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Created August 11, 2010 17:45
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prove -v t/Ontology/Ontology.t on topic/leto_interpro_bug
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: term IPR013806 already defined
STACK: Bio::Ontology::SimpleOntologyEngine::add_term
STACK: Bio::Ontology::Ontology::add_term Bio/Ontology/Ontology.pm:367
STACK: Bio::OntologyIO::Handlers::InterProHandler::start_element Bio/OntologyIO/Handlers/InterProHandler.pm:515
STACK: XML::Parser::PerlSAX::_handle_start /home/leto/local-lib/lib/perl5/XML/Parser/PerlSAX.pm:229
STACK: try{} block /home/leto/local-lib/lib/perl5/XML/Parser/PerlSAX.pm:77
STACK: XML::Parser::Expat::parse /usr/lib/perl5/XML/Parser/Expat.pm:469
STACK: XML::Parser::parse /usr/lib/perl5/XML/Parser.pm:187
STACK: XML::Parser::parsefile /usr/lib/perl5/XML/Parser.pm:233
STACK: XML::Parser::PerlSAX::parse /home/leto/local-lib/lib/perl5/XML/Parser/PerlSAX.pm:146
STACK: Bio::OntologyIO::InterProParser::parse Bio/OntologyIO/InterProParser.pm:176
STACK: Bio::OntologyIO::InterProParser::next_ontology Bio/OntologyIO/InterProParser.pm:213
STACK: t/Ontology/Ontology.t:169
-----------------------------------------------------------
# Looks like you planned 54 tests but ran 53.
# Looks like your test exited with 255 just after 53.
t/Ontology/Ontology.t ..
1..54
ok 1 - use Bio::OntologyIO;
ok 2 - use Bio::Ontology::RelationshipType;
ok 3 - The object isa Bio::Ontology::Ontology
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26
ok 27
ok 28
ok 29
ok 30
ok 31
ok 32
ok 33
ok 34
ok 35
ok 36
ok 37
ok 38
ok 39
ok 40
ok 41
ok 42
ok 43
ok 44
ok 45
ok 46
ok 47
ok 48
ok 49
ok 50
ok 51
ok 52
ok 53 - Interpro XML can be parsed
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 1/54 subtests
Test Summary Report
-------------------
t/Ontology/Ontology.t (Wstat: 65280 Tests: 53 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 54 tests but ran 53.
Files=1, Tests=53, 0 wallclock secs ( 0.03 usr 0.00 sys + 0.43 cusr 0.02 csys = 0.48 CPU)
Result: FAIL
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