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Phylo Trees
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require(rCharts) | |
require(rChartsExtra) | |
p1 <- rCharts$new() | |
p1$field('lib', 'jsphylo') | |
p1$field('LIB', get_lib(system.file('libraries', 'jsphylo', package = 'rChartsExtra'))) | |
p1$set(dataObject = list(newick = write.tree(tree2))) |
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<!doctype HTML> | |
<meta charset = 'utf-8'> | |
<html> | |
<head> | |
<script src='http://www.jsphylosvg.com/js/raphael/raphael-min.js' type='text/javascript'></script> | |
<script src='http://www.jsphylosvg.com/js/jsphylosvg-min.js' type='text/javascript'></script> | |
<style> | |
.rChart { | |
display: block; | |
margin-left: auto; | |
margin-right: auto; | |
width: 500px; | |
height: 500px; | |
} | |
</style> | |
</head> | |
<body> | |
<div id='chart109d434aaf504' class='rChart jsphylo'></div> | |
<script type="text/javascript"> | |
var chartParams = { | |
"dom": "chart109d434aaf504", | |
"width": 500, | |
"height": 500, | |
"dataObject": { | |
"newick": "(((Gastonia_rodriguesiana,Gastonia_mauritiana),Gastonia_spectabilis),((Reynoldsia_pleiosperma,Reynoldsia_lanutoensis,(Reynoldsia_verrucosa,Reynoldsia_marchionensis)),((Munroidendron_racemosum,Reynoldsia_sandwicensis),(Tetraplasandra_hawaiensis,((Tetraplasandra_flynnii,(Tetraplasandra_gymnocarpa,Tetraplasandra_kavaiensis)),(Tetraplasandra_oahuensis,(Tetraplasandra_waialealae,Tetraplasandra_waimeae)))))));" | |
}, | |
"id": "chart109d434aaf504" | |
} | |
window.onload = function(){ | |
var dataObject = chartParams.dataObject; | |
phylocanvas = new Smits.PhyloCanvas( | |
dataObject, | |
'chart109d434aaf504', | |
chartParams.width, | |
chartParams.height | |
); | |
}; | |
</script> | |
</body> | |
</html> |
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