Created
August 11, 2010 17:45
-
-
Save leto/519384 to your computer and use it in GitHub Desktop.
prove -v t/Ontology/Ontology.t on topic/leto_interpro_bug
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
------------- EXCEPTION: Bio::Root::Exception ------------- | |
MSG: term IPR013806 already defined | |
STACK: Bio::Ontology::SimpleOntologyEngine::add_term | |
STACK: Bio::Ontology::Ontology::add_term Bio/Ontology/Ontology.pm:367 | |
STACK: Bio::OntologyIO::Handlers::InterProHandler::start_element Bio/OntologyIO/Handlers/InterProHandler.pm:515 | |
STACK: XML::Parser::PerlSAX::_handle_start /home/leto/local-lib/lib/perl5/XML/Parser/PerlSAX.pm:229 | |
STACK: try{} block /home/leto/local-lib/lib/perl5/XML/Parser/PerlSAX.pm:77 | |
STACK: XML::Parser::Expat::parse /usr/lib/perl5/XML/Parser/Expat.pm:469 | |
STACK: XML::Parser::parse /usr/lib/perl5/XML/Parser.pm:187 | |
STACK: XML::Parser::parsefile /usr/lib/perl5/XML/Parser.pm:233 | |
STACK: XML::Parser::PerlSAX::parse /home/leto/local-lib/lib/perl5/XML/Parser/PerlSAX.pm:146 | |
STACK: Bio::OntologyIO::InterProParser::parse Bio/OntologyIO/InterProParser.pm:176 | |
STACK: Bio::OntologyIO::InterProParser::next_ontology Bio/OntologyIO/InterProParser.pm:213 | |
STACK: t/Ontology/Ontology.t:169 | |
----------------------------------------------------------- | |
# Looks like you planned 54 tests but ran 53. | |
# Looks like your test exited with 255 just after 53. | |
t/Ontology/Ontology.t .. | |
1..54 | |
ok 1 - use Bio::OntologyIO; | |
ok 2 - use Bio::Ontology::RelationshipType; | |
ok 3 - The object isa Bio::Ontology::Ontology | |
ok 4 | |
ok 5 | |
ok 6 | |
ok 7 | |
ok 8 | |
ok 9 | |
ok 10 | |
ok 11 | |
ok 12 | |
ok 13 | |
ok 14 | |
ok 15 | |
ok 16 | |
ok 17 | |
ok 18 | |
ok 19 | |
ok 20 | |
ok 21 | |
ok 22 | |
ok 23 | |
ok 24 | |
ok 25 | |
ok 26 | |
ok 27 | |
ok 28 | |
ok 29 | |
ok 30 | |
ok 31 | |
ok 32 | |
ok 33 | |
ok 34 | |
ok 35 | |
ok 36 | |
ok 37 | |
ok 38 | |
ok 39 | |
ok 40 | |
ok 41 | |
ok 42 | |
ok 43 | |
ok 44 | |
ok 45 | |
ok 46 | |
ok 47 | |
ok 48 | |
ok 49 | |
ok 50 | |
ok 51 | |
ok 52 | |
ok 53 - Interpro XML can be parsed | |
Dubious, test returned 255 (wstat 65280, 0xff00) | |
Failed 1/54 subtests | |
Test Summary Report | |
------------------- | |
t/Ontology/Ontology.t (Wstat: 65280 Tests: 53 Failed: 0) | |
Non-zero exit status: 255 | |
Parse errors: Bad plan. You planned 54 tests but ran 53. | |
Files=1, Tests=53, 0 wallclock secs ( 0.03 usr 0.00 sys + 0.43 cusr 0.02 csys = 0.48 CPU) | |
Result: FAIL |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment