nbsp;&nbsp;&nbsp;<span class=\"n\">starfish<\/span> <span class=\"o\">=<\/span> <span class=\"sx\">%x|which starfish|<\/span><span class=\"o\">.<\/span><span class=\"n\">strip<\/span><\/div><div class=\"line\" id=\"LC4\">&nbsp;&nbsp;&nbsp;&nbsp;<span class=\"n\">loader<\/span> <span class=\"o\">=<\/span> <span class=\"no\">PROJECT_ROOT<\/span> <span class=\"o\">+<\/span> <span class=\"s1\">&#39;/model/starfish/load_alignment_codons.rb&#39;<\/span><\/div><div class=\"line\" id=\"LC5\">&nbsp;&nbsp;&nbsp;&nbsp;<span class=\"nb\">p<\/span> <span class=\"o\">=<\/span> <span class=\"nb\">lambda<\/span><span class=\"p\">{<\/span> <span class=\"nb\">system<\/span><span class=\"p\">(<\/span> <span class=\"s2\">&quot;qsub -cwd -j y -V <\/span><span class=\"si\">#{<\/span><span class=\"n\">starfish<\/span><span class=\"si\">}<\/span><span class=\"s2\"> <\/span><span class=\"si\">#{<\/span><span class=\"n\">loader<\/span><span class=\"si\">}<\/span><span class=\"s2\">&quot;<\/span><span class=\"p\">)<\/span> <span class=\"p\">}<\/span><\/div><div class=\"line\" id=\"LC6\">&nbsp;<\/div><div class=\"line\" id=\"LC7\">&nbsp;&nbsp;&nbsp;&nbsp;<span class=\"nb\">p<\/span><span class=\"o\">.<\/span><span class=\"n\">call<\/span><\/div><div class=\"line\" id=\"LC8\">&nbsp;&nbsp;&nbsp;&nbsp;<span class=\"nb\">sleep<\/span><span class=\"p\">(<\/span><span class=\"mi\">120<\/span><span class=\"p\">)<\/span><\/div><div class=\"line\" id=\"LC9\">&nbsp;&nbsp;&nbsp;&nbsp;<span class=\"mi\">16<\/span><span class=\"o\">.<\/span><span class=\"n\">times<\/span> <span class=\"p\">{<\/span> <span class=\"nb\">p<\/span><span class=\"o\">.<\/span><span class=\"n\">call<\/span> <span class=\"p\">}<\/span><\/div><div class=\"line\" id=\"LC10\">&nbsp;&nbsp;<span class=\"k\">end<\/span><\/div><\/pre><\/div>\n          \n        <\/div>\n\n        <div class=\"gist-meta\">\n          <a href=\"http://gist.github.com/raw/5065/c8efdc18057d0b7c6d874241f83c27c56a3927fd/starfish-rake-sge.rb\" style=\"float:right;\">view raw<\/a>\n          <a href=\"http://gist.github.com/5065#file_starfish_rake_sge.rb\" style=\"float:right;margin-right:10px;color:#666\">starfish-rake-sge.rb<\/a>\n          <a href=\"http://gist.github.com/5065\">This Gist<\/a> brought to you by <a href=\"http://github.com\">GitHub<\/a>.\n        <\/div>\n      <\/div>\n    \n  \n<\/div>\n')
