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mhubig/scipy_install_error.txt

Created August 16, 2010 20:44
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scipy_install_error.txt
Last login: Mon Aug 16 22:18:24 on ttys000
iMac:~ markus$ pip install Downloads/scipy-0.8.0.tar.gz
Unpacking ./Downloads/scipy-0.8.0.tar.gz
Running setup.py egg_info for package from file:///Users/markus/Downloads/scipy-0.8.0.tar.gz
Warning: No configuration returned, assuming unavailable.blas_opt_info:
FOUND:
extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
define_macros = [('NO_ATLAS_INFO', 3)]
extra_compile_args = ['-faltivec', '-I/System/Library/Frameworks/vecLib.framework/Headers']
lapack_opt_info:
FOUND:
extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
define_macros = [('NO_ATLAS_INFO', 3)]
extra_compile_args = ['-faltivec']
umfpack_info:
libraries umfpack not found in /Library/Frameworks/Python.framework/Versions/2.7/lib
libraries umfpack not found in /usr/local/lib
libraries umfpack not found in /usr/lib
libraries umfpack not found in /opt/local/lib
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/system_info.py:459: UserWarning:
UMFPACK sparse solver (http://www.cise.ufl.edu/research/sparse/umfpack/)
not found. Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [umfpack]) or by setting
the UMFPACK environment variable.
warnings.warn(self.notfounderror.__doc__)
NOT AVAILABLE
Traceback (most recent call last):
File "<string>", line 14, in <module>
File "/var/folders/EG/EGnJWd+UFl0RvxFixXPF7++++TI/-Tmp-/pip-_XLwjH-build/setup.py", line 160, in <module>
setup_package()
File "/var/folders/EG/EGnJWd+UFl0RvxFixXPF7++++TI/-Tmp-/pip-_XLwjH-build/setup.py", line 152, in setup_package
configuration=configuration )
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/core.py", line 152, in setup
config = configuration()
File "/var/folders/EG/EGnJWd+UFl0RvxFixXPF7++++TI/-Tmp-/pip-_XLwjH-build/setup.py", line 118, in configuration
config.add_subpackage('scipy')
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 972, in add_subpackage
caller_level = 2)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 941, in get_subpackage
caller_level = caller_level + 1)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 878, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/setup.py", line 20, in configuration
config.add_subpackage('special')
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 972, in add_subpackage
caller_level = 2)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 941, in get_subpackage
caller_level = caller_level + 1)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 878, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "/private/var/folders/EG/EGnJWd+UFl0RvxFixXPF7++++TI/-Tmp-/pip-_XLwjH-build/scipy/special/setup.py", line 54, in configuration
extra_info=get_info("npymath")
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 2092, in get_info
pkg_info = get_pkg_info(pkgname, dirs)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 2044, in get_pkg_info
return read_config(pkgname, dirs)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/npy_pkg_config.py", line 384, in read_config
v = _read_config_imp(pkg_to_filename(pkgname), dirs)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/npy_pkg_config.py", line 320, in _read_config_imp
meta, vars, sections, reqs = _read_config(filenames)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/npy_pkg_config.py", line 304, in _read_config
meta, vars, sections, reqs = parse_config(f, dirs)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/npy_pkg_config.py", line 276, in parse_config
raise PkgNotFound("Could not find file(s) %s" % str(filenames))
numpy.distutils.npy_pkg_config.PkgNotFound: Could not find file(s) ['/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/lib/npy-pkg-config/npymath.ini']
Complete output from command python setup.py egg_info:
Warning: No configuration returned, assuming unavailable.blas_opt_info:
FOUND:
extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
define_macros = [('NO_ATLAS_INFO', 3)]
extra_compile_args = ['-faltivec', '-I/System/Library/Frameworks/vecLib.framework/Headers']
lapack_opt_info:
FOUND:
extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
define_macros = [('NO_ATLAS_INFO', 3)]
extra_compile_args = ['-faltivec']
umfpack_info:
libraries umfpack not found in /Library/Frameworks/Python.framework/Versions/2.7/lib
libraries umfpack not found in /usr/local/lib
libraries umfpack not found in /usr/lib
libraries umfpack not found in /opt/local/lib
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/system_info.py:459: UserWarning:
UMFPACK sparse solver (http://www.cise.ufl.edu/research/sparse/umfpack/)
not found. Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [umfpack]) or by setting
the UMFPACK environment variable.
warnings.warn(self.notfounderror.__doc__)
NOT AVAILABLE
Traceback (most recent call last):
File "<string>", line 14, in <module>
File "/var/folders/EG/EGnJWd+UFl0RvxFixXPF7++++TI/-Tmp-/pip-_XLwjH-build/setup.py", line 160, in <module>
setup_package()
File "/var/folders/EG/EGnJWd+UFl0RvxFixXPF7++++TI/-Tmp-/pip-_XLwjH-build/setup.py", line 152, in setup_package
configuration=configuration )
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/core.py", line 152, in setup
config = configuration()
File "/var/folders/EG/EGnJWd+UFl0RvxFixXPF7++++TI/-Tmp-/pip-_XLwjH-build/setup.py", line 118, in configuration
config.add_subpackage('scipy')
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 972, in add_subpackage
caller_level = 2)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 941, in get_subpackage
caller_level = caller_level + 1)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 878, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/setup.py", line 20, in configuration
config.add_subpackage('special')
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 972, in add_subpackage
caller_level = 2)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 941, in get_subpackage
caller_level = caller_level + 1)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 878, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "/private/var/folders/EG/EGnJWd+UFl0RvxFixXPF7++++TI/-Tmp-/pip-_XLwjH-build/scipy/special/setup.py", line 54, in configuration
extra_info=get_info("npymath")
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 2092, in get_info
pkg_info = get_pkg_info(pkgname, dirs)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 2044, in get_pkg_info
return read_config(pkgname, dirs)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/npy_pkg_config.py", line 384, in read_config
v = _read_config_imp(pkg_to_filename(pkgname), dirs)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/npy_pkg_config.py", line 320, in _read_config_imp
meta, vars, sections, reqs = _read_config(filenames)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/npy_pkg_config.py", line 304, in _read_config
meta, vars, sections, reqs = parse_config(f, dirs)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/distutils/npy_pkg_config.py", line 276, in parse_config
raise PkgNotFound("Could not find file(s) %s" % str(filenames))
numpy.distutils.npy_pkg_config.PkgNotFound: Could not find file(s) ['/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/lib/npy-pkg-config/npymath.ini']
----------------------------------------
Command python setup.py egg_info failed with error code 1
Storing complete log in /Users/markus/.pip/pip.log
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