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verdurin/AmberTools-17-foss-2018a_partial.log

Created March 16, 2018 12:55
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(partial) EasyBuild log for failed build of /tmp/eb-vHXp9t/files_pr6028/a/AmberTools/AmberTools-17-foss-2018a.eb (PR #6028)
Raw
AmberTools-17-foss-2018a_partial.log
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os.environ["_ModuleTable006_"] = "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";
os.environ["_ModuleTable007_"] = "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";
os.environ["_ModuleTable008_"] = "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";
os.environ["_ModuleTable009_"] = "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";
os.environ["_ModuleTable010_"] = "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";
os.environ["_ModuleTable011_"] = "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";
os.environ["_ModuleTable012_"] = "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";
os.environ["_ModuleTable013_"] = "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";
os.environ["_ModuleTable014_"] = "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";
os.environ["_ModuleTable015_"] = "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";
os.environ["_ModuleTable016_"] = "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";
os.environ["_ModuleTable017_"] = "c2hhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2V0Yy9tb2R1bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXg6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9Db3JlOi91c3Ivc2hhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLFsidmVyc2lvbiJdPTIsfQ==";
os.environ["_ModuleTable_Sz_"] = "17";
; stderr:
== 2018-03-16 12:55:42,343 modules.py:1129 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python load pkg-config/0.29.2-GCCcore-6.4.0' ran fine
== 2018-03-16 12:55:42,344 modules.py:707 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/home/centos/.local/easybuild/software/netCDF-Fortran/4.4.4-foss-2018a/lib', '/home/centos/.local/easybuild/software/netCDF/4.6.0-foss-2018a/lib64', '/home/centos/.local/easybuild/software/cURL/7.58.0-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/HDF5/1.10.1-foss-2018a/lib', '/home/centos/.local/easybuild/software/Szip/2.1.1-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib', '/home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a/lib', '/home/centos/.local/easybuild/software/libffi/3.2.1-GCCcore-6.4.0/lib64', '/home/centos/.local/easybuild/software/libffi/3.2.1-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/GMP/6.1.2-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/SQLite/3.21.0-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/Tcl/8.6.8-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/libreadline/7.0-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/ncurses/6.0-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/zlib/1.2.11-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/bzip2/1.0.6-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/lib', '/home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/lib', '/home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib', '/home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/lib', '/home/centos/.local/easybuild/software/hwloc/1.11.8-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/numactl/2.0.11-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/binutils/2.28-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0', '/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib64', '/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib'] to ['/home/centos/.local/easybuild/software/netCDF-Fortran/4.4.4-foss-2018a/lib', '/home/centos/.local/easybuild/software/netCDF/4.6.0-foss-2018a/lib64', '/home/centos/.local/easybuild/software/cURL/7.58.0-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/HDF5/1.10.1-foss-2018a/lib', '/home/centos/.local/easybuild/software/Szip/2.1.1-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib', '/home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a/lib', '/home/centos/.local/easybuild/software/libffi/3.2.1-GCCcore-6.4.0/lib64', '/home/centos/.local/easybuild/software/libffi/3.2.1-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/GMP/6.1.2-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/SQLite/3.21.0-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/Tcl/8.6.8-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/libreadline/7.0-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/ncurses/6.0-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/zlib/1.2.11-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/bzip2/1.0.6-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/lib', '/home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/lib', '/home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib', '/home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/lib', '/home/centos/.local/easybuild/software/hwloc/1.11.8-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/numactl/2.0.11-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/binutils/2.28-GCCcore-6.4.0/lib', '/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0', '/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib64', '/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib']
== 2018-03-16 12:55:42,345 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /home/centos/.local/easybuild/software/netCDF-Fortran/4.4.4-foss-2018a/lib:/home/centos/.local/easybuild/software/netCDF/4.6.0-foss-2018a/lib64:/home/centos/.local/easybuild/software/cURL/7.58.0-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/HDF5/1.10.1-foss-2018a/lib:/home/centos/.local/easybuild/software/Szip/2.1.1-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib:/home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a/lib:/home/centos/.local/easybuild/software/libffi/3.2.1-GCCcore-6.4.0/lib64:/home/centos/.local/easybuild/software/libffi/3.2.1-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/GMP/6.1.2-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/SQLite/3.21.0-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/Tcl/8.6.8-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/libreadline/7.0-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/ncurses/6.0-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/zlib/1.2.11-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/bzip2/1.0.6-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/lib:/home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/lib:/home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib:/home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/lib:/home/centos/.local/easybuild/software/hwloc/1.11.8-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/numactl/2.0.11-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/binutils/2.28-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib64:/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib (previous value: '/home/centos/.local/easybuild/software/netCDF-Fortran/4.4.4-foss-2018a/lib:/home/centos/.local/easybuild/software/netCDF/4.6.0-foss-2018a/lib64:/home/centos/.local/easybuild/software/cURL/7.58.0-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/HDF5/1.10.1-foss-2018a/lib:/home/centos/.local/easybuild/software/Szip/2.1.1-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib:/home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a/lib:/home/centos/.local/easybuild/software/libffi/3.2.1-GCCcore-6.4.0/lib64:/home/centos/.local/easybuild/software/libffi/3.2.1-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/GMP/6.1.2-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/SQLite/3.21.0-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/Tcl/8.6.8-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/libreadline/7.0-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/ncurses/6.0-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/zlib/1.2.11-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/bzip2/1.0.6-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/lib:/home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/lib:/home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib:/home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/lib:/home/centos/.local/easybuild/software/hwloc/1.11.8-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/numactl/2.0.11-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/binutils/2.28-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib64:/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib')
== 2018-03-16 12:55:42,345 modules.py:707 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2018-03-16 12:55:42,345 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2018-03-16 12:55:42,346 modules.py:554 DEBUG Found cached result for 'module show foss/2018a' with key '('MODULEPATH=/home/centos/.local/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core', 'lmod', 'foss/2018a')': os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/centos/.local/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core";
os.environ["MODULEPATH"] = "/home/centos/.local/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core";
os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/centos/.local/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core";
os.environ["MODULEPATH"] = "/home/centos/.local/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "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";
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os.environ["_ModuleTable_Sz_"] = "3";
----------------------------------------------------------------------------
/home/centos/.local/easybuild/modules/all/foss/2018a.lua:
----------------------------------------------------------------------------
help([[
Description
===========
GNU Compiler Collection (GCC) based compiler toolchain, including
OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
More information
================
- Homepage: (none)
]])
whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, including
OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.")
whatis("Homepage: (none)")
conflict("foss")
load("GCC/6.4.0-2.28")
load("OpenMPI/2.1.2-GCC-6.4.0-2.28")
load("OpenBLAS/0.2.20-GCC-6.4.0-2.28")
load("FFTW/3.3.7-gompi-2018a")
load("ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20")
setenv("EBROOTFOSS","/home/centos/.local/easybuild/software/foss/2018a")
setenv("EBVERSIONFOSS","2018a")
setenv("EBDEVELFOSS","/home/centos/.local/easybuild/software/foss/2018a/easybuild/foss-2018a-easybuild-devel")
== 2018-03-16 12:55:42,347 modules.py:554 DEBUG Found cached result for 'module show foss/2018a' with key '('MODULEPATH=/home/centos/.local/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core', 'lmod', 'foss/2018a')': os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/centos/.local/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core";
os.environ["MODULEPATH"] = "/home/centos/.local/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core";
os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/centos/.local/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core";
os.environ["MODULEPATH"] = "/home/centos/.local/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "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";
os.environ["_ModuleTable003_"] = "bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0xpbnV4Oi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZTovdXNyL3NoYXJlL2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIixbInZlcnNpb24iXT0yLH0=";
os.environ["_ModuleTable_Sz_"] = "3";
----------------------------------------------------------------------------
/home/centos/.local/easybuild/modules/all/foss/2018a.lua:
----------------------------------------------------------------------------
help([[
Description
===========
GNU Compiler Collection (GCC) based compiler toolchain, including
OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
More information
================
- Homepage: (none)
]])
whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, including
OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.")
whatis("Homepage: (none)")
conflict("foss")
load("GCC/6.4.0-2.28")
load("OpenMPI/2.1.2-GCC-6.4.0-2.28")
load("OpenBLAS/0.2.20-GCC-6.4.0-2.28")
load("FFTW/3.3.7-gompi-2018a")
load("ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20")
setenv("EBROOTFOSS","/home/centos/.local/easybuild/software/foss/2018a")
setenv("EBVERSIONFOSS","2018a")
setenv("EBDEVELFOSS","/home/centos/.local/easybuild/software/foss/2018a/easybuild/foss-2018a-easybuild-devel")
== 2018-03-16 12:55:42,348 toolchain.py:600 DEBUG List of toolchain dependencies from toolchain module: ['GCC/6.4.0-2.28', 'OpenMPI/2.1.2-GCC-6.4.0-2.28', 'OpenBLAS/0.2.20-GCC-6.4.0-2.28', 'FFTW/3.3.7-gompi-2018a', 'ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20']
== 2018-03-16 12:55:42,348 toolchain.py:418 DEBUG Toolchain definition for {'dummy': True, 'versionsuffix': '', 'version': '2018a', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'foss', 'full_mod_name': 'foss/2018a', 'hidden': False, 'parsed': True, 'short_mod_name': 'foss/2018a'}: {'LAPACK': ['OpenBLAS'], 'SCALAPACK': ['ScaLAPACK'], 'BLAS': ['OpenBLAS'], 'FFT': ['FFTW'], 'BLACS': ['BLACS'], 'MPI': ['OpenMPI'], 'COMPILER': ['GCC']}
== 2018-03-16 12:55:42,349 toolchain.py:289 DEBUG get_software_version software version 2.0.2 for ScaLAPACK was found in environment
== 2018-03-16 12:55:42,349 mns.py:164 DEBUG Checking whether 'GCC/6.4.0-2.28' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False
== 2018-03-16 12:55:42,350 mns.py:164 DEBUG Checking whether 'OpenMPI/2.1.2-GCC-6.4.0-2.28' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False
== 2018-03-16 12:55:42,350 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.2.20-GCC-6.4.0-2.28' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False
== 2018-03-16 12:55:42,350 mns.py:164 DEBUG Checking whether 'FFTW/3.3.7-gompi-2018a' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False
== 2018-03-16 12:55:42,350 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False
== 2018-03-16 12:55:42,351 toolchain.py:610 DEBUG Removing BLACS from list of optional toolchain elements.
== 2018-03-16 12:55:42,351 toolchain.py:613 DEBUG List of toolchain elements from toolchain definition: set(['GCC', 'FFTW', 'OpenMPI', 'ScaLAPACK', 'OpenBLAS'])
== 2018-03-16 12:55:42,351 mns.py:164 DEBUG Checking whether 'GCC/6.4.0-2.28' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: True
== 2018-03-16 12:55:42,352 mns.py:164 DEBUG Checking whether 'OpenMPI/2.1.2-GCC-6.4.0-2.28' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False
== 2018-03-16 12:55:42,352 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.2.20-GCC-6.4.0-2.28' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False
== 2018-03-16 12:55:42,352 mns.py:164 DEBUG Checking whether 'FFTW/3.3.7-gompi-2018a' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False
== 2018-03-16 12:55:42,352 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False
== 2018-03-16 12:55:42,353 mns.py:164 DEBUG Checking whether 'GCC/6.4.0-2.28' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False
== 2018-03-16 12:55:42,353 mns.py:164 DEBUG Checking whether 'OpenMPI/2.1.2-GCC-6.4.0-2.28' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False
== 2018-03-16 12:55:42,353 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.2.20-GCC-6.4.0-2.28' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False
== 2018-03-16 12:55:42,353 mns.py:164 DEBUG Checking whether 'FFTW/3.3.7-gompi-2018a' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: True
== 2018-03-16 12:55:42,354 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False
== 2018-03-16 12:55:42,354 mns.py:164 DEBUG Checking whether 'GCC/6.4.0-2.28' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False
== 2018-03-16 12:55:42,354 mns.py:164 DEBUG Checking whether 'OpenMPI/2.1.2-GCC-6.4.0-2.28' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: True
== 2018-03-16 12:55:42,354 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.2.20-GCC-6.4.0-2.28' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False
== 2018-03-16 12:55:42,355 mns.py:164 DEBUG Checking whether 'FFTW/3.3.7-gompi-2018a' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False
== 2018-03-16 12:55:42,355 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False
== 2018-03-16 12:55:42,355 mns.py:164 DEBUG Checking whether 'GCC/6.4.0-2.28' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False
== 2018-03-16 12:55:42,356 mns.py:164 DEBUG Checking whether 'OpenMPI/2.1.2-GCC-6.4.0-2.28' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False
== 2018-03-16 12:55:42,356 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.2.20-GCC-6.4.0-2.28' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False
== 2018-03-16 12:55:42,356 mns.py:164 DEBUG Checking whether 'FFTW/3.3.7-gompi-2018a' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False
== 2018-03-16 12:55:42,356 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: True
== 2018-03-16 12:55:42,357 mns.py:164 DEBUG Checking whether 'GCC/6.4.0-2.28' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False
== 2018-03-16 12:55:42,357 mns.py:164 DEBUG Checking whether 'OpenMPI/2.1.2-GCC-6.4.0-2.28' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False
== 2018-03-16 12:55:42,357 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.2.20-GCC-6.4.0-2.28' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: True
== 2018-03-16 12:55:42,357 mns.py:164 DEBUG Checking whether 'FFTW/3.3.7-gompi-2018a' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False
== 2018-03-16 12:55:42,358 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False
== 2018-03-16 12:55:42,358 toolchain.py:616 INFO List of toolchain dependency modules and toolchain definition match!
== 2018-03-16 12:55:42,360 options.py:90 WARNING option: option with name _opt_CC returns None
== 2018-03-16 12:55:42,360 options.py:90 WARNING option: option with name _opt_CXX returns None
== 2018-03-16 12:55:42,360 options.py:90 WARNING option: option with name _opt_F77 returns None
== 2018-03-16 12:55:42,360 options.py:90 WARNING option: option with name _opt_F90 returns None
== 2018-03-16 12:55:42,361 options.py:90 WARNING option: option with name _opt_FC returns None
== 2018-03-16 12:55:42,362 compiler.py:322 INFO _set_optimal_architecture: using march=native as optarch for x86_64.
== 2018-03-16 12:55:42,364 toolchain.py:289 DEBUG get_software_version software version 2.1.2 for OpenMPI was found in environment
== 2018-03-16 12:55:42,366 mpi.py:130 DEBUG usempi set: defining CC_SEQ as gcc
== 2018-03-16 12:55:42,367 mpi.py:133 DEBUG usempi set: switching CC value gcc for MPICC value mpicc
== 2018-03-16 12:55:42,367 mpi.py:130 DEBUG usempi set: defining CXX_SEQ as g++
== 2018-03-16 12:55:42,368 mpi.py:133 DEBUG usempi set: switching CXX value g++ for MPICXX value mpicxx
== 2018-03-16 12:55:42,369 mpi.py:130 DEBUG usempi set: defining F77_SEQ as gfortran
== 2018-03-16 12:55:42,369 mpi.py:133 DEBUG usempi set: switching F77 value gfortran for MPIF77 value mpifort
== 2018-03-16 12:55:42,370 mpi.py:130 DEBUG usempi set: defining F90_SEQ as gfortran
== 2018-03-16 12:55:42,371 mpi.py:133 DEBUG usempi set: switching F90 value gfortran for MPIF90 value mpifort
== 2018-03-16 12:55:42,372 mpi.py:130 DEBUG usempi set: defining FC_SEQ as gfortran
== 2018-03-16 12:55:42,372 mpi.py:133 DEBUG usempi set: switching FC value gfortran for MPIFC value mpifort
== 2018-03-16 12:55:42,373 toolchain.py:280 DEBUG get_software_root software root /home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28 for OpenMPI was found in environment
== 2018-03-16 12:55:42,376 toolchain.py:280 DEBUG get_software_root software root /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28 for OpenBLAS was found in environment
== 2018-03-16 12:55:42,376 toolchain.py:280 DEBUG get_software_root software root /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28 for OpenBLAS was found in environment
== 2018-03-16 12:55:42,377 variables.py:201 WARNING flags_for_subdirs: directory /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib64 was not found
== 2018-03-16 12:55:42,383 toolchain.py:280 DEBUG get_software_root software root /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28 for OpenBLAS was found in environment
== 2018-03-16 12:55:42,383 variables.py:201 WARNING flags_for_subdirs: directory /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib64 was not found
== 2018-03-16 12:55:42,383 toolchain.py:289 DEBUG get_software_version software version 2.0.2 for ScaLAPACK was found in environment
== 2018-03-16 12:55:42,388 toolchain.py:280 DEBUG get_software_root software root /home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20 for ScaLAPACK was found in environment
== 2018-03-16 12:55:42,389 toolchain.py:280 DEBUG get_software_root software root /home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20 for ScaLAPACK was found in environment
== 2018-03-16 12:55:42,389 variables.py:201 WARNING flags_for_subdirs: directory /home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/lib64 was not found
== 2018-03-16 12:55:42,390 toolchain.py:289 DEBUG get_software_version software version 3.3.7 for FFTW was found in environment
== 2018-03-16 12:55:42,391 toolchain.py:280 DEBUG get_software_root software root /home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a for FFTW was found in environment
== 2018-03-16 12:55:42,392 toolchain.py:280 DEBUG get_software_root software root /home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a for FFTW was found in environment
== 2018-03-16 12:55:42,392 variables.py:201 WARNING flags_for_subdirs: directory /home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/lib64 was not found
== 2018-03-16 12:55:42,393 toolchain.py:692 DEBUG prepare: set additional variables onlymod=False
== 2018-03-16 12:55:42,394 toolchain.py:280 DEBUG get_software_root software root /home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a for Python was found in environment
== 2018-03-16 12:55:42,394 toolchain.py:280 DEBUG get_software_root software root /home/centos/.local/easybuild/software/netCDF/4.6.0-foss-2018a for netCDF was found in environment
== 2018-03-16 12:55:42,394 toolchain.py:280 DEBUG get_software_root software root /home/centos/.local/easybuild/software/netCDF-Fortran/4.4.4-foss-2018a for netCDF-Fortran was found in environment
== 2018-03-16 12:55:42,394 toolchain.py:280 DEBUG get_software_root software root /home/centos/.local/easybuild/software/pkg-config/0.29.2-GCCcore-6.4.0 for pkg-config was found in environment
== 2018-03-16 12:55:42,395 variables.py:201 WARNING flags_for_subdirs: directory /home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a/lib64 was not found
== 2018-03-16 12:55:42,395 variables.py:201 WARNING flags_for_subdirs: directory /home/centos/.local/easybuild/software/netCDF/4.6.0-foss-2018a/lib was not found
== 2018-03-16 12:55:42,396 variables.py:201 WARNING flags_for_subdirs: directory /home/centos/.local/easybuild/software/netCDF-Fortran/4.4.4-foss-2018a/lib64 was not found
== 2018-03-16 12:55:42,396 variables.py:201 WARNING flags_for_subdirs: directory /home/centos/.local/easybuild/software/pkg-config/0.29.2-GCCcore-6.4.0/include was not found
== 2018-03-16 12:55:42,396 variables.py:201 WARNING flags_for_subdirs: directory /home/centos/.local/easybuild/software/pkg-config/0.29.2-GCCcore-6.4.0/lib64 was not found
== 2018-03-16 12:55:42,397 variables.py:201 WARNING flags_for_subdirs: directory /home/centos/.local/easybuild/software/pkg-config/0.29.2-GCCcore-6.4.0/lib was not found
== 2018-03-16 12:55:42,402 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_INC_DIR to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/include
== 2018-03-16 12:55:42,403 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/include (previously undefined)
== 2018-03-16 12:55:42,403 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/include (previously undefined)
== 2018-03-16 12:55:42,403 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_INC_DIR to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/include
== 2018-03-16 12:55:42,403 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/include (previously undefined)
== 2018-03-16 12:55:42,404 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/include (previously undefined)
== 2018-03-16 12:55:42,404 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_LIB_DIR to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib
== 2018-03-16 12:55:42,404 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib (previously undefined)
== 2018-03-16 12:55:42,404 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib (previously undefined)
== 2018-03-16 12:55:42,405 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_MT_STATIC_LIBS to libopenblas.a,libgfortran.a
== 2018-03-16 12:55:42,405 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2018-03-16 12:55:42,405 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2018-03-16 12:55:42,405 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_STATIC_LIBS to libopenblas.a,libgfortran.a
== 2018-03-16 12:55:42,405 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2018-03-16 12:55:42,406 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2018-03-16 12:55:42,406 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_LIB_DIR to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib
== 2018-03-16 12:55:42,406 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib (previously undefined)
== 2018-03-16 12:55:42,406 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib (previously undefined)
== 2018-03-16 12:55:42,407 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_MT_STATIC_LIBS to libopenblas.a,libgfortran.a
== 2018-03-16 12:55:42,407 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2018-03-16 12:55:42,407 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2018-03-16 12:55:42,407 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_STATIC_LIBS to libopenblas.a,libgfortran.a
== 2018-03-16 12:55:42,407 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2018-03-16 12:55:42,408 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2018-03-16 12:55:42,408 toolchain.py:901 DEBUG _setenv_variables: setting environment variable CC to mpicc
== 2018-03-16 12:55:42,408 environment.py:97 INFO Environment variable CC set to mpicc (previously undefined)
== 2018-03-16 12:55:42,408 environment.py:97 INFO Environment variable EBVARCC set to mpicc (previously undefined)
== 2018-03-16 12:55:42,409 toolchain.py:901 DEBUG _setenv_variables: setting environment variable CC_SEQ to gcc
== 2018-03-16 12:55:42,409 environment.py:97 INFO Environment variable CC_SEQ set to gcc (previously undefined)
== 2018-03-16 12:55:42,409 environment.py:97 INFO Environment variable EBVARCC_SEQ set to gcc (previously undefined)
== 2018-03-16 12:55:42,409 toolchain.py:901 DEBUG _setenv_variables: setting environment variable CFLAGS to -O2 -march=native
== 2018-03-16 12:55:42,409 environment.py:97 INFO Environment variable CFLAGS set to -O2 -march=native (previously undefined)
== 2018-03-16 12:55:42,410 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -march=native (previously undefined)
== 2018-03-16 12:55:42,410 toolchain.py:901 DEBUG _setenv_variables: setting environment variable CPPFLAGS to -I/home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/include -I/home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/include -I/home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/include -I/home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a/include -I/home/centos/.local/easybuild/software/netCDF/4.6.0-foss-2018a/include -I/home/centos/.local/easybuild/software/netCDF-Fortran/4.4.4-foss-2018a/include
== 2018-03-16 12:55:42,410 environment.py:97 INFO Environment variable CPPFLAGS set to -I/home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/include -I/home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/include -I/home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/include -I/home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a/include -I/home/centos/.local/easybuild/software/netCDF/4.6.0-foss-2018a/include -I/home/centos/.local/easybuild/software/netCDF-Fortran/4.4.4-foss-2018a/include (previously undefined)
== 2018-03-16 12:55:42,410 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/include -I/home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/include -I/home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/include -I/home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a/include -I/home/centos/.local/easybuild/software/netCDF/4.6.0-foss-2018a/include -I/home/centos/.local/easybuild/software/netCDF-Fortran/4.4.4-foss-2018a/include (previously undefined)
== 2018-03-16 12:55:42,411 toolchain.py:901 DEBUG _setenv_variables: setting environment variable CXX to mpicxx
== 2018-03-16 12:55:42,411 environment.py:97 INFO Environment variable CXX set to mpicxx (previously undefined)
== 2018-03-16 12:55:42,411 environment.py:97 INFO Environment variable EBVARCXX set to mpicxx (previously undefined)
== 2018-03-16 12:55:42,411 toolchain.py:901 DEBUG _setenv_variables: setting environment variable CXXFLAGS to -O2 -march=native
== 2018-03-16 12:55:42,411 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -march=native (previously undefined)
== 2018-03-16 12:55:42,412 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -march=native (previously undefined)
== 2018-03-16 12:55:42,412 toolchain.py:901 DEBUG _setenv_variables: setting environment variable CXX_SEQ to g++
== 2018-03-16 12:55:42,412 environment.py:97 INFO Environment variable CXX_SEQ set to g++ (previously undefined)
== 2018-03-16 12:55:42,412 environment.py:97 INFO Environment variable EBVARCXX_SEQ set to g++ (previously undefined)
== 2018-03-16 12:55:42,412 toolchain.py:901 DEBUG _setenv_variables: setting environment variable F77 to mpifort
== 2018-03-16 12:55:42,413 environment.py:97 INFO Environment variable F77 set to mpifort (previously undefined)
== 2018-03-16 12:55:42,413 environment.py:97 INFO Environment variable EBVARF77 set to mpifort (previously undefined)
== 2018-03-16 12:55:42,413 toolchain.py:901 DEBUG _setenv_variables: setting environment variable F77_SEQ to gfortran
== 2018-03-16 12:55:42,413 environment.py:97 INFO Environment variable F77_SEQ set to gfortran (previously undefined)
== 2018-03-16 12:55:42,414 environment.py:97 INFO Environment variable EBVARF77_SEQ set to gfortran (previously undefined)
== 2018-03-16 12:55:42,414 toolchain.py:901 DEBUG _setenv_variables: setting environment variable F90 to mpifort
== 2018-03-16 12:55:42,414 environment.py:97 INFO Environment variable F90 set to mpifort (previously undefined)
== 2018-03-16 12:55:42,414 environment.py:97 INFO Environment variable EBVARF90 set to mpifort (previously undefined)
== 2018-03-16 12:55:42,414 toolchain.py:901 DEBUG _setenv_variables: setting environment variable F90FLAGS to -O2 -march=native
== 2018-03-16 12:55:42,415 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -march=native (previously undefined)
== 2018-03-16 12:55:42,415 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -march=native (previously undefined)
== 2018-03-16 12:55:42,415 toolchain.py:901 DEBUG _setenv_variables: setting environment variable F90_SEQ to gfortran
== 2018-03-16 12:55:42,415 environment.py:97 INFO Environment variable F90_SEQ set to gfortran (previously undefined)
== 2018-03-16 12:55:42,416 environment.py:97 INFO Environment variable EBVARF90_SEQ set to gfortran (previously undefined)
== 2018-03-16 12:55:42,416 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FC to mpifort
== 2018-03-16 12:55:42,416 environment.py:97 INFO Environment variable FC set to mpifort (previously undefined)
== 2018-03-16 12:55:42,416 environment.py:97 INFO Environment variable EBVARFC set to mpifort (previously undefined)
== 2018-03-16 12:55:42,416 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FCFLAGS to -O2 -march=native
== 2018-03-16 12:55:42,417 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -march=native (previously undefined)
== 2018-03-16 12:55:42,417 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -march=native (previously undefined)
== 2018-03-16 12:55:42,417 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FC_SEQ to gfortran
== 2018-03-16 12:55:42,417 environment.py:97 INFO Environment variable FC_SEQ set to gfortran (previously undefined)
== 2018-03-16 12:55:42,418 environment.py:97 INFO Environment variable EBVARFC_SEQ set to gfortran (previously undefined)
== 2018-03-16 12:55:42,418 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFLAGS to -O2 -march=native
== 2018-03-16 12:55:42,418 environment.py:97 INFO Environment variable FFLAGS set to -O2 -march=native (previously undefined)
== 2018-03-16 12:55:42,418 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -march=native (previously undefined)
== 2018-03-16 12:55:42,418 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFTW_INC_DIR to /home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/include
== 2018-03-16 12:55:42,419 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/include (previously undefined)
== 2018-03-16 12:55:42,419 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/include (previously undefined)
== 2018-03-16 12:55:42,419 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFTW_LIB_DIR to /home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/lib
== 2018-03-16 12:55:42,419 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/lib (previously undefined)
== 2018-03-16 12:55:42,420 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/lib (previously undefined)
== 2018-03-16 12:55:42,420 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS to libfftw3_mpi.a,libfftw3.a
== 2018-03-16 12:55:42,420 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined)
== 2018-03-16 12:55:42,420 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined)
== 2018-03-16 12:55:42,420 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS_MT to -fftw3 -pthread
== 2018-03-16 12:55:42,421 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined)
== 2018-03-16 12:55:42,421 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined)
== 2018-03-16 12:55:42,421 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFT_INC_DIR to /home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/include
== 2018-03-16 12:55:42,421 environment.py:97 INFO Environment variable FFT_INC_DIR set to /home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/include (previously undefined)
== 2018-03-16 12:55:42,422 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/include (previously undefined)
== 2018-03-16 12:55:42,422 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFT_LIB_DIR to /home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/lib
== 2018-03-16 12:55:42,422 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/lib (previously undefined)
== 2018-03-16 12:55:42,422 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/lib (previously undefined)
== 2018-03-16 12:55:42,422 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS to libfftw3_mpi.a,libfftw3.a
== 2018-03-16 12:55:42,423 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined)
== 2018-03-16 12:55:42,423 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined)
== 2018-03-16 12:55:42,423 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS_MT to libfftw3.a,libpthread.a
== 2018-03-16 12:55:42,423 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined)
== 2018-03-16 12:55:42,424 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined)
== 2018-03-16 12:55:42,424 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FLIBS to -lgfortran
== 2018-03-16 12:55:42,424 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined)
== 2018-03-16 12:55:42,424 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined)
== 2018-03-16 12:55:42,424 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LAPACK_INC_DIR to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/include
== 2018-03-16 12:55:42,425 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/include (previously undefined)
== 2018-03-16 12:55:42,425 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/include (previously undefined)
== 2018-03-16 12:55:42,425 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LAPACK_LIB_DIR to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib
== 2018-03-16 12:55:42,425 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib (previously undefined)
== 2018-03-16 12:55:42,426 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib (previously undefined)
== 2018-03-16 12:55:42,426 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LAPACK_MT_STATIC_LIBS to libopenblas.a,libgfortran.a
== 2018-03-16 12:55:42,426 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2018-03-16 12:55:42,426 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2018-03-16 12:55:42,426 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LAPACK_STATIC_LIBS to libopenblas.a,libgfortran.a
== 2018-03-16 12:55:42,427 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2018-03-16 12:55:42,427 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2018-03-16 12:55:42,427 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LDFLAGS to -L/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib64 -L/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib -L/home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib -L/home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/lib -L/home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/lib -L/home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a/lib -L/home/centos/.local/easybuild/software/netCDF/4.6.0-foss-2018a/lib64 -L/home/centos/.local/easybuild/software/netCDF-Fortran/4.4.4-foss-2018a/lib
== 2018-03-16 12:55:42,427 environment.py:97 INFO Environment variable LDFLAGS set to -L/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib64 -L/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib -L/home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib -L/home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/lib -L/home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/lib -L/home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a/lib -L/home/centos/.local/easybuild/software/netCDF/4.6.0-foss-2018a/lib64 -L/home/centos/.local/easybuild/software/netCDF-Fortran/4.4.4-foss-2018a/lib (previously undefined)
== 2018-03-16 12:55:42,428 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib64 -L/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib -L/home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib -L/home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/lib -L/home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/lib -L/home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a/lib -L/home/centos/.local/easybuild/software/netCDF/4.6.0-foss-2018a/lib64 -L/home/centos/.local/easybuild/software/netCDF-Fortran/4.4.4-foss-2018a/lib (previously undefined)
== 2018-03-16 12:55:42,428 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBBLAS to -lopenblas -lgfortran
== 2018-03-16 12:55:42,428 environment.py:97 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previously undefined)
== 2018-03-16 12:55:42,428 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previously undefined)
== 2018-03-16 12:55:42,428 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBBLAS_MT to -lopenblas -lgfortran
== 2018-03-16 12:55:42,429 environment.py:97 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran (previously undefined)
== 2018-03-16 12:55:42,429 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran (previously undefined)
== 2018-03-16 12:55:42,429 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBFFT to -lfftw3_mpi -lfftw3
== 2018-03-16 12:55:42,429 environment.py:97 INFO Environment variable LIBFFT set to -lfftw3_mpi -lfftw3 (previously undefined)
== 2018-03-16 12:55:42,430 environment.py:97 INFO Environment variable EBVARLIBFFT set to -lfftw3_mpi -lfftw3 (previously undefined)
== 2018-03-16 12:55:42,430 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBFFT_MT to -lfftw3 -lpthread
== 2018-03-16 12:55:42,430 environment.py:97 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined)
== 2018-03-16 12:55:42,430 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined)
== 2018-03-16 12:55:42,430 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBLAPACK to -lopenblas -lgfortran
== 2018-03-16 12:55:42,431 environment.py:97 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previously undefined)
== 2018-03-16 12:55:42,431 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previously undefined)
== 2018-03-16 12:55:42,431 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT to -lopenblas -lgfortran
== 2018-03-16 12:55:42,431 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined)
== 2018-03-16 12:55:42,432 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined)
== 2018-03-16 12:55:42,432 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT_ONLY to -lopenblas -lgfortran
== 2018-03-16 12:55:42,432 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2018-03-16 12:55:42,432 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2018-03-16 12:55:42,432 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBLAPACK_ONLY to -lopenblas -lgfortran
== 2018-03-16 12:55:42,433 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2018-03-16 12:55:42,433 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2018-03-16 12:55:42,433 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBS to -lm -lpthread
== 2018-03-16 12:55:42,433 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined)
== 2018-03-16 12:55:42,434 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined)
== 2018-03-16 12:55:42,434 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK to -lscalapack -lopenblas -lgfortran
== 2018-03-16 12:55:42,434 environment.py:97 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined)
== 2018-03-16 12:55:42,434 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined)
== 2018-03-16 12:55:42,434 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT to -lscalapack -lopenblas -lpthread -lgfortran
== 2018-03-16 12:55:42,435 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined)
== 2018-03-16 12:55:42,435 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined)
== 2018-03-16 12:55:42,435 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT_ONLY to -lscalapack -lgfortran
== 2018-03-16 12:55:42,435 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2018-03-16 12:55:42,436 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2018-03-16 12:55:42,436 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_ONLY to -lscalapack -lgfortran
== 2018-03-16 12:55:42,436 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2018-03-16 12:55:42,436 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2018-03-16 12:55:42,436 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPICC to mpicc
== 2018-03-16 12:55:42,437 environment.py:97 INFO Environment variable MPICC set to mpicc (previously undefined)
== 2018-03-16 12:55:42,437 environment.py:97 INFO Environment variable EBVARMPICC set to mpicc (previously undefined)
== 2018-03-16 12:55:42,437 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPICXX to mpicxx
== 2018-03-16 12:55:42,437 environment.py:97 INFO Environment variable MPICXX set to mpicxx (previously undefined)
== 2018-03-16 12:55:42,438 environment.py:97 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined)
== 2018-03-16 12:55:42,438 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPIF77 to mpifort
== 2018-03-16 12:55:42,438 environment.py:97 INFO Environment variable MPIF77 set to mpifort (previously undefined)
== 2018-03-16 12:55:42,438 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined)
== 2018-03-16 12:55:42,438 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPIF90 to mpifort
== 2018-03-16 12:55:42,439 environment.py:97 INFO Environment variable MPIF90 set to mpifort (previously undefined)
== 2018-03-16 12:55:42,439 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined)
== 2018-03-16 12:55:42,439 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPIFC to mpifort
== 2018-03-16 12:55:42,439 environment.py:97 INFO Environment variable MPIFC set to mpifort (previously undefined)
== 2018-03-16 12:55:42,440 environment.py:97 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined)
== 2018-03-16 12:55:42,440 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPI_INC_DIR to /home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/include
== 2018-03-16 12:55:42,440 environment.py:97 INFO Environment variable MPI_INC_DIR set to /home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/include (previously undefined)
== 2018-03-16 12:55:42,440 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/include (previously undefined)
== 2018-03-16 12:55:42,440 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPI_LIB_DIR to /home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/lib
== 2018-03-16 12:55:42,441 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/lib (previously undefined)
== 2018-03-16 12:55:42,441 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/lib (previously undefined)
== 2018-03-16 12:55:42,441 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPI_LIB_SHARED to /home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/lib/libmpi.so
== 2018-03-16 12:55:42,441 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/lib/libmpi.so (previously undefined)
== 2018-03-16 12:55:42,442 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/lib/libmpi.so (previously undefined)
== 2018-03-16 12:55:42,442 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPI_LIB_STATIC to
== 2018-03-16 12:55:42,442 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to (previously undefined)
== 2018-03-16 12:55:42,442 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined)
== 2018-03-16 12:55:42,442 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_CC to gcc
== 2018-03-16 12:55:42,443 environment.py:97 INFO Environment variable OMPI_CC set to gcc (previously undefined)
== 2018-03-16 12:55:42,443 environment.py:97 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined)
== 2018-03-16 12:55:42,443 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_CXX to g++
== 2018-03-16 12:55:42,443 environment.py:97 INFO Environment variable OMPI_CXX set to g++ (previously undefined)
== 2018-03-16 12:55:42,444 environment.py:97 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined)
== 2018-03-16 12:55:42,444 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_F77 to gfortran
== 2018-03-16 12:55:42,444 environment.py:97 INFO Environment variable OMPI_F77 set to gfortran (previously undefined)
== 2018-03-16 12:55:42,444 environment.py:97 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined)
== 2018-03-16 12:55:42,444 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_F90 to gfortran
== 2018-03-16 12:55:42,445 environment.py:97 INFO Environment variable OMPI_F90 set to gfortran (previously undefined)
== 2018-03-16 12:55:42,445 environment.py:97 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined)
== 2018-03-16 12:55:42,445 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_FC to gfortran
== 2018-03-16 12:55:42,445 environment.py:97 INFO Environment variable OMPI_FC set to gfortran (previously undefined)
== 2018-03-16 12:55:42,445 environment.py:97 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined)
== 2018-03-16 12:55:42,446 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OPTFLAGS to -O2 -march=native
== 2018-03-16 12:55:42,446 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -march=native (previously undefined)
== 2018-03-16 12:55:42,446 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -march=native (previously undefined)
== 2018-03-16 12:55:42,446 toolchain.py:901 DEBUG _setenv_variables: setting environment variable PRECFLAGS to
== 2018-03-16 12:55:42,447 environment.py:97 INFO Environment variable PRECFLAGS set to (previously undefined)
== 2018-03-16 12:55:42,447 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to (previously undefined)
== 2018-03-16 12:55:42,447 toolchain.py:901 DEBUG _setenv_variables: setting environment variable SCALAPACK_INC_DIR to /home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/include
== 2018-03-16 12:55:42,447 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/include (previously undefined)
== 2018-03-16 12:55:42,447 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/include (previously undefined)
== 2018-03-16 12:55:42,448 toolchain.py:901 DEBUG _setenv_variables: setting environment variable SCALAPACK_LIB_DIR to /home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/lib
== 2018-03-16 12:55:42,448 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/lib (previously undefined)
== 2018-03-16 12:55:42,448 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/lib (previously undefined)
== 2018-03-16 12:55:42,448 toolchain.py:901 DEBUG _setenv_variables: setting environment variable SCALAPACK_MT_STATIC_LIBS to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a
== 2018-03-16 12:55:42,449 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2018-03-16 12:55:42,449 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2018-03-16 12:55:42,449 toolchain.py:901 DEBUG _setenv_variables: setting environment variable SCALAPACK_STATIC_LIBS to libscalapack.a,libopenblas.a,libgfortran.a
== 2018-03-16 12:55:42,449 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined)
== 2018-03-16 12:55:42,449 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined)
== 2018-03-16 12:55:42,450 toolchain.py:289 DEBUG get_software_version software version 2.1.2 for OpenMPI was found in environment
== 2018-03-16 12:55:42,450 easyblock.py:1430 INFO Using /home/centos/.local/easybuild/software/AmberTools/17-foss-2018a/ as start dir
== 2018-03-16 12:55:42,450 easyblock.py:1433 DEBUG Changed to real build directory /home/centos/.local/easybuild/software/AmberTools/17-foss-2018a/ (start_dir)
== 2018-03-16 12:55:42,451 easyblock.py:2441 DEBUG Not skipping configure step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False
== 2018-03-16 12:55:42,451 build_log.py:233 INFO configuring...
== 2018-03-16 12:55:42,451 easyblock.py:2449 INFO Starting configure step
== 2018-03-16 12:55:42,452 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1ec37d0>
== 2018-03-16 12:55:42,452 templates.py:175 DEBUG version found in easyconfig is 17
== 2018-03-16 12:55:42,452 templates.py:175 DEBUG version found in easyconfig is 17
== 2018-03-16 12:55:42,452 templates.py:219 DEBUG name: github_account, config: None
== 2018-03-16 12:55:42,453 templates.py:219 DEBUG name: name, config: AmberTools
== 2018-03-16 12:55:42,453 templates.py:219 DEBUG name: version, config: 17
== 2018-03-16 12:55:42,453 templates.py:219 DEBUG name: versionsuffix, config:
== 2018-03-16 12:55:42,453 templates.py:219 DEBUG name: versionprefix, config:
== 2018-03-16 12:55:42,454 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1ec37d0>
== 2018-03-16 12:55:42,454 templates.py:175 DEBUG version found in easyconfig is 17
== 2018-03-16 12:55:42,454 templates.py:175 DEBUG version found in easyconfig is 17
== 2018-03-16 12:55:42,454 templates.py:219 DEBUG name: github_account, config: None
== 2018-03-16 12:55:42,454 templates.py:219 DEBUG name: name, config: AmberTools
== 2018-03-16 12:55:42,455 templates.py:219 DEBUG name: version, config: 17
== 2018-03-16 12:55:42,455 templates.py:219 DEBUG name: versionsuffix, config:
== 2018-03-16 12:55:42,455 templates.py:219 DEBUG name: versionprefix, config:
== 2018-03-16 12:55:42,455 easyblock.py:2455 INFO Running method configure_step part of step configure
== 2018-03-16 12:55:42,456 easyblock.py:2441 DEBUG Not skipping build step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False
== 2018-03-16 12:55:42,456 build_log.py:233 INFO building...
== 2018-03-16 12:55:42,456 easyblock.py:2449 INFO Starting build step
== 2018-03-16 12:55:42,456 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1ec37d0>
== 2018-03-16 12:55:42,456 templates.py:175 DEBUG version found in easyconfig is 17
== 2018-03-16 12:55:42,457 templates.py:175 DEBUG version found in easyconfig is 17
== 2018-03-16 12:55:42,457 templates.py:219 DEBUG name: github_account, config: None
== 2018-03-16 12:55:42,457 templates.py:219 DEBUG name: name, config: AmberTools
== 2018-03-16 12:55:42,457 templates.py:219 DEBUG name: version, config: 17
== 2018-03-16 12:55:42,458 templates.py:219 DEBUG name: versionsuffix, config:
== 2018-03-16 12:55:42,458 templates.py:219 DEBUG name: versionprefix, config:
== 2018-03-16 12:55:42,458 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1ec37d0>
== 2018-03-16 12:55:42,458 templates.py:175 DEBUG version found in easyconfig is 17
== 2018-03-16 12:55:42,458 templates.py:175 DEBUG version found in easyconfig is 17
== 2018-03-16 12:55:42,459 templates.py:219 DEBUG name: github_account, config: None
== 2018-03-16 12:55:42,459 templates.py:219 DEBUG name: name, config: AmberTools
== 2018-03-16 12:55:42,459 templates.py:219 DEBUG name: version, config: 17
== 2018-03-16 12:55:42,459 templates.py:219 DEBUG name: versionsuffix, config:
== 2018-03-16 12:55:42,459 templates.py:219 DEBUG name: versionprefix, config:
== 2018-03-16 12:55:42,460 easyblock.py:2455 INFO Running method build_step part of step build
== 2018-03-16 12:55:42,460 easyblock.py:2441 DEBUG Not skipping test step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False
== 2018-03-16 12:55:42,460 build_log.py:233 INFO testing...
== 2018-03-16 12:55:42,460 easyblock.py:2449 INFO Starting test step
== 2018-03-16 12:55:42,461 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1ec37d0>
== 2018-03-16 12:55:42,461 templates.py:175 DEBUG version found in easyconfig is 17
== 2018-03-16 12:55:42,461 templates.py:175 DEBUG version found in easyconfig is 17
== 2018-03-16 12:55:42,461 templates.py:219 DEBUG name: github_account, config: None
== 2018-03-16 12:55:42,462 templates.py:219 DEBUG name: name, config: AmberTools
== 2018-03-16 12:55:42,462 templates.py:219 DEBUG name: version, config: 17
== 2018-03-16 12:55:42,462 templates.py:219 DEBUG name: versionsuffix, config:
== 2018-03-16 12:55:42,462 templates.py:219 DEBUG name: versionprefix, config:
== 2018-03-16 12:55:42,462 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1ec37d0>
== 2018-03-16 12:55:42,463 templates.py:175 DEBUG version found in easyconfig is 17
== 2018-03-16 12:55:42,463 templates.py:175 DEBUG version found in easyconfig is 17
== 2018-03-16 12:55:42,463 templates.py:219 DEBUG name: github_account, config: None
== 2018-03-16 12:55:42,463 templates.py:219 DEBUG name: name, config: AmberTools
== 2018-03-16 12:55:42,464 templates.py:219 DEBUG name: version, config: 17
== 2018-03-16 12:55:42,464 templates.py:219 DEBUG name: versionsuffix, config:
== 2018-03-16 12:55:42,464 templates.py:219 DEBUG name: versionprefix, config:
== 2018-03-16 12:55:42,464 easyblock.py:2455 INFO Running method test_step part of step test
== 2018-03-16 12:55:42,465 easyblock.py:2441 DEBUG Not skipping install step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False
== 2018-03-16 12:55:42,465 build_log.py:233 INFO installing...
== 2018-03-16 12:55:42,465 easyblock.py:2449 INFO Starting install step
== 2018-03-16 12:55:42,465 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1ec37d0>
== 2018-03-16 12:55:42,465 templates.py:175 DEBUG version found in easyconfig is 17
== 2018-03-16 12:55:42,466 templates.py:175 DEBUG version found in easyconfig is 17
== 2018-03-16 12:55:42,466 templates.py:219 DEBUG name: github_account, config: None
== 2018-03-16 12:55:42,466 templates.py:219 DEBUG name: name, config: AmberTools
== 2018-03-16 12:55:42,466 templates.py:219 DEBUG name: version, config: 17
== 2018-03-16 12:55:42,467 templates.py:219 DEBUG name: versionsuffix, config:
== 2018-03-16 12:55:42,467 templates.py:219 DEBUG name: versionprefix, config:
== 2018-03-16 12:55:42,467 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1ec37d0>
== 2018-03-16 12:55:42,467 templates.py:175 DEBUG version found in easyconfig is 17
== 2018-03-16 12:55:42,467 templates.py:175 DEBUG version found in easyconfig is 17
== 2018-03-16 12:55:42,468 templates.py:219 DEBUG name: github_account, config: None
== 2018-03-16 12:55:42,468 templates.py:219 DEBUG name: name, config: AmberTools
== 2018-03-16 12:55:42,468 templates.py:219 DEBUG name: version, config: 17
== 2018-03-16 12:55:42,468 templates.py:219 DEBUG name: versionsuffix, config:
== 2018-03-16 12:55:42,468 templates.py:219 DEBUG name: versionprefix, config:
== 2018-03-16 12:55:42,469 easyblock.py:2455 INFO Running method stage_install_step part of step install
== 2018-03-16 12:55:42,469 easyblock.py:2455 INFO Running method make_installdir part of step install
== 2018-03-16 12:55:42,469 easyblock.py:870 DEBUG Creating the installation directory /home/centos/.local/easybuild/software/AmberTools/17-foss-2018a (cleanup: False)
== 2018-03-16 12:55:42,469 easyblock.py:881 INFO Found old directory /home/centos/.local/easybuild/software/AmberTools/17-foss-2018a
== 2018-03-16 12:55:42,470 easyblock.py:883 INFO Keeping old directory /home/centos/.local/easybuild/software/AmberTools/17-foss-2018a (hopefully you know what you are doing)
== 2018-03-16 12:55:42,470 easyblock.py:2455 INFO Running method install_step part of step install
== 2018-03-16 12:55:42,470 environment.py:118 INFO Unsetting environment variable LIBS (value: -lm -lpthread)
== 2018-03-16 12:55:42,470 environment.py:97 INFO Environment variable GOTO set to -lopenblas -lgfortran (previously undefined)
== 2018-03-16 12:55:42,471 environment.py:97 INFO Environment variable MPI_HOME set to /home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28 (previously undefined)
== 2018-03-16 12:55:42,471 pythonpackage.py:157 DEBUG Determining Python library directory using command 'python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))''
== 2018-03-16 12:55:42,471 run.py:163 DEBUG run_cmd: running cmd python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' (in /home/centos/.local/easybuild/software/AmberTools/17-foss-2018a)
== 2018-03-16 12:55:42,471 run.py:183 INFO running cmd: python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))'
== 2018-03-16 12:55:45,842 run.py:488 DEBUG cmd "python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))'" exited with exit code 0 and output:
/tmp/lib/python2.7/site-packages
== 2018-03-16 12:55:45,842 run.py:522 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-03-16 12:55:45,843 pythonpackage.py:168 DEBUG Determined pylibdir using 'python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))'': lib/python2.7/site-packages
== 2018-03-16 12:55:45,843 environment.py:97 INFO Environment variable PYTHONPATH set to /home/centos/.local/easybuild/software/AmberTools/17-foss-2018a/lib/python2.7/site-packages: (previously undefined)
== 2018-03-16 12:55:45,844 environment.py:97 INFO Environment variable DO_PARALLEL set to mpirun -np 4 (previously undefined)
== 2018-03-16 12:55:45,844 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /home/centos/.local/easybuild/software/AmberTools/17-foss-2018a/lib:/home/centos/.local/easybuild/software/netCDF-Fortran/4.4.4-foss-2018a/lib:/home/centos/.local/easybuild/software/netCDF/4.6.0-foss-2018a/lib64:/home/centos/.local/easybuild/software/cURL/7.58.0-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/HDF5/1.10.1-foss-2018a/lib:/home/centos/.local/easybuild/software/Szip/2.1.1-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib:/home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a/lib:/home/centos/.local/easybuild/software/libffi/3.2.1-GCCcore-6.4.0/lib64:/home/centos/.local/easybuild/software/libffi/3.2.1-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/GMP/6.1.2-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/SQLite/3.21.0-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/Tcl/8.6.8-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/libreadline/7.0-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/ncurses/6.0-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/zlib/1.2.11-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/bzip2/1.0.6-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/lib:/home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/lib:/home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib:/home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/lib:/home/centos/.local/easybuild/software/hwloc/1.11.8-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/numactl/2.0.11-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/binutils/2.28-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib64:/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib (previous value: '/home/centos/.local/easybuild/software/netCDF-Fortran/4.4.4-foss-2018a/lib:/home/centos/.local/easybuild/software/netCDF/4.6.0-foss-2018a/lib64:/home/centos/.local/easybuild/software/cURL/7.58.0-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/HDF5/1.10.1-foss-2018a/lib:/home/centos/.local/easybuild/software/Szip/2.1.1-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib:/home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a/lib:/home/centos/.local/easybuild/software/libffi/3.2.1-GCCcore-6.4.0/lib64:/home/centos/.local/easybuild/software/libffi/3.2.1-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/GMP/6.1.2-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/SQLite/3.21.0-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/Tcl/8.6.8-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/libreadline/7.0-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/ncurses/6.0-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/zlib/1.2.11-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/bzip2/1.0.6-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/lib:/home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/lib:/home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib:/home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/lib:/home/centos/.local/easybuild/software/hwloc/1.11.8-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/numactl/2.0.11-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/binutils/2.28-GCCcore-6.4.0/lib:/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib64:/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib')
== 2018-03-16 12:55:45,844 run.py:163 DEBUG run_cmd: running cmd sed -i'' 's/-lnetcdf/-lnetcdf -lhdf5 -lsz -ldl -liomp5 -lcurl -lssl -lcrypto -lz -lm -lpthread/g' AmberTools/src/cpptraj/configure && ./configure -nosanderapi --no-updates -noX11 --with-netcdf /home/centos/.local/easybuild/software/netCDF/4.6.0-foss-2018a --with-netcdf-fort /home/centos/.local/easybuild/software/netCDF-Fortran/4.4.4-foss-2018a --with-python /home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a/bin/python gnu (in /home/centos/.local/easybuild/software/AmberTools/17-foss-2018a)
== 2018-03-16 12:55:45,845 run.py:183 INFO running cmd: sed -i'' 's/-lnetcdf/-lnetcdf -lhdf5 -lsz -ldl -liomp5 -lcurl -lssl -lcrypto -lz -lm -lpthread/g' AmberTools/src/cpptraj/configure && ./configure -nosanderapi --no-updates -noX11 --with-netcdf /home/centos/.local/easybuild/software/netCDF/4.6.0-foss-2018a --with-netcdf-fort /home/centos/.local/easybuild/software/netCDF-Fortran/4.4.4-foss-2018a --with-python /home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a/bin/python gnu
== 2018-03-16 12:55:45,967 build_log.py:158 ERROR EasyBuild crashed with an error (at easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/vsc/utils/exceptions.py:124 in __init__): cmd "sed -i'' 's/-lnetcdf/-lnetcdf -lhdf5 -lsz -ldl -liomp5 -lcurl -lssl -lcrypto -lz -lm -lpthread/g' AmberTools/src/cpptraj/configure && ./configure -nosanderapi --no-updates -noX11 --with-netcdf /home/centos/.local/easybuild/software/netCDF/4.6.0-foss-2018a --with-netcdf-fort /home/centos/.local/easybuild/software/netCDF-Fortran/4.4.4-foss-2018a --with-python /home/centos/.local/easybuild/software/Python/2.7.14-foss-2018a/bin/python gnu" exited with exit code 1 and output:
Skipping check for Amber updates
Error: /bin/csh not found on your system! Install csh or tcsh and rerun
configure.
Configure failed due to the errors above!
(at easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/easybuild_framework-3.5.3-py2.7.egg/easybuild/tools/run.py:481 in parse_cmd_output)
== 2018-03-16 12:55:45,967 easyblock.py:2688 WARNING build failed (first 300 chars): cmd "sed -i'' 's/-lnetcdf/-lnetcdf -lhdf5 -lsz -ldl -liomp5 -lcurl -lssl -lcrypto -lz -lm -lpthread/g' AmberTools/src/cpptraj/configure && ./configure -nosanderapi --no-updates -noX11 --with-netcdf /home/centos/.local/easybuild/software/netCDF/4.6.0-foss-2018a --with-netcdf-fort /home/centos/.local
== 2018-03-16 12:55:45,968 easyblock.py:279 INFO Closing log for application name AmberTools version 17
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