this is an example of using the canvas widget to depict molecules in 2D - to make life a bit easier, I'm starting with the JME string, so I use their coordinates etc for rendering...wouldn't it would be nice to be able to use a molfile or a smiles string though ;)

You'll need a copy of the JME Editor, firefox is the only browser I've tested it in and firebug was used during development.


JME Editor courtesy of Peter Ertl, Novartis

paste a jme string into the textbox (or draw onto the applet) and click depict - you should see a depiction in the canvas element
there is a sample string below if you don't have a JME applet to hand - you may need to hack the depict function to get it to work