gistfile1.txt

<colors>
<<include etc/colors.conf>>
</colors>

<fonts>
<<include etc/fonts.conf>>
</fonts>

<<include ideogram.conf>>
<<include ticks.conf>>

karyotype = karotype.txt

<image>
dir = .
file  = hs_marmoset_circos.png
24bit = yes
png = yes
# radius of inscribed circle in image
radius         = 1500p
background     = white
# by default angle=0 is at 3 o'clock position
angle_offset   = -24
#angle_orientation = counterclockwise

auto_alpha_colors = yes
auto_alpha_steps  = 5
</image>

chromosomes_units           = 1000000

chromosomes         =  hs_chr_19:58.86-58.99; ms_chr_22:44.87-45.05
chromosomes_reverse = hs_chr_19
chromosomes_display_default = no

<zooms>
 <zoom>
 chr = hs_chr_19
 start = 58.861u
 end   = 58.983u
 scale = 1200
 </zoom>

 <zoom>
 chr = ms_chr_22
 start = 44.878u
 end   = 45.044u
 scale = 1200
 </zoom>
</zoom>

<links>
  z      = 0
  radius = 0.99r
  bezier_radius = 0.1r

  <link segdup>
  show         = yes
  color        = vvdgrey
  thickness    = 4
  file         = links.txt
  record_limit = 2500
  </link>
</links>

<plots>

<plot>
  type  = text
  color = red
  file  = text.bands.txt

  r0 = 1r
  r1 = 1r+1500p

  show_links     = yes
  link_dims      = 0p,2p,6p,2p,5p
  link_thickness = 2p
  link_color     = black

  label_snuggle        = yes
  max_snuggle_distance = 1r
  snuggle_tolerance    = 0.25r
  snuggle_sampling     = 2
  snuggle_refine       = yes

  label_size = 35p
  label_font = condensed
  padding    = 0p
  rpadding   = 0p
</plot>
</plots>

anglestep       = 0.5
minslicestep    = 10
beziersamples   = 40
debug           = no
warnings        = no
imagemap        = no

units_ok = bupr
units_nounit = n

debug_group = ticks