strace.log

execve("/usr/bin/avogadro", ["avogadro"], 0x7fffc9f5de70 /* 159 vars */) = 0
brk(NULL)                               = 0x55d8abb74000
access("/etc/ld.so.preload", R_OK)      = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, "/etc/ld.so.cache", O_RDONLY|O_CLOEXEC) = 3
fstat(3, {st_mode=S_IFREG|0644, st_size=254708, ...}) = 0
mmap(NULL, 254708, PROT_READ, MAP_PRIVATE, 3, 0) = 0x7fb0212ac000
close(3)                                = 0
openat(AT_FDCWD, "/lib64/libc.so.6", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\3\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\240\33\2\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=2065784, ...}) = 0
mmap(NULL, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7fb0212aa000
mmap(NULL, 3922656, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb020d08000
mprotect(0x7fb020ebc000, 2097152, PROT_NONE) = 0
mmap(0x7fb0210bc000, 24576, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1b4000) = 0x7fb0210bc000
mmap(0x7fb0210c2000, 15072, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7fb0210c2000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libQtOpenGL.so.4", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\0\255\2\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=1056120, ...}) = 0
mmap(NULL, 3154752, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb020a05000
mprotect(0x7fb020aff000, 2097152, PROT_NONE) = 0
mmap(0x7fb020cff000, 32768, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0xfa000) = 0x7fb020cff000
mmap(0x7fb020d07000, 832, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7fb020d07000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libQtGui.so.4", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\3\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\220Y\34\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=11462456, ...}) = 0
mmap(NULL, 13570464, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01fd13000
mprotect(0x7fb0207bc000, 2097152, PROT_NONE) = 0
mmap(0x7fb0209bc000, 282624, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0xaa9000) = 0x7fb0209bc000
mmap(0x7fb020a01000, 12704, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7fb020a01000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libQtCore.so.4", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\3\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\20\247\7\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=3098696, ...}) = 0
mmap(NULL, 5196592, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01f81e000
mprotect(0x7fb01fb08000, 2093056, PROT_NONE) = 0
mmap(0x7fb01fd07000, 45056, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x2e9000) = 0x7fb01fd07000
mmap(0x7fb01fd12000, 2864, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7fb01fd12000
close(3)                                = 0
openat(AT_FDCWD, "/usr/local/lib/libopenbabel.so.5", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\3\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\320\263U\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=47327072, ...}) = 0
mmap(NULL, 12895088, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01ebd1000
mprotect(0x7fb01f5dc000, 2093056, PROT_NONE) = 0
mmap(0x7fb01f7db000, 253952, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0xa0a000) = 0x7fb01f7db000
mmap(0x7fb01f819000, 17264, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7fb01f819000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libavogadro.so.1", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\3\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0@o\4\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=1173592, ...}) = 0
mmap(NULL, 3269504, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01e8b2000
mprotect(0x7fb01e9c8000, 2097152, PROT_NONE) = 0
mmap(0x7fb01ebc8000, 36864, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x116000) = 0x7fb01ebc8000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libX11.so.6", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\360\2\2\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=1314368, ...}) = 0
mmap(NULL, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7fb0212a8000
mmap(NULL, 3411320, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01e571000
mprotect(0x7fb01e6ac000, 2097152, PROT_NONE) = 0
mmap(0x7fb01e8ac000, 24576, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x13b000) = 0x7fb01e8ac000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libstdc++.so.6", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\3\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\2609\t\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=1598576, ...}) = 0
mmap(NULL, 3706880, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01e1e8000
mprotect(0x7fb01e363000, 2093056, PROT_NONE) = 0
mmap(0x7fb01e562000, 49152, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x17a000) = 0x7fb01e562000
mmap(0x7fb01e56e000, 12288, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7fb01e56e000
close(3)                                = 0
openat(AT_FDCWD, "/lib64/libm.so.6", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\3\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\340\271\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=1763456, ...}) = 0
mmap(NULL, 3744064, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01de55000
mprotect(0x7fb01dfe7000, 2093056, PROT_NONE) = 0
mmap(0x7fb01e1e6000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x191000) = 0x7fb01e1e6000
close(3)                                = 0
openat(AT_FDCWD, "/lib64/libgcc_s.so.1", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\200/\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=96680, ...}) = 0
mmap(NULL, 2192432, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01dc3d000
mprotect(0x7fb01dc54000, 2093056, PROT_NONE) = 0
mmap(0x7fb01de53000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x16000) = 0x7fb01de53000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libfreetype.so.6", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\20\321\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=683296, ...}) = 0
mmap(NULL, 2778368, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01d996000
mprotect(0x7fb01da36000, 2093056, PROT_NONE) = 0
mmap(0x7fb01dc35000, 32768, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x9f000) = 0x7fb01dc35000
close(3)                                = 0
openat(AT_FDCWD, "/lib64/libdl.so.2", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0P\16\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=18704, ...}) = 0
mmap(NULL, 2109712, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01d792000
mprotect(0x7fb01d795000, 2093056, PROT_NONE) = 0
mmap(0x7fb01d994000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x2000) = 0x7fb01d994000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libGL.so.1", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\240X\4\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=588160, ...}) = 0
mmap(NULL, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7fb0212a6000
mmap(NULL, 2689264, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01d501000
mprotect(0x7fb01d577000, 2093056, PROT_NONE) = 0
mmap(0x7fb01d776000, 110592, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x75000) = 0x7fb01d776000
mmap(0x7fb01d791000, 2288, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7fb01d791000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libXrender.so.1", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0P\35\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=43552, ...}) = 0
mmap(NULL, 2138760, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01d2f6000
mprotect(0x7fb01d2ff000, 2097152, PROT_NONE) = 0
mmap(0x7fb01d4ff000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x9000) = 0x7fb01d4ff000
close(3)                                = 0
openat(AT_FDCWD, "/lib64/libpthread.so.0", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0000b\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=145232, ...}) = 0
mmap(NULL, 2221152, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01d0d7000
mprotect(0x7fb01d0f0000, 2097152, PROT_NONE) = 0
mmap(0x7fb01d2f0000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x19000) = 0x7fb01d2f0000
mmap(0x7fb01d2f2000, 13408, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7fb01d2f2000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libglib-2.0.so.0", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\340\335\1\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=1143896, ...}) = 0
mmap(NULL, 3242024, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01cdbf000
mprotect(0x7fb01ced5000, 2093056, PROT_NONE) = 0
mmap(0x7fb01d0d4000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x115000) = 0x7fb01d0d4000
mmap(0x7fb01d0d6000, 2088, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7fb01d0d6000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libpng16.so.16", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\20^\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=276456, ...}) = 0
mmap(NULL, 2371600, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01cb7b000
mprotect(0x7fb01cbbd000, 2097152, PROT_NONE) = 0
mmap(0x7fb01cdbd000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x42000) = 0x7fb01cdbd000
close(3)                                = 0
openat(AT_FDCWD, "/lib64/libz.so.1", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0@'\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=92192, ...}) = 0
mmap(NULL, 2187280, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01c964000
mprotect(0x7fb01c97a000, 2093056, PROT_NONE) = 0
mmap(0x7fb01cb79000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x15000) = 0x7fb01cb79000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libgobject-2.0.so.0", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\260\270\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=343080, ...}) = 0
mmap(NULL, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7fb0212a4000
mmap(NULL, 2440904, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01c710000
mprotect(0x7fb01c762000, 2097152, PROT_NONE) = 0
mmap(0x7fb01c962000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x52000) = 0x7fb01c962000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libSM.so.6", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\0\36\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=30984, ...}) = 0
mmap(NULL, 2126176, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01c508000
mprotect(0x7fb01c50f000, 2093056, PROT_NONE) = 0
mmap(0x7fb01c70e000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x6000) = 0x7fb01c70e000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libICE.so.6", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\20V\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=102496, ...}) = 0
mmap(NULL, 2212160, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01c2eb000
mprotect(0x7fb01c303000, 2093056, PROT_NONE) = 0
mmap(0x7fb01c502000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x17000) = 0x7fb01c502000
mmap(0x7fb01c504000, 12608, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7fb01c504000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libXi.so.6", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\20%\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=68040, ...}) = 0
mmap(NULL, 2163368, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01c0da000
mprotect(0x7fb01c0ea000, 2093056, PROT_NONE) = 0
mmap(0x7fb01c2e9000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0xf000) = 0x7fb01c2e9000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libXrandr.so.2", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\300\37\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=43360, ...}) = 0
mmap(NULL, 2138568, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01becf000
mprotect(0x7fb01bed9000, 2093056, PROT_NONE) = 0
mmap(0x7fb01c0d8000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x9000) = 0x7fb01c0d8000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libXfixes.so.3", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\200\27\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=22632, ...}) = 0
mmap(NULL, 2117912, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01bcc9000
mprotect(0x7fb01bcce000, 2093056, PROT_NONE) = 0
mmap(0x7fb01becd000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x4000) = 0x7fb01becd000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libXcursor.so.1", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0000-\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=43712, ...}) = 0
mmap(NULL, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7fb0212a2000
mmap(NULL, 2138904, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01babe000
mprotect(0x7fb01bac8000, 2093056, PROT_NONE) = 0
mmap(0x7fb01bcc7000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x9000) = 0x7fb01bcc7000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libXinerama.so.1", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\320\v\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=10440, ...}) = 0
mmap(NULL, 2105640, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01b8bb000
mprotect(0x7fb01b8bd000, 2093056, PROT_NONE) = 0
mmap(0x7fb01babc000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1000) = 0x7fb01babc000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libfontconfig.so.1", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\340w\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=282080, ...}) = 0
mmap(NULL, 2377768, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01b676000
mprotect(0x7fb01b6b5000, 2093056, PROT_NONE) = 0
mmap(0x7fb01b8b4000, 28672, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x3e000) = 0x7fb01b8b4000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libXext.so.6", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\340;\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=73416, ...}) = 0
mmap(NULL, 2169112, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01b464000
mprotect(0x7fb01b475000, 2093056, PROT_NONE) = 0
mmap(0x7fb01b674000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x10000) = 0x7fb01b674000
close(3)                                = 0
openat(AT_FDCWD, "/lib64/librt.so.1", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\360!\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=42296, ...}) = 0
mmap(NULL, 2128864, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01b25c000
mprotect(0x7fb01b263000, 2093056, PROT_NONE) = 0
mmap(0x7fb01b462000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x6000) = 0x7fb01b462000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libGLU.so.1", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\340J\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=445184, ...}) = 0
mmap(NULL, 2540192, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01afef000
mprotect(0x7fb01b05a000, 2097152, PROT_NONE) = 0
mmap(0x7fb01b25a000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x6b000) = 0x7fb01b25a000
close(3)                                = 0
mmap(NULL, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7fb0212a0000
openat(AT_FDCWD, "/usr/lib64/libGLEW.so.2.1", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\20\232\5\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=686160, ...}) = 0
mmap(NULL, 2804776, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01ad42000
mprotect(0x7fb01addf000, 2093056, PROT_NONE) = 0
mmap(0x7fb01afde000, 49152, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x9c000) = 0x7fb01afde000
mmap(0x7fb01afea000, 19496, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7fb01afea000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libpython2.7.so.1.0", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0@7\4\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0644, st_size=2237800, ...}) = 0
mmap(NULL, 4468400, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01a8ff000
mprotect(0x7fb01aae2000, 2093056, PROT_NONE) = 0
mmap(0x7fb01ace1000, 262144, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1e2000) = 0x7fb01ace1000
mmap(0x7fb01ad21000, 134832, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7fb01ad21000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libboost_python-py2_7.so.1.66.0", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\3\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0@\262\6\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=833160, ...}) = 0
mmap(NULL, 2929048, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01a633000
mprotect(0x7fb01a6f7000, 2097152, PROT_NONE) = 0
mmap(0x7fb01a8f7000, 28672, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0xc4000) = 0x7fb01a8f7000
mmap(0x7fb01a8fe000, 408, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7fb01a8fe000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libxcb.so.1", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\220\315\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=166864, ...}) = 0
mmap(NULL, 2262056, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01a40a000
mprotect(0x7fb01a432000, 2093056, PROT_NONE) = 0
mmap(0x7fb01a631000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x27000) = 0x7fb01a631000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libbz2.so.1", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\300\24\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=120160, ...}) = 0
mmap(NULL, 2215240, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01a1ed000
mprotect(0x7fb01a209000, 2093056, PROT_NONE) = 0
mmap(0x7fb01a408000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1b000) = 0x7fb01a408000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libGLX.so.0", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0 3\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=72296, ...}) = 0
mmap(NULL, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7fb02129e000
mmap(NULL, 2299488, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb019fbb000
mprotect(0x7fb019fcb000, 2097152, PROT_NONE) = 0
mmap(0x7fb01a1cb000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x10000) = 0x7fb01a1cb000
mmap(0x7fb01a1cd000, 128608, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7fb01a1cd000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libGLdispatch.so.0", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0@\355\3\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=612872, ...}) = 0
mmap(NULL, 2839664, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb019d05000
mprotect(0x7fb019d73000, 2093056, PROT_NONE) = 0
mmap(0x7fb019f72000, 167936, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x6d000) = 0x7fb019f72000
mmap(0x7fb019f9b000, 128112, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7fb019f9b000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libpcre.so.1", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\200\27\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=575800, ...}) = 0
mmap(NULL, 2671080, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb019a78000
mprotect(0x7fb019b04000, 2093056, PROT_NONE) = 0
mmap(0x7fb019d03000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x8b000) = 0x7fb019d03000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libffi.so.7", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\340\33\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=39440, ...}) = 0
mmap(NULL, 2135624, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01986e000
mprotect(0x7fb019876000, 2097152, PROT_NONE) = 0
mmap(0x7fb019a76000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x8000) = 0x7fb019a76000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libuuid.so.1", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\20\31\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=30840, ...}) = 0
mmap(NULL, 2125848, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb019666000
mprotect(0x7fb01966c000, 2097152, PROT_NONE) = 0
mmap(0x7fb01986c000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x6000) = 0x7fb01986c000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libexpat.so.1", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\340=\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=203008, ...}) = 0
mmap(NULL, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7fb02129c000
mmap(NULL, 2298104, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb019434000
mprotect(0x7fb019463000, 2097152, PROT_NONE) = 0
mmap(0x7fb019663000, 12288, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x2f000) = 0x7fb019663000
close(3)                                = 0
openat(AT_FDCWD, "/lib64/libutil.so.1", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0p\16\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=14048, ...}) = 0
mmap(NULL, 2105616, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb019231000
mprotect(0x7fb019233000, 2093056, PROT_NONE) = 0
mmap(0x7fb019432000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1000) = 0x7fb019432000
close(3)                                = 0
openat(AT_FDCWD, "/usr/lib64/libXau.so.6", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0`\17\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=14536, ...}) = 0
mmap(NULL, 2109728, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb01902d000
mprotect(0x7fb019030000, 2093056, PROT_NONE) = 0
mmap(0x7fb01922f000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x2000) = 0x7fb01922f000
close(3)                                = 0
mmap(NULL, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7fb02129a000
mmap(NULL, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7fb021298000
mmap(NULL, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7fb021296000
arch_prctl(ARCH_SET_FS, 0x7fb0212995c0) = 0
mprotect(0x7fb0210bc000, 16384, PROT_READ) = 0
mprotect(0x7fb01922f000, 4096, PROT_READ) = 0
mprotect(0x7fb019432000, 4096, PROT_READ) = 0
mprotect(0x7fb019663000, 8192, PROT_READ) = 0
mprotect(0x7fb01986c000, 4096, PROT_READ) = 0
mprotect(0x7fb019a76000, 4096, PROT_READ) = 0
mprotect(0x7fb019d03000, 4096, PROT_READ) = 0
mprotect(0x7fb01d994000, 4096, PROT_READ) = 0
mprotect(0x7fb019f72000, 163840, PROT_READ) = 0
mprotect(0x7fb01a631000, 4096, PROT_READ) = 0
mprotect(0x7fb01e8ac000, 4096, PROT_READ) = 0
mprotect(0x7fb01d2f0000, 4096, PROT_READ) = 0
mprotect(0x7fb01a1cb000, 4096, PROT_READ) = 0
mprotect(0x7fb01a408000, 4096, PROT_READ) = 0
mprotect(0x7fb01e1e6000, 4096, PROT_READ) = 0
mprotect(0x7fb01de53000, 4096, PROT_READ) = 0
mprotect(0x7fb01e562000, 40960, PROT_READ) = 0
mprotect(0x7fb01ace1000, 8192, PROT_READ) = 0
mmap(NULL, 12288, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7fb021293000
mprotect(0x7fb01a8f7000, 8192, PROT_READ) = 0
mprotect(0x7fb01d776000, 106496, PROT_READ) = 0
mprotect(0x7fb01afde000, 45056, PROT_READ) = 0
mprotect(0x7fb01b25a000, 4096, PROT_READ) = 0
mprotect(0x7fb01b462000, 4096, PROT_READ) = 0
mprotect(0x7fb01b674000, 4096, PROT_READ) = 0
mprotect(0x7fb01cb79000, 4096, PROT_READ) = 0
mprotect(0x7fb01cdbd000, 4096, PROT_READ) = 0
mprotect(0x7fb01dc35000, 28672, PROT_READ) = 0
mprotect(0x7fb01b8b4000, 8192, PROT_READ) = 0
mprotect(0x7fb01babc000, 4096, PROT_READ) = 0
mprotect(0x7fb01d4ff000, 4096, PROT_READ) = 0
mprotect(0x7fb01becd000, 4096, PROT_READ) = 0
mprotect(0x7fb01bcc7000, 4096, PROT_READ) = 0
mprotect(0x7fb01c0d8000, 4096, PROT_READ) = 0
mprotect(0x7fb01c2e9000, 4096, PROT_READ) = 0
mprotect(0x7fb01c502000, 4096, PROT_READ) = 0
mprotect(0x7fb01c70e000, 4096, PROT_READ) = 0
mprotect(0x7fb01d0d4000, 4096, PROT_READ) = 0
mprotect(0x7fb01c962000, 4096, PROT_READ) = 0
mprotect(0x7fb01fd07000, 40960, PROT_READ) = 0
mprotect(0x7fb0209bc000, 253952, PROT_READ) = 0
mprotect(0x7fb020cff000, 12288, PROT_READ) = 0
mprotect(0x7fb01f7db000, 53248, PROT_READ) = 0
writev(2, [{iov_base="avogadro", iov_len=8}, {iov_base=": ", iov_len=2}, {iov_base="symbol lookup error", iov_len=19}, {iov_base=": ", iov_len=2}, {iov_base="/usr/lib64/libavogadro.so.1", iov_len=27}, {iov_base=": ", iov_len=2}, {iov_base="undefined symbol: _ZN9OpenBabel5"..., iov_len=115}, {iov_base="", iov_len=0}, {iov_base="", iov_len=0}, {iov_base="\n", iov_len=1}], 10avogadro: symbol lookup error: /usr/lib64/libavogadro.so.1: undefined symbol: _ZN9OpenBabel5OBMol8NextBondERN9__gnu_cxx17__normal_iteratorIPPNS_6OBBondESt6vectorIS4_SaIS4_EEEE
) = 176
exit_group(127)                         = ?
+++ exited with 127 +++