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@kforeman
Created January 26, 2017 20:43
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Numpy performance example
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{
"cells": [
{
"cell_type": "code",
"execution_count": 1,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"import numpy as np"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Generate individual arrays then concatenate once"
]
},
{
"cell_type": "code",
"execution_count": 2,
"metadata": {
"collapsed": false
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"100 loops, best of 3: 3.52 ms per loop\n"
]
}
],
"source": [
"%%timeit\n",
"l = []\n",
"for i in range(100):\n",
" l.append(np.random.normal(size=1000))\n",
"a = np.concatenate(l)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Build empty array then fill it in"
]
},
{
"cell_type": "code",
"execution_count": 3,
"metadata": {
"collapsed": false
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"100 loops, best of 3: 3.65 ms per loop\n"
]
}
],
"source": [
"%%timeit\n",
"b = np.empty(100000)\n",
"for i in range(100):\n",
" b[i*1000:(i+1)*1000] = np.random.normal(size=1000)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Concatenate arrays repeatedly"
]
},
{
"cell_type": "code",
"execution_count": 4,
"metadata": {
"collapsed": false
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"10 loops, best of 3: 30.3 ms per loop\n"
]
}
],
"source": [
"%%timeit\n",
"c = np.random.normal(size=1000)\n",
"for i in range(1,100):\n",
" c = np.concatenate([c, np.random.normal(size=1000)])"
]
}
],
"metadata": {
"kernelspec": {
"display_name": "Python [conda root]",
"language": "python",
"name": "conda-root-py"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.5.2"
}
},
"nbformat": 4,
"nbformat_minor": 1
}
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