networks

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cor_1.json

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level","gravity":0.1,"charge":-300,"nodes":[{"category":"Function","size":133376,"label":"K06147"},{"category":"Function","size":201108,"label":"K02004"},{"category":"Function","size":126618,"label":"K01990"},{"category":"Function","size":123504,"label":"K02003"},{"category":"Function","size":99752,"label":"K03088"},{"category":"Function","size":75452,"label":"K05349"},{"category":"Function","size":71188,"label":"K01992"},{"category":"Function","size":52256,"label":"K02406"},{"category":"Function","size":190900,"label":"K03406"},{"category":"Function","size":73790,"label":"K01190"},{"category":"Function","size":72238,"label":"K03205"},{"category":"Function","size":41014,"label":"K01153"},{"category":"Function","size":61658,"label":"K03496"},{"category":"Function","size":56864,"label":"K02315"},{"category":"Function","size":39242,"label":"K02529"},{"category":"Function","size":45424,"label":"K03657"},{"category":"Function","size":41372,"label":"K03427"},{"category":"Function","size":30360,"label":"K06871"},{"category":"Function","size":44706,"label":"K03497"},{"category":"Function","size":46306,"label":"K03655"},{"category":"Function","size":41376,"label":"K01955"},{"category":"Function","size":20890,"label":"K17318"},{"category":"Function","size":30262,"label":"K01953"},{"category":"Function","size":34204,"label":"K07258"},{"category":"Function","size":52882,"label":"K00558"},{"category":"Function","size":99928,"label":"K03169"},{"category":"Function","size":17842,"label":"K07718"},{"category":"Function","size":22332,"label":"K07720"},{"category":"Function","size":22504,"label":"K02026"},{"category":"Function","size":30272,"label":"K02337"},{"category":"Function","size":34862,"label":"K02469"},{"category":"Function","size":36158,"label":"K04759"},{"category":"Function","size":26492,"label":"K00527"},{"category":"Function","size":39286,"label":"K03043"},{"category":"Function","size":39770,"label":"K03046"},{"category":"Function","size":32756,"label":"K02470"},{"category":"Function","size":33016,"label":"K02355"},{"category":"Function","size":31872,"label":"K00688"},{"category":"Function","size":38502,"label":"K00615"},{"category":"Function","size":30486,"label":"K03798"},{"category":"Function","size":28288,"label":"K07491"},{"category":"Function","size":20152,"label":"K19294"},{"category":"Function","size":19842,"label":"K01154"},{"category":"Function","size":40330,"label":"K07133"},{"category":"Function","size":130822,"label":"K21572"},{"category":"Function","size":28076,"label":"K03091"},{"category":"Function","size":14960,"label":"K17319"},{"category":"Function","size":36550,"label":"K06889"},{"category":"Function","size":20718,"label":"K01652"},{"category":"Function","size":16588,"label":"K20444"},{"category":"Function","size":55678,"label":"K07496"},{"category":"Function","size":14956,"label":"K17320"},{"category":"Function","size":23650,"label":"K05515"},{"category":"Function","size":32870,"label":"K03701"},{"category":"Function","size":21044,"label":"K02025"},{"category":"Function","size":30966,"label":"K01870"},{"category":"Function","size":20196,"label":"K15923"},{"category":"Function","size":23164,"label":"K07407"},{"category":"Function","size":21294,"label":"K00975"},{"category":"Function","size":17618,"label":"K06113"},{"category":"Function","size":34690,"label":"K03466"},{"category":"Function","size":24310,"label":"K02027"},{"category":"Function","size":20224,"label":"K03546"},{"category":"Function","size":27176,"label":"K03723"},{"category":"Function","size":34428,"label":"K07484"},{"category":"Function","size":33518,"label":"K08303"},{"category":"Function","size":46108,"label":"K03544"},{"category":"Function","size":29522,"label":"K01915"},{"category":"Function","size":35848,"label":"K01224"},{"category":"Function","size":32522,"label":"K04043"},{"category":"Function","size":17572,"label":"K10117"},{"category":"Function","size":36106,"label":"K01811"},{"category":"Function","size":23148,"label":"K03763"},{"category":"Function","size":30026,"label":"K02335"},{"category":"Function","size":29824,"label":"K20074"},{"category":"Function","size":30120,"label":"K12132"},{"category":"Function","size":21606,"label":"K03324"},{"category":"Function","size":22440,"label":"K04487"},{"category":"Function","size":26564,"label":"K01952"},{"category":"Function","size":24416,"label":"K01876"},{"category":"Function","size":29960,"label":"K01448"},{"category":"Function","size":25768,"label":"K01873"},{"category":"Function","size":17994,"label":"K02005"},{"category":"Function","size":29278,"label":"K01897"},{"category":"Function","size":22450,"label":"K03569"},{"category":"Function","size":24966,"label":"K02519"},{"category":"Function","size":21798,"label":"K03100"},{"category":"Function","size":26982,"label":"K00951"},{"category":"Function","size":23088,"label":"K07079"},{"category":"Function","size":16232,"label":"K05568"},{"category":"Function","size":23198,"label":"K00991"},{"category":"Function","size":23862,"label":"K06919"},{"category":"Function","size":23294,"label":"K01874"},{"category":"Function","size":23730,"label":"K03070"},{"category":"Function","size":18712,"label":"K03407"},{"category":"Function","size":18426,"label":"K01091"}]}

index.html

<!DOCTYPE html>
<head>
  <meta charset="utf-8">
  <script src="https://d3js.org/d3.v3.min.js"></script>
  <script src="https://cdnjs.cloudflare.com/ajax/libs/underscore.js/1.8.3/underscore-min.js"></script>
  
  <script src="myJS.js"></script>
  
    <style>
        svg{ border: 1px solid gray; }
        #abc{ margin-top: 50px; }
        #abc span{
            display: inline-block;
            width: 35px;
            background-color: steelblue;
            margin: auto 5px;
            border-radius: 5px;
            text-align: center;
            cursor: pointer;
        }
        #abc span.selected{
            background-color: green;
            color: white;
        }
    </style>
</head>

<body>
  
<div>
   <div id="abc"></div>
    <div id="container"></div>
</div>
  
  <script>
    d3.select("#abc")
        .selectAll("span")
        .data(d3.range(1, 7))
        .enter()
        .append("span")
        .each(function(d){
            var self = d3.select(this);
            self.text(d);
            self.on("click", function(e){
                if(!this.classList.contains("selected")){
                    d3.json("cor_" + e + ".json", function(err, data){
                        if(err){ return console.log(err); }

                        d3.svg.hNetwork("container", data);
                    });
                    d3.selectAll("#abc span").classed("selected", false);
                    this.classList.add("selected");
                }
            });
        });

    d3.select("#abc span").node().click();
    
    d3.select(self.frameElement).style({width: 950 + "px", height: 750 + "px"});
  </script>
</body>

myJS.js

d3.svg.hNetwork = function(id, options){
    var opt = {
        title          : "",
        size           : [650, 650],
        isLableVisible : false,
        linkType       : "line",
        monoColor      : null,
        charge         : -300,
        linkDistance   : 50,
        gravity        : 0.1
    };
    
    _.extend(opt, options);
    
    // Data checking
    var badDate = [];
    (function(){
        
        var categories = d3.set(opt.nodes.map(function(d){ return d.category; }));
        var colorGroups = [], unMathes = [], nodesLength = opt.nodes.length, badIndex = [];

        // "linkType" only has two options: "line" or "arc"
        if(!_.contains(["line", "arc"], opt.linkType)){
            badDate.push("\"linkType\" to be either \"line\" or \"arc\".");
        }

        // Cheacking if "categoryColor" matches with nodes category
        if(opt.categoryColor){
            colorGroups = _.keys(opt.categoryColor);
            categories.forEach(function(d){
                if(!_.contains(colorGroups, d)){ unMathes.push(d); }
            });
            if(unMathes.length > 0){
                badDate.push("Following type(s) are not included in \"categoryColor\": " + unMathes.join(", ") + ".");
            }
        }
        
        // If "links" is null or undefined assigned as an empty array
        if(!opt.links){ opt.links = []; }
        
        // Checking if "source" or "target" index out of nodes' range.
        if(opt.links.length > 0){
            opt.links.forEach(function(d, i){
                if((d.source < 0 || d.source >= nodesLength) || (d.target < 0 || d.target >= nodesLength)){
                    badIndex.push(i);
                }
            });
            if(badIndex.length > 0){
                badDate.push("Following index of \"links\" item contain \"source\" or \"target\" index that out of \"nodes\" range[0-" +
                             (nodesLength - 1) + "]: " +
                             badIndex.join(", ") + ".");
            }
        }
        
        // Both "monoColor" and "categoryColor" are null is inacceptable
        if(!opt.monoColor && !opt.categoryColor){
            badDate.push("\"monoColor\" and \"categoryColor\" can not both null.");
        }
        
        // "nodes" should have at lest one item.
        if(!opt.nodes.length){
            badDate.push("\"nodes\" is empty.");
        }
        
    })();
    if(badDate.length){ alert("MajorBio:\n" + badDate.join("\n")); return; }
    
    
    
    var margin = { top: 50, right: 20, bottom: 30, left: 20 },
        svgWidth, svgHeight, minNetDim = 300,
        
        // d3 collection instances
        svg, gNet, gLegend, links, nodes, promptText,
        
        newLinks,
        
        // path generator
        connect = linking(opt.linkType),
        
        force = d3.layout.force()
                .charge(opt.charge)
                .gravity(opt.gravity)
                .linkDistance(opt.linkDistance),
        zoom = d3.behavior.zoom()
                .scaleExtent([0.1, 10])
                .on("zoom", function(){
                    d3.select(this).select("g")
                        .attr(
                            "transform", "scale(" +
                             d3.event.scale + ")translate(" +
                             d3.event.translate + ")"
                        );
                }),
        strokeScale = d3.scale.linear().range([1, 4]),
        radiusScale = d3.scale.sqrt().range([8, 16]),
        
        span = 10,
        
        lgdItems = opt.categoryColor ? _.keys(opt.categoryColor) : [""],
        lgdWidth, lgdRadius = 5,
        lgdRowHeight = lgdRadius * 2 + 5,
        lgdHeight = lgdItems.length * lgdRowHeight;
        
    
    svg = d3.select("#" + id)
        .html("")
        .append("svg")
        .attr({
            width   : 50,
            height  : 50,
            version : 1.1,
            xmlns   : "http://www.w3.org/2000/svg"
        })
        .style("font", "12px arial, sans-serif");

    // Data processing
    (function(){
        var isRendered = (!fetchLength("ABCDEF") || !fetchLength("ABCDEF").width) ? false : true;
        var mainTitleWidth, netWidth, netHeight;
        
       strokeScale.domain(d3.extent(opt.links.map(function(d){ return Math.abs(d.strokeWidth); })));
       radiusScale.domain(d3.extent(opt.nodes.map(function(d){ return d.size; })));
        
        if(isRendered){
            lgdWidth = fetchLength(_.max(lgdItems, "length")).width;
            mainTitleWidth = fetchLength(opt.title, {font: "15px"}).width;
        }else{
            lgdWidth = _.max(lgdItems, "length").length * 8.2;
            mainTitleWidth = opt.title.length * 8.5;
        }
        lgdWidth = Math.ceil(lgdWidth) + lgdRadius * 2 + 5;
        mainTitleWidth = Math.ceil(mainTitleWidth);
        
        // If all nodes are set to a single color I will ignore legend items
        if(opt.monoColor){ lgdWidth = 0; lgdHeight = 0; }
        
        netWidth  = Math.max(minNetDim, mainTitleWidth);
        netHeight = Math.max(minNetDim, lgdHeight);
        svgWidth  = netWidth + margin.left + margin.right + span + lgdWidth;
        svgHeight = netHeight + margin.top + margin.bottom;
        
        if(svgWidth < opt.size[0]){
            svgWidth = opt.size[0];
            netWidth = svgWidth - (margin.left + margin.right + span + lgdWidth);
        }
        if(svgHeight < opt.size[1]){
            svgHeight = opt.size[1];
            netHeight = svgHeight - (margin.top + margin.bottom);
        }
        
        
       // Extract data and update force layout
       force
           .size([netWidth, netHeight])
           .nodes(opt.nodes.map(function(d){
                return {
                    label   : d.label,
                    category: d.category,
                    r       : radiusScale(d.size),
                    fill    : opt.monoColor ? opt.monoColor : opt.categoryColor[d.category]
                };
            }));
        
        if(opt.linkType === "line"){
            force.links(opt.links.map(function(d){
                return {
                    source        : d.source,
                    target        : d.target,
                    stroke        : d.strokeWidth > 0 ? "#b90000" : "#245613",
                    "stroke-width": strokeScale(Math.abs(d.strokeWidth))
                };
            }));
        }
        force.start();
        
        
        newLinks = opt.links.map(function(d){
            return {
                source        : force.nodes()[d.source],
                target        : force.nodes()[d.target],
                stroke        : d.strokeWidth > 0 ? "#b90000" : "#245613",
                "stroke-width": strokeScale(Math.abs(d.strokeWidth))
            };
        });
        
    })(); // Anonymous Function END
    
    
    // Update SVG dimension after data processing
    svg.attr({width: svgWidth, height: svgHeight});
    gNet = svg.append("g")
        .attr("class", "gNet")
        .call(function(g){
            g.append("rect")
             .attr({
                class : "net-background",
                width : svgWidth,
                height: svgHeight,
                fill  : "transparent"
            });
        })
        .call(zoom)
        .append("g");
    
    // Fire the zoom effect
    zoom.scale(0.5)
        .translate(force.size().map(function(d){ return d * 0.5; }))
        .event(svg.select(".gNet"));
    
    // Legend group
    gLegend = svg.append("g").attr({
        class: "gLegend",
        transform: "translate(" + [margin.left + force.size()[0] + span, margin.top] + ")"
    });
    
    // Main title
    svg.append("text").attr({
        class         : "main-title",
        "text-anchor" : "middle",
        x             : margin.left + force.size()[0] * 0.5,
        y             : margin.top - 10
    })
    .style("font", "15px arial, sans-serif")
    .text(opt.title);
    
    // Text node will show node lable when mouse hooverring on it
    promptText = svg.append("text").attr({
        class : "prompt-text",
        x     : margin.left,
        y     : svgHeight - 15
    })
    .text("");

    // If "monoColor" is not null there will be a legend at right side
    if(!opt.monoColor){
        gLegend.append("rect").attr({
            class         : "legend-background",
            x             : -5,
            y             : -5,
            rx            : 5,
            ry            : 5,
            width         : lgdWidth + 10,
            height        : lgdHeight + 10,
            fill          : "transparent"
        });

        gLegend.selectAll(".legend-item")
            .data(_.map(opt.categoryColor, function(value, key){ return {name: key, color: value}; }))
            .enter()
            .append("g")
            .attr({
                "class": "legend-item",
                 transform: function(d, i){ return "translate(0," + (i * lgdRowHeight + lgdRadius + 3) + ")"; }
            })
            .each(function(d){
                d3.select(this).append("circle").attr({cx: lgdRadius, r: lgdRadius, fill: d.color});
                d3.select(this).append("text").attr({x: lgdRadius * 2 + 3, y: 5}).text(d.name);
            });
    }

    
    // Network links & nodes and ticking event
    links = gNet.selectAll("path")
        //.data(newLinks)
        .data(newLinks)
        .enter()
        .append("path")
        .attr({
            stroke          : function(d){ return d.stroke; },
            "stroke-width"  : function(d){ return d["stroke-width"]; },
            "stroke-opacity": 0.4,
            fill            : "none",
            d               : connect
        });
    nodes = gNet.selectAll("g.node")
        .data(force.nodes())
        .enter()
        .append("g")
        .attr("class", "node")
        .call(force.drag()
              // Eliminate event conflicts from zoom
              .on("dragstart", function(){ d3.event.sourceEvent.stopPropagation(); })
              .on("drag", function(d){
                    links.attr("stroke-opacity", function(j){
                        return (j.source.index === d.index || j.target.index === d.index) ? 1 : 0.1;
                    });
                })
              .on("dragend", function(){ links.attr("stroke-opacity", 0.4); })
             );

    nodes
        .each(function(d){
            var self = d3.select(this);
            self.append("circle")
                .on("mouseenter", function(d){ promptText.text(d.label); })
                .on("mouseleave", function() { promptText.text(""); })
                .attr({fill: d.fill, r: d.r});
            self.append("text")
                .attr({
                    y             : -(d.r + 3),
                    "text-anchor" : "middle"
                })
                .style({
                    display               : opt.isLabelVisible ? "block" : "none",
                    "pointer-events"      : "none",
                    "-webkit-user-select" : "none",
                    "-moz-user-select"    : "none",
                    "-ms-user-select"     : "none",
                    "user-select"         : "none"
                })
                .text(d.label);
        });
    

    force.on('tick', function() {
        links.attr("d", connect);
        nodes.attr("transform", function(d){ return "translate(" + [d.x, d.y] + ")"; });
    });
    
    
    // Fix all nodes when network cool down
    (function(){
        var timeID = setInterval(function(){
            if(force.alpha() === 0){
                nodes.each(function(d){ d.fixed = true; });
                clearInterval(timeID);
            }
        }, 100);
    })();
    

    // Return a path generator based on connection line type: "line" or "arc"
    function linking(type){
        if(!type || type === "line"){
            return function(d){
                return "M" + d.source.x + " " + d.source.y +
                       "L" + d.target.x + " " + d.target.y;
            };
        }else{
            return function(d){
                var distance = Math.sqrt(
                        (d.source.x - d.target.x) * (d.source.x - d.target.x),
                        (d.source.y - d.target.y) * (d.source.y - d.target.y)
                    ),
                    rad = Math.atan2(d.target.y - d.source.y, d.target.x - d.source.x),
                    Qpoint = [d.source.x + distance * 0.5 * Math.cos(rad + 0.26),
                              d.source.y + distance * 0.5 * Math.sin(rad + 0.26)];
                return "M" + d.source.x + "," + d.source.y +
                       " Q" + Qpoint + " " + d.target.x + "," + d.target.y;
            };
        }
    }
    
    
    function fetchLength(str, style){
        if(!style){ style = { display: "block" }; }
        var node = svg.append("text").text(str).style(style).node(), box;
        try{ box = node.getBBox(); }catch( e ){ box = null; }
        d3.select(node).remove();
        
        return box;
    } // fetchLength END
    
    
}; // d3.svg.hNetwork END

thumbnail.png