Created
October 18, 2020 05:45
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(partial) EasyBuild log for failed build of /dev/shm/tmp/eb-koyRFg/files_pr6229/s/Siesta/Siesta-4.0-foss-2017b.eb (PR #6229)
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| == 2020-10-18 13:45:05,642 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable CPPFLAGS to -I/opt/apps/centos7/naples/software/netCDF-Fortran/4.4.4-foss-2017b/include -I/opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/include -I/opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/include -I/opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include | |
| == 2020-10-18 13:45:05,643 environment.py:97 INFO Environment variable CPPFLAGS set to -I/opt/apps/centos7/naples/software/netCDF-Fortran/4.4.4-foss-2017b/include -I/opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/include -I/opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/include -I/opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include (previously undefined) | |
| == 2020-10-18 13:45:05,643 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/opt/apps/centos7/naples/software/netCDF-Fortran/4.4.4-foss-2017b/include -I/opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/include -I/opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/include -I/opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include (previously undefined) | |
| == 2020-10-18 13:45:05,643 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable CXX to mpicxx | |
| == 2020-10-18 13:45:05,643 environment.py:97 INFO Environment variable CXX set to mpicxx (previously undefined) | |
| == 2020-10-18 13:45:05,643 environment.py:97 INFO Environment variable EBVARCXX set to mpicxx (previously undefined) | |
| == 2020-10-18 13:45:05,644 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable CXXFLAGS to -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno | |
| == 2020-10-18 13:45:05,644 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno (previously undefined) | |
| == 2020-10-18 13:45:05,644 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno (previously undefined) | |
| == 2020-10-18 13:45:05,644 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable CXX_SEQ to g++ | |
| == 2020-10-18 13:45:05,644 environment.py:97 INFO Environment variable CXX_SEQ set to g++ (previously undefined) | |
| == 2020-10-18 13:45:05,645 environment.py:97 INFO Environment variable EBVARCXX_SEQ set to g++ (previously undefined) | |
| == 2020-10-18 13:45:05,645 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable F77 to mpifort | |
| == 2020-10-18 13:45:05,645 environment.py:97 INFO Environment variable F77 set to mpifort (previously undefined) | |
| == 2020-10-18 13:45:05,645 environment.py:97 INFO Environment variable EBVARF77 set to mpifort (previously undefined) | |
| == 2020-10-18 13:45:05,645 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable F77_SEQ to gfortran | |
| == 2020-10-18 13:45:05,646 environment.py:97 INFO Environment variable F77_SEQ set to gfortran (previously undefined) | |
| == 2020-10-18 13:45:05,646 environment.py:97 INFO Environment variable EBVARF77_SEQ set to gfortran (previously undefined) | |
| == 2020-10-18 13:45:05,646 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable F90 to mpifort | |
| == 2020-10-18 13:45:05,646 environment.py:97 INFO Environment variable F90 set to mpifort (previously undefined) | |
| == 2020-10-18 13:45:05,646 environment.py:97 INFO Environment variable EBVARF90 set to mpifort (previously undefined) | |
| == 2020-10-18 13:45:05,647 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable F90FLAGS to -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno | |
| == 2020-10-18 13:45:05,647 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno (previously undefined) | |
| == 2020-10-18 13:45:05,647 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno (previously undefined) | |
| == 2020-10-18 13:45:05,647 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable F90_SEQ to gfortran | |
| == 2020-10-18 13:45:05,647 environment.py:97 INFO Environment variable F90_SEQ set to gfortran (previously undefined) | |
| == 2020-10-18 13:45:05,648 environment.py:97 INFO Environment variable EBVARF90_SEQ set to gfortran (previously undefined) | |
| == 2020-10-18 13:45:05,648 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable FC to mpifort | |
| == 2020-10-18 13:45:05,648 environment.py:97 INFO Environment variable FC set to mpifort (previously undefined) | |
| == 2020-10-18 13:45:05,648 environment.py:97 INFO Environment variable EBVARFC set to mpifort (previously undefined) | |
| == 2020-10-18 13:45:05,649 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable FCFLAGS to -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno | |
| == 2020-10-18 13:45:05,649 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno (previously undefined) | |
| == 2020-10-18 13:45:05,649 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno (previously undefined) | |
| == 2020-10-18 13:45:05,649 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable FC_SEQ to gfortran | |
| == 2020-10-18 13:45:05,649 environment.py:97 INFO Environment variable FC_SEQ set to gfortran (previously undefined) | |
| == 2020-10-18 13:45:05,650 environment.py:97 INFO Environment variable EBVARFC_SEQ set to gfortran (previously undefined) | |
| == 2020-10-18 13:45:05,650 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable FFLAGS to -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno | |
| == 2020-10-18 13:45:05,650 environment.py:97 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno (previously undefined) | |
| == 2020-10-18 13:45:05,650 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno (previously undefined) | |
| == 2020-10-18 13:45:05,650 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable FFTW_INC_DIR to /opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/include | |
| == 2020-10-18 13:45:05,651 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/include (previously undefined) | |
| == 2020-10-18 13:45:05,651 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/include (previously undefined) | |
| == 2020-10-18 13:45:05,651 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable FFTW_LIB_DIR to /opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/lib | |
| == 2020-10-18 13:45:05,651 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/lib (previously undefined) | |
| == 2020-10-18 13:45:05,651 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/lib (previously undefined) | |
| == 2020-10-18 13:45:05,652 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS to libfftw3_mpi.a,libfftw3.a | |
| == 2020-10-18 13:45:05,652 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined) | |
| == 2020-10-18 13:45:05,652 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined) | |
| == 2020-10-18 13:45:05,652 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS_MT to libfftw3.a,libpthread.a | |
| == 2020-10-18 13:45:05,652 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2020-10-18 13:45:05,653 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2020-10-18 13:45:05,653 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable FFT_INC_DIR to /opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/include | |
| == 2020-10-18 13:45:05,653 environment.py:97 INFO Environment variable FFT_INC_DIR set to /opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/include (previously undefined) | |
| == 2020-10-18 13:45:05,653 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/include (previously undefined) | |
| == 2020-10-18 13:45:05,653 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable FFT_LIB_DIR to /opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/lib | |
| == 2020-10-18 13:45:05,654 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/lib (previously undefined) | |
| == 2020-10-18 13:45:05,654 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/lib (previously undefined) | |
| == 2020-10-18 13:45:05,654 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS to libfftw3_mpi.a,libfftw3.a | |
| == 2020-10-18 13:45:05,654 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined) | |
| == 2020-10-18 13:45:05,654 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined) | |
| == 2020-10-18 13:45:05,655 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS_MT to libfftw3.a,libpthread.a | |
| == 2020-10-18 13:45:05,655 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2020-10-18 13:45:05,655 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2020-10-18 13:45:05,655 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable FLIBS to -lgfortran | |
| == 2020-10-18 13:45:05,655 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined) | |
| == 2020-10-18 13:45:05,656 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) | |
| == 2020-10-18 13:45:05,656 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable LAPACK_INC_DIR to /opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include | |
| == 2020-10-18 13:45:05,656 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include (previously undefined) | |
| == 2020-10-18 13:45:05,656 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include (previously undefined) | |
| == 2020-10-18 13:45:05,657 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable LAPACK_LIB_DIR to /opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib | |
| == 2020-10-18 13:45:05,657 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib (previously undefined) | |
| == 2020-10-18 13:45:05,657 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib (previously undefined) | |
| == 2020-10-18 13:45:05,657 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable LAPACK_MT_STATIC_LIBS to libopenblas.a,libgfortran.a | |
| == 2020-10-18 13:45:05,657 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2020-10-18 13:45:05,658 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2020-10-18 13:45:05,658 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable LAPACK_STATIC_LIBS to libopenblas.a,libgfortran.a | |
| == 2020-10-18 13:45:05,658 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2020-10-18 13:45:05,658 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2020-10-18 13:45:05,658 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable LDFLAGS to -L/opt/apps/centos7/naples/software/netCDF-Fortran/4.4.4-foss-2017b/lib64 -L/opt/apps/centos7/naples/software/netCDF-Fortran/4.4.4-foss-2017b/lib -L/opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/lib -L/opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib -L/opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib -L/opt/apps/centos7/naples/software/Core/GCCcore/6.4.0/lib64 -L/opt/apps/centos7/naples/software/Core/GCCcore/6.4.0/lib | |
| == 2020-10-18 13:45:05,659 environment.py:97 INFO Environment variable LDFLAGS set to -L/opt/apps/centos7/naples/software/netCDF-Fortran/4.4.4-foss-2017b/lib64 -L/opt/apps/centos7/naples/software/netCDF-Fortran/4.4.4-foss-2017b/lib -L/opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/lib -L/opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib -L/opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib -L/opt/apps/centos7/naples/software/Core/GCCcore/6.4.0/lib64 -L/opt/apps/centos7/naples/software/Core/GCCcore/6.4.0/lib (previously undefined) | |
| == 2020-10-18 13:45:05,659 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/opt/apps/centos7/naples/software/netCDF-Fortran/4.4.4-foss-2017b/lib64 -L/opt/apps/centos7/naples/software/netCDF-Fortran/4.4.4-foss-2017b/lib -L/opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/lib -L/opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib -L/opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib -L/opt/apps/centos7/naples/software/Core/GCCcore/6.4.0/lib64 -L/opt/apps/centos7/naples/software/Core/GCCcore/6.4.0/lib (previously undefined) | |
| == 2020-10-18 13:45:05,659 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable LIBBLAS to -lopenblas -lgfortran | |
| == 2020-10-18 13:45:05,659 environment.py:97 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-18 13:45:05,659 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-18 13:45:05,660 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable LIBBLAS_MT to -lopenblas -lgfortran | |
| == 2020-10-18 13:45:05,660 environment.py:97 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-18 13:45:05,660 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-18 13:45:05,660 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable LIBFFT to -lfftw3_mpi -lfftw3 | |
| == 2020-10-18 13:45:05,660 environment.py:97 INFO Environment variable LIBFFT set to -lfftw3_mpi -lfftw3 (previously undefined) | |
| == 2020-10-18 13:45:05,661 environment.py:97 INFO Environment variable EBVARLIBFFT set to -lfftw3_mpi -lfftw3 (previously undefined) | |
| == 2020-10-18 13:45:05,661 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable LIBFFT_MT to -lfftw3 -lpthread | |
| == 2020-10-18 13:45:05,661 environment.py:97 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) | |
| == 2020-10-18 13:45:05,661 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) | |
| == 2020-10-18 13:45:05,661 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable LIBLAPACK to -lopenblas -lgfortran | |
| == 2020-10-18 13:45:05,661 environment.py:97 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-18 13:45:05,662 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-18 13:45:05,662 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT to -lopenblas -lgfortran | |
| == 2020-10-18 13:45:05,662 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-18 13:45:05,662 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-18 13:45:05,662 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT_ONLY to -lopenblas -lgfortran | |
| == 2020-10-18 13:45:05,663 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-18 13:45:05,663 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-18 13:45:05,663 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable LIBLAPACK_ONLY to -lopenblas -lgfortran | |
| == 2020-10-18 13:45:05,663 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-18 13:45:05,663 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-18 13:45:05,663 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable LIBS to -lm -lpthread | |
| == 2020-10-18 13:45:05,664 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) | |
| == 2020-10-18 13:45:05,664 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) | |
| == 2020-10-18 13:45:05,664 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK to -lscalapack -lopenblas -lgfortran | |
| == 2020-10-18 13:45:05,664 environment.py:97 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-18 13:45:05,664 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-18 13:45:05,664 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT to -lscalapack -lopenblas -lpthread -lgfortran | |
| == 2020-10-18 13:45:05,665 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined) | |
| == 2020-10-18 13:45:05,665 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined) | |
| == 2020-10-18 13:45:05,665 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT_ONLY to -lscalapack -lgfortran | |
| == 2020-10-18 13:45:05,665 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2020-10-18 13:45:05,665 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2020-10-18 13:45:05,666 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_ONLY to -lscalapack -lgfortran | |
| == 2020-10-18 13:45:05,666 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2020-10-18 13:45:05,666 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2020-10-18 13:45:05,666 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable MPICC to mpicc | |
| == 2020-10-18 13:45:05,666 environment.py:97 INFO Environment variable MPICC set to mpicc (previously undefined) | |
| == 2020-10-18 13:45:05,667 environment.py:97 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) | |
| == 2020-10-18 13:45:05,667 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable MPICXX to mpicxx | |
| == 2020-10-18 13:45:05,667 environment.py:97 INFO Environment variable MPICXX set to mpicxx (previously undefined) | |
| == 2020-10-18 13:45:05,667 environment.py:97 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) | |
| == 2020-10-18 13:45:05,667 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable MPIF77 to mpifort | |
| == 2020-10-18 13:45:05,667 environment.py:97 INFO Environment variable MPIF77 set to mpifort (previously undefined) | |
| == 2020-10-18 13:45:05,668 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) | |
| == 2020-10-18 13:45:05,668 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable MPIF90 to mpifort | |
| == 2020-10-18 13:45:05,668 environment.py:97 INFO Environment variable MPIF90 set to mpifort (previously undefined) | |
| == 2020-10-18 13:45:05,668 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) | |
| == 2020-10-18 13:45:05,668 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable MPIFC to mpifort | |
| == 2020-10-18 13:45:05,669 environment.py:97 INFO Environment variable MPIFC set to mpifort (previously undefined) | |
| == 2020-10-18 13:45:05,669 environment.py:97 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) | |
| == 2020-10-18 13:45:05,669 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable MPI_INC_DIR to /opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.1/include | |
| == 2020-10-18 13:45:05,669 environment.py:97 INFO Environment variable MPI_INC_DIR set to /opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.1/include (previously undefined) | |
| == 2020-10-18 13:45:05,669 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.1/include (previously undefined) | |
| == 2020-10-18 13:45:05,669 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable MPI_LIB_DIR to /opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.1/lib | |
| == 2020-10-18 13:45:05,670 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.1/lib (previously undefined) | |
| == 2020-10-18 13:45:05,670 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.1/lib (previously undefined) | |
| == 2020-10-18 13:45:05,670 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable MPI_LIB_SHARED to /opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.1/lib/libmpi.so | |
| == 2020-10-18 13:45:05,670 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.1/lib/libmpi.so (previously undefined) | |
| == 2020-10-18 13:45:05,670 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.1/lib/libmpi.so (previously undefined) | |
| == 2020-10-18 13:45:05,671 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable MPI_LIB_STATIC to | |
| == 2020-10-18 13:45:05,671 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) | |
| == 2020-10-18 13:45:05,671 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) | |
| == 2020-10-18 13:45:05,671 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable OMPI_CC to gcc | |
| == 2020-10-18 13:45:05,671 environment.py:97 INFO Environment variable OMPI_CC set to gcc (previously undefined) | |
| == 2020-10-18 13:45:05,671 environment.py:97 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) | |
| == 2020-10-18 13:45:05,672 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable OMPI_CXX to g++ | |
| == 2020-10-18 13:45:05,672 environment.py:97 INFO Environment variable OMPI_CXX set to g++ (previously undefined) | |
| == 2020-10-18 13:45:05,672 environment.py:97 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) | |
| == 2020-10-18 13:45:05,672 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable OMPI_F77 to gfortran | |
| == 2020-10-18 13:45:05,672 environment.py:97 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) | |
| == 2020-10-18 13:45:05,673 environment.py:97 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) | |
| == 2020-10-18 13:45:05,673 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable OMPI_F90 to gfortran | |
| == 2020-10-18 13:45:05,673 environment.py:97 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) | |
| == 2020-10-18 13:45:05,673 environment.py:97 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) | |
| == 2020-10-18 13:45:05,673 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable OMPI_FC to gfortran | |
| == 2020-10-18 13:45:05,673 environment.py:97 INFO Environment variable OMPI_FC set to gfortran (previously undefined) | |
| == 2020-10-18 13:45:05,674 environment.py:97 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) | |
| == 2020-10-18 13:45:05,674 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable OPTFLAGS to -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g | |
| == 2020-10-18 13:45:05,674 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g (previously undefined) | |
| == 2020-10-18 13:45:05,674 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g (previously undefined) | |
| == 2020-10-18 13:45:05,674 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable PRECFLAGS to -fno-math-errno | |
| == 2020-10-18 13:45:05,675 environment.py:97 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2020-10-18 13:45:05,675 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2020-10-18 13:45:05,675 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable SCALAPACK_INC_DIR to /opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/include | |
| == 2020-10-18 13:45:05,675 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/include (previously undefined) | |
| == 2020-10-18 13:45:05,675 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/include (previously undefined) | |
| == 2020-10-18 13:45:05,675 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable SCALAPACK_LIB_DIR to /opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib | |
| == 2020-10-18 13:45:05,676 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib (previously undefined) | |
| == 2020-10-18 13:45:05,676 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib (previously undefined) | |
| == 2020-10-18 13:45:05,676 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable SCALAPACK_MT_STATIC_LIBS to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a | |
| == 2020-10-18 13:45:05,676 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2020-10-18 13:45:05,676 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2020-10-18 13:45:05,677 toolchain.py:1111 DEBUG _setenv_variables: setting environment variable SCALAPACK_STATIC_LIBS to libscalapack.a,libopenblas.a,libgfortran.a | |
| == 2020-10-18 13:45:05,677 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined) | |
| == 2020-10-18 13:45:05,677 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined) | |
| == 2020-10-18 13:45:05,677 toolchain.py:434 DEBUG get_software_version software version 2.1.1 for OpenMPI was found in environment | |
| == 2020-10-18 13:45:05,678 easyblock.py:1610 INFO Using /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/ as start dir | |
| == 2020-10-18 13:45:05,678 easyblock.py:1613 DEBUG Changed to real build directory /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/ (start_dir) | |
| == 2020-10-18 13:45:05,678 easyblock.py:3025 DEBUG Not skipping configure step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2020-10-18 13:45:05,678 build_log.py:265 INFO configuring... | |
| == 2020-10-18 13:45:05,679 easyblock.py:3033 INFO Starting configure step | |
| == 2020-10-18 13:45:05,679 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-18 13:45:05,679 templates.py:164 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2b6f4a03df10> | |
| == 2020-10-18 13:45:05,679 templates.py:191 DEBUG version found in easyconfig is 4.0 | |
| == 2020-10-18 13:45:05,680 templates.py:276 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2020-10-18 13:45:05,680 templates.py:276 DEBUG name: github_account, config: %(namelower)s | |
| == 2020-10-18 13:45:05,680 templates.py:276 DEBUG name: name, config: Siesta | |
| == 2020-10-18 13:45:05,680 templates.py:276 DEBUG name: parallel, config: 64 | |
| == 2020-10-18 13:45:05,680 templates.py:276 DEBUG name: version, config: 4.0 | |
| == 2020-10-18 13:45:05,680 templates.py:276 DEBUG name: versionsuffix, config: | |
| == 2020-10-18 13:45:05,681 templates.py:276 DEBUG name: versionprefix, config: | |
| == 2020-10-18 13:45:05,681 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-18 13:45:05,681 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1}) | |
| == 2020-10-18 13:45:05,681 easyconfig.py:1619 INFO Template values: arch='x86_64', bitbucket_account='siesta', builddir='/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b', github_account='siesta', installdir='/opt/apps/centos7/naples/software/Siesta/4.0-foss-2017b', mpi_cmd_prefix='mpirun -n 1', name='Siesta', nameletter='S', nameletterlower='s', namelower='siesta', parallel='64', toolchain_name='foss', toolchain_version='2017b', version='4.0', version_major='4', version_major_minor='4.0', version_minor='0', versionprefix='', versionsuffix='' | |
| == 2020-10-18 13:45:05,682 hooks.py:167 INFO Found pre_configure_hook hook | |
| == 2020-10-18 13:45:05,682 hooks.py:199 INFO Running 'pre_configure_hook' hook function (arguments: [<easybuild.easyblocks.siesta.EB_Siesta object at 0x2b6f4a72fed0>])... | |
| == 2020-10-18 13:45:05,682 easyblock.py:3039 INFO Running method configure_step part of step configure | |
| == 2020-10-18 13:45:05,682 filetools.py:1513 INFO Creating directory /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/bin (parents: False, set_gid: False, sticky: False) | |
| == 2020-10-18 13:45:05,683 run.py:162 DEBUG run_cmd: Output of "/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/obj_setup.sh" will be logged to /dev/shm/tmp/eb-koyRFg/easybuild-run_cmd-9oF2DI.log | |
| == 2020-10-18 13:45:05,683 run.py:203 DEBUG run_cmd: running cmd /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/obj_setup.sh (in /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj) | |
| == 2020-10-18 13:45:05,683 run.py:222 INFO running cmd: /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/obj_setup.sh | |
| == 2020-10-18 13:45:05,904 run.py:538 INFO cmd "/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/obj_setup.sh" exited with exit code 0 and output: | |
| *** Compilation setup done. | |
| *** Remember to copy an arch.make file or run configure as: | |
| /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/configure [configure_options] | |
| == 2020-10-18 13:45:05,904 run.py:574 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
| == 2020-10-18 13:45:05,906 filetools.py:955 DEBUG Using blocksize 16777216 for calculating the checksum | |
| == 2020-10-18 13:45:05,906 configuremake.py:93 INFO config.guess version: 2018-08-29 (last updated: 2020-10-06T11:58:48.489060, SHA256 checksum: c02eb9cc55c86cfd1e9a794e548d25db5c9539e7b2154beb649bc6e2cbffc74c) | |
| == 2020-10-18 13:45:05,907 run.py:203 DEBUG run_cmd: running cmd /opt/apps/sources/generic/eb_v4.3.1.dev0/ConfigureMake/config.guess (in /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj) | |
| == 2020-10-18 13:45:05,907 run.py:222 INFO running cmd: /opt/apps/sources/generic/eb_v4.3.1.dev0/ConfigureMake/config.guess | |
| == 2020-10-18 13:45:06,020 run.py:538 INFO cmd "/opt/apps/sources/generic/eb_v4.3.1.dev0/ConfigureMake/config.guess" exited with exit code 0 and output: | |
| x86_64-pc-linux-gnu | |
| == 2020-10-18 13:45:06,020 run.py:574 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
| == 2020-10-18 13:45:06,021 configuremake.py:243 INFO /opt/apps/sources/generic/eb_v4.3.1.dev0/ConfigureMake/config.guess returned a system type 'x86_64-pc-linux-gnu' | |
| == 2020-10-18 13:45:06,021 configuremake.py:247 INFO Providing 'x86_64-pc-linux-gnu' as value to --build option of configure script | |
| == 2020-10-18 13:45:06,021 configuremake.py:251 INFO Providing 'x86_64-pc-linux-gnu' as value to --host option of configure script | |
| == 2020-10-18 13:45:06,022 run.py:203 DEBUG run_cmd: running cmd ../Src/./configure --prefix=/opt/apps/centos7/naples/software/Siesta/4.0-foss-2017b --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --enable-mpi --with-blas="-lopenblas -lgfortran" --with-lapack="-lopenblas -lgfortran" --with-scalapack="-lscalapack -lopenblas -lgfortran" --with-blacs="-lscalapack -lopenblas -lgfortran" --with-netcdf=-lnetcdff (in /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj) | |
| == 2020-10-18 13:45:06,022 run.py:222 INFO running cmd: ../Src/./configure --prefix=/opt/apps/centos7/naples/software/Siesta/4.0-foss-2017b --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --enable-mpi --with-blas="-lopenblas -lgfortran" --with-lapack="-lopenblas -lgfortran" --with-scalapack="-lscalapack -lopenblas -lgfortran" --with-blacs="-lscalapack -lopenblas -lgfortran" --with-netcdf=-lnetcdff | |
| == 2020-10-18 13:45:12,334 run.py:538 INFO cmd " ../Src/./configure --prefix=/opt/apps/centos7/naples/software/Siesta/4.0-foss-2017b --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --enable-mpi --with-blas="-lopenblas -lgfortran" --with-lapack="-lopenblas -lgfortran" --with-scalapack="-lscalapack -lopenblas -lgfortran" --with-blacs="-lscalapack -lopenblas -lgfortran" --with-netcdf=-lnetcdff " exited with exit code 0 and output: | |
| checking build system type... x86_64-pc-linux-gnu | |
| checking host system type... x86_64-pc-linux-gnu | |
| checking for x86_64-pc-linux-gnu-xlf95... mpifort | |
| checking for Fortran compiler default output file name... a.out | |
| checking whether the Fortran compiler works... yes | |
| checking whether we are cross compiling... no | |
| checking for suffix of executables... | |
| checking for suffix of object files... o | |
| checking whether we are using the GNU Fortran compiler... yes | |
| checking whether mpifort accepts -g... yes | |
| checking for Fortran flag needed to allow fixed-form source for .f suffix... none | |
| checking for Fortran flag needed to allow free-form source for .f90 suffix... none | |
| checking for x86_64-pc-linux-gnu-gcc... mpicc | |
| checking whether we are using the GNU C compiler... yes | |
| checking whether mpicc accepts -g... yes | |
| checking for mpicc option to accept ANSI C... none needed | |
| configure: WARNING: Use AC_PROG_FC with AC_PROG_FPP, instead of AC_PROG_F77 | |
| checking for fixed form Fortran preprocessor features... done. | |
| checking whether mpifort compiles programs with cpp directives... yes | |
| checking whether mpifort accepts -D... yes | |
| checking whether mpifort accepts -I... yes | |
| checking whether mpifort fulfils requested features... yes | |
| checking preprocessing mode we may therefore use... direct | |
| checking for Fortran flag needed to allow preprocessed fixed-form source for .F suffix... (cached) none | |
| checking for Fortran flag needed to allow free-form source for .F90 suffix... none | |
| checking for x86_64-pc-linux-gnu-ranlib... no | |
| checking for ranlib... ranlib | |
| configure: Could not determine type of compiler | |
| checking for mpifc... mpifort | |
| checking for MPI_Init... no | |
| checking for MPI_Init in -lmpi... yes | |
| checking for kind number produced by kind(1.0)... checking for kind number produced by kind(1.0)... 4 | |
| checking for kind number produced by kind(1.0d0)... checking for kind number produced by kind(1.0d0)... 8 | |
| checking for kind number produced by selected_real_kind(6,34)... checking for kind number produced by selected_real_kind(6,34)... 4 | |
| checking for kind number produced by selected_real_kind(15,300)... checking for kind number produced by selected_real_kind(15,300)... 8 | |
| checking how to compile a call to FLUSH... default | |
| checking how to compile a call to ABORT... default | |
| checking how to compile DIMAG... default | |
| checking for netcdf... yes | |
| checking for sgemm in -lopenblas -lgfortran... yes | |
| checking for dsygv in -lopenblas -lgfortran... yes | |
| checking LAPACK includes divide-and-conquer routines... yes | |
| configure: using DC_LAPACK routines packaged with SIESTA due to bug in library. Linker flag might be needed to avoid duplicate symbols | |
| checking if we can compile a BLACS program... yes | |
| checking if we can compile a ScaLAPACK program... yes | |
| checking if ScaLAPACK version is sufficiently recent... yes | |
| configure: creating ./config.status | |
| config.status: creating arch.make | |
| == 2020-10-18 13:45:12,335 run.py:574 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
| == 2020-10-18 13:45:12,336 filetools.py:1297 INFO Applying following regex substitutions to /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/arch.make: [('dc_lapack.a', ''), ('^NETCDF_INTERFACE\\s*=.*$', ''), ('libsiestaBLAS.a', ''), ('libsiestaLAPACK.a', ''), ('^(LDFLAGS\\s*=).*$', '\\1 -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -L/opt/apps/centos7/naples/software/netCDF-Fortran/4.4.4-foss-2017b/lib64 -L/opt/apps/centos7/naples/software/netCDF-Fortran/4.4.4-foss-2017b/lib -L/opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/lib -L/opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib -L/opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib -L/opt/apps/centos7/naples/software/Core/GCCcore/6.4.0/lib64 -L/opt/apps/centos7/naples/software/Core/GCCcore/6.4.0/lib')] | |
| == 2020-10-18 13:45:12,342 filetools.py:1326 INFO Replacing line 26 in /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/arch.make: 'LDFLAGS=-L/opt/apps/centos7/naples/software/netCDF-Fortran/4.4.4-foss-2017b/lib64 -L/opt/apps/centos7/naples/software/netCDF-Fortran/4.4.4-foss-2017b/lib -L/opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/lib -L/opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib -L/opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib -L/opt/apps/centos7/naples/software/Core/GCCcore/6.4.0/lib64 -L/opt/apps/centos7/naples/software/Core/GCCcore/6.4.0/lib' -> '\1 -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -L/opt/apps/centos7/naples/software/netCDF-Fortran/4.4.4-foss-2017b/lib64 -L/opt/apps/centos7/naples/software/netCDF-Fortran/4.4.4-foss-2017b/lib -L/opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/lib -L/opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib -L/opt/apps/centos7/naples/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib -L/opt/apps/centos7/naples/software/Core/GCCcore/6.4.0/lib64 -L/opt/apps/centos7/naples/software/Core/GCCcore/6.4.0/lib' | |
| == 2020-10-18 13:45:12,342 filetools.py:1326 INFO Replacing line 40 in /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/arch.make: 'dc_lapack.a' -> '' | |
| == 2020-10-18 13:45:12,343 filetools.py:1326 INFO Replacing line 43 in /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/arch.make: 'NETCDF_INTERFACE=libnetcdf_f90.a' -> '' | |
| == 2020-10-18 13:45:12,344 filetools.py:1297 INFO Applying following regex substitutions to /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/arch.make: [('^(ARFLAGS_EXTRA\\s*=.*)$', '\\1\\nNETCDF_INCFLAGS = -I/opt/apps/centos7/naples/software/netCDF-Fortran/4.4.4-foss-2017b/include')] | |
| == 2020-10-18 13:45:12,346 filetools.py:1326 INFO Replacing line 28 in /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/arch.make: 'ARFLAGS_EXTRA=' -> '\1\nNETCDF_INCFLAGS = -I/opt/apps/centos7/naples/software/netCDF-Fortran/4.4.4-foss-2017b/include' | |
| == 2020-10-18 13:45:12,347 filetools.py:1297 INFO Applying following regex substitutions to /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/arch.make: [('(FPPFLAGS\\s*:?=.*)$', '\\1\\nFFTW_INCFLAGS = -I/opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/include\\nFFTW_LIBS = -L/opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/lib -lfftw3_mpi -lfftw3')] | |
| == 2020-10-18 13:45:12,350 filetools.py:1326 INFO Replacing line 25 in /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/arch.make: 'FPPFLAGS= -DMPI -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DCDF' -> '\1\nFFTW_INCFLAGS = -I/opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/include\nFFTW_LIBS = -L/opt/apps/centos7/naples/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.1/FFTW/3.3.6/lib -lfftw3_mpi -lfftw3' | |
| == 2020-10-18 13:45:12,351 run.py:162 DEBUG run_cmd: Output of "make " will be logged to /dev/shm/tmp/eb-koyRFg/easybuild-run_cmd-sCa0FM.log | |
| == 2020-10-18 13:45:12,352 run.py:203 DEBUG run_cmd: running cmd make (in /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj) | |
| == 2020-10-18 13:45:12,352 run.py:222 INFO running cmd: make | |
| == 2020-10-18 13:45:35,711 build_log.py:169 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:124 in __init__): cmd "make " exited with exit code 2 and output: | |
| Compilation architecture to be used: x86_64-pc-linux-gnu--unknown | |
| If this is not what you want, create the right | |
| arch.make file using the models in Src/Sys | |
| Hit ^C to abort... | |
| (cd FoX; touch arch.make ; \ | |
| CONFIGURE="/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/configure"; \ | |
| $CONFIGURE VPATH="/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX" \ | |
| FC="mpifort" FCFLAGS="-O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno" \ | |
| --enable-wcml || false ) | |
| checking build system type... x86_64-unknown-linux-gnu | |
| checking host system type... x86_64-unknown-linux-gnu | |
| checking for linker flag to name executables... -o | |
| checking for Fortran compiler default output file name... conftest | |
| checking whether the Fortran compiler works... yes | |
| checking whether we are cross compiling... no | |
| checking for suffix of executables... | |
| checking for suffix of object files... o | |
| checking whether we are using the GNU Fortran compiler... yes | |
| checking whether mpifort accepts -g... yes | |
| checking for Fortran flag needed to allow free-form source for .f90 suffix... none | |
| checking for gcc... mpicc | |
| checking whether we are using the GNU C compiler... yes | |
| checking whether mpicc accepts -g... yes | |
| checking for mpicc option to accept ISO C89... none needed | |
| configure: WARNING: Use AC_PROG_FC with AC_PROG_FPP, instead of AC_PROG_F77 | |
| checking for fixed form Fortran preprocessor features... done. | |
| checking whether mpifort compiles programs with cpp directives... yes | |
| checking whether mpifort accepts -D... yes | |
| checking whether mpifort accepts -I... yes | |
| checking whether mpifort fulfils requested features... yes | |
| checking preprocessing mode we may therefore use... direct | |
| checking for Fortran flag needed to allow free-form preprocessed source for .F90 suffix... none | |
| checking for ranlib... ranlib | |
| configure: Could not determine type of compiler | |
| checking for kind number produced by kind(1.0)... 4 | |
| checking for kind number produced by kind(1.0d0)... 8 | |
| checking for kind number produced by selected_real_kind(6,34)... 4 | |
| checking for kind number produced by selected_real_kind(15,300)... 8 | |
| checking how to compile a call to FLUSH... default | |
| checking how to compile a call to ABORT... default | |
| checking for EOR character used by mpifort... LF | |
| checking for ASSOCIATED in restricted expression bug... no | |
| checking for a BSD-compatible install... /bin/install -c | |
| checking for a thread-safe mkdir -p... /bin/mkdir -p | |
| checking for flag to alter module search path... -I | |
| checking for suffix of module files... mod | |
| checking whether module filenames are uppercased... no | |
| configure: creating ./config.status | |
| config.status: creating arch.make | |
| config.status: creating FoX-config | |
| (cd FoX; make ) | |
| make[1]: Entering directory `/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/FoX' | |
| mkdir -p objs/lib objs/finclude | |
| (cd fsys; make VPATH=/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/fsys) | |
| make[2]: Entering directory `/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/FoX/fsys' | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/fsys/fox_m_fsys_abort_flush.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/fsys/fox_m_fsys_array_str.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/fsys/fox_m_fsys_realtypes.f90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/fsys/fox_m_fsys_format.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/fsys/fox_m_fsys_parse_input.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/fsys/fox_m_fsys_string.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/fsys/fox_m_fsys_string_list.F90 | |
| ==> Creating libFoX_fsys.a with fox_m_fsys_abort_flush.o fox_m_fsys_array_str.o fox_m_fsys_format.o fox_m_fsys_parse_input.o fox_m_fsys_string.o fox_m_fsys_string_list.o fox_m_fsys_realtypes.o | |
| cp -p libFoX_fsys.a /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/FoX/objs/lib | |
| for i in *.mod; do \ | |
| cp -p $i /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/FoX/objs/finclude; done | |
| make[2]: Leaving directory `/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/FoX/fsys' | |
| (cd utils; make VPATH=/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/utils) | |
| make[2]: Entering directory `/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/FoX/utils' | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/utils/fox_m_utils_mtprng.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/utils/fox_m_utils_uuid.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/utils/fox_m_utils_uri.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/utils/FoX_utils.f90 | |
| ==> Creating libFoX_utils.a with FoX_utils.o fox_m_utils_mtprng.o fox_m_utils_uuid.o fox_m_utils_uri.o | |
| cp -p libFoX_utils.a /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/FoX/objs/lib | |
| for i in *.mod; do \ | |
| cp -p $i /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/FoX/objs/finclude; done | |
| make[2]: Leaving directory `/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/FoX/utils' | |
| (cd common; make VPATH=/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/common) | |
| make[2]: Entering directory `/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/FoX/common' | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/common/m_common_charset.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/common/m_common_content_model.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/common/m_common_error.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/common/m_common_namecheck.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/common/m_common_element.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/common/m_common_attrs.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/common/m_common_buffer.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/common/m_common_entities.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/common/m_common_notations.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/common/m_common_struct.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/common/m_common_namespaces.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/common/m_common_elstack.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/common/m_common_io.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/common/FoX_common.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/common/m_common_entity_expand.F90 | |
| ==> Creating libFoX_common.a with m_common_attrs.o m_common_buffer.o m_common_charset.o m_common_namespaces.o m_common_error.o m_common_elstack.o m_common_io.o FoX_common.o m_common_namecheck.o m_common_entities.o m_common_notations.o m_common_element.o m_common_struct.o m_common_entity_expand.o m_common_content_model.o | |
| cp -p libFoX_common.a /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/FoX/objs/lib | |
| for i in *.mod; do \ | |
| cp -p $i /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/FoX/objs/finclude; done | |
| make[2]: Leaving directory `/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/FoX/common' | |
| (cd wxml; make VPATH=/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/wxml) | |
| make[2]: Entering directory `/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/FoX/wxml' | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/wxml/m_wxml_escape.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/wxml/m_wxml_core.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/wxml/m_wxml_overloads.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/wxml/FoX_wxml.f90 | |
| ==> Creating libFoX_wxml.a with m_wxml_escape.o m_wxml_core.o m_wxml_overloads.o FoX_wxml.o | |
| ar cru libFoX_wxml.a m_wxml_escape.o m_wxml_core.o m_wxml_overloads.o FoX_wxml.o | |
| ranlib libFoX_wxml.a | |
| cp -p libFoX_wxml.a /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/FoX/objs/lib | |
| for i in *.mod; do \ | |
| cp -p $i /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/FoX/objs/finclude; done | |
| make[2]: Leaving directory `/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/FoX/wxml' | |
| (cd wcml; make VPATH=/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/wcml) | |
| make[2]: Entering directory `/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/FoX/wcml' | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/wcml/m_wcml_stml.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/wcml/m_wcml_coma.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/wcml/m_wcml_metadata.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/wcml/m_wcml_core.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/wcml/m_wcml_geometry.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/wcml/m_wcml_lattice.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/wcml/m_wcml_lists.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/wcml/m_wcml_molecule.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/wcml/m_wcml_parameter.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_EOR_LF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/wcml/m_wcml_property.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I../objs/finclude /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/wcml/FoX_wcml.f90 | |
| ==> Creating libFoX_wcml.a with FoX_wcml.o m_wcml_coma.o m_wcml_core.o m_wcml_stml.o m_wcml_parameter.o m_wcml_property.o m_wcml_metadata.o m_wcml_lattice.o m_wcml_geometry.o m_wcml_molecule.o m_wcml_lists.o | |
| cp -p libFoX_wcml.a /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/FoX/objs/lib ; | |
| for i in *.mod ; do \ | |
| cp -p $i /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/FoX/objs/finclude; done | |
| make[2]: Leaving directory `/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/FoX/wcml' | |
| if test -d examples; then (cd examples; make VPATH=/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/FoX/examples) fi | |
| make[1]: Leaving directory `/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/FoX' | |
| ==> Incorporating information about present compilation (compiler and flags) | |
| make[1]: Entering directory `/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj' | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I/opt/apps/centos7/naples/software/netCDF-Fortran/4.4.4-foss-2017b/include `FoX/FoX-config --fcflags` -I/opt/apps/centos7/naples/software/netCDF-Fortran/4.4.4-foss-2017b/include -DMPI -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DCDF compinfo.F90 | |
| make[1]: Leaving directory `/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj' | |
| make[1]: Entering directory `/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/MPI' | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I. /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/MPI/mpi__include.f90 | |
| if [ -z "4 8" ] ; then make kind_explorer ; fi | |
| The kind numbers for single and double precision reals follow | |
| sh /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/MPI/generate.sh "4 8" | |
| ===> Generating module files from templates... | |
| 4 8 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I. -DMPI -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DCDF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/MPI/timer_mpi.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I. Interfaces.f90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I. -DMPI -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DCDF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/MPI/mpi.F | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I. /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/MPI/mpi_siesta.f90 | |
| ranlib libmpi_f90.a | |
| make[1]: Leaving directory `/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/MPI' | |
| (cd fdf ; make "VPATH=/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/fdf" \ | |
| "FPPFLAGS=-DMPI -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DCDF" \ | |
| "FFLAGS=-O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno" module ) | |
| make[1]: Entering directory `/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/fdf' | |
| In fdf, INCFLAGS is: -I/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/fdf -I../ | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/fdf -I../ -DMPI -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DCDF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/fdf/iso_fortran_env.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/fdf -I../ -DMPI -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DCDF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/fdf/prec.F90 | |
| mpifort -c -O2 -ftree-vectorize -march=znver1 -mavx2 -mfma -g -fno-math-errno -I/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/fdf -I../ -DMPI -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DCDF /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/fdf/utils.F90 | |
| /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/fdf/utils.F90:248:132: | |
| __FILE__, __LINE__, ERROR_UNIT) | |
| 1 | |
| Error: Line truncated at (1) [-Werror=line-truncation] | |
| /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/fdf/utils.F90:248:18: | |
| __FILE__, __LINE__, ERROR_UNIT) | |
| 1 | |
| Error: Unterminated character constant beginning at (1) | |
| /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/fdf/utils.F90:273:132: | |
| __FILE__, __LINE__, ERROR_UNIT) | |
| 1 | |
| Error: Line truncated at (1) [-Werror=line-truncation] | |
| /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/fdf/utils.F90:273:18: | |
| __FILE__, __LINE__, ERROR_UNIT) | |
| 1 | |
| Error: Unterminated character constant beginning at (1) | |
| /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/fdf/utils.F90:377:132: | |
| __FILE__, __LINE__, ERROR_UNIT) | |
| 1 | |
| Error: Line truncated at (1) [-Werror=line-truncation] | |
| /dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Src/fdf/utils.F90:377:18: | |
| __FILE__, __LINE__, ERROR_UNIT) | |
| 1 | |
| Error: Unterminated character constant beginning at (1) | |
| f951: some warnings being treated as errors | |
| make[1]: *** [utils.o] Error 1 | |
| make[1]: Leaving directory `/dev/shm/averyveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryverylongbuildpath/Siesta/4.0/foss-2017b/siesta-4.0/Obj/fdf' | |
| make: *** [libfdf.a] Error 2 | |
| (at easybuild/tools/run.py:533 in parse_cmd_output) | |
| == 2020-10-18 13:45:35,712 config.py:577 DEBUG software install path as specified by 'installpath' and 'subdir_software': /opt/apps/centos7/naples/software | |
| == 2020-10-18 13:45:35,712 filetools.py:1623 INFO Removing lock /opt/apps/centos7/naples/software/.locks/_opt_apps_centos7_naples_software_Siesta_4.0-foss-2017b.lock... | |
| == 2020-10-18 13:45:35,712 filetools.py:330 INFO Path /opt/apps/centos7/naples/software/.locks/_opt_apps_centos7_naples_software_Siesta_4.0-foss-2017b.lock successfully removed. | |
| == 2020-10-18 13:45:35,713 filetools.py:1627 INFO Lock removed: /opt/apps/centos7/naples/software/.locks/_opt_apps_centos7_naples_software_Siesta_4.0-foss-2017b.lock | |
| == 2020-10-18 13:45:35,713 easyblock.py:3311 WARNING build failed (first 300 chars): cmd "make " exited with exit code 2 and output: | |
| Compilation architecture to be used: x86_64-pc-linux-gnu--unknown | |
| If this is not what you want, create the right | |
| arch.make file using the models in Src/Sys | |
| Hit ^C to abort... | |
| (cd FoX; touch arch.make ; \ | |
| CONFIGURE="/dev/shm/averyveryveryvery | |
| == 2020-10-18 13:45:35,713 easyblock.py:295 INFO Closing log for application name Siesta version 4.0 |
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