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vanzod/R-bundle-Bioconductor-3.9-foss-2019a-R-3.6.0_partial.log

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(partial) EasyBuild log for failed build of /tmp/eb-fP3wRz/files_pr8760/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.9-foss-2019a-R-3.6.0.eb (PR #8760)
Raw
R-bundle-Bioconductor-3.9-foss-2019a-R-3.6.0_partial.log
CC circle.lo
circle.c: In function 'circleLayout':
circle.c:285:5: warning: 'delx' may be used uninitialized in this function [-Wmaybe-uninitialized]
xf += delx;
~~~^~~~~~~
circle.c:268:20: note: 'delx' was declared here
double xf = 0, delx, d;
^~~~
CCLD libtwopigen_C.la
make[4]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib/twopigen'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib/twopigen'
make[3]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib/twopigen'
Making install in sfdpgen
make[3]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib/sfdpgen'
CC sfdpinit.lo
CC spring_electrical.lo
spring_electrical.c: In function 'rotate':
spring_electrical.c:1850:8: warning: variable 'y' set but not used [-Wunused-but-set-variable]
real y[4], axis[2], center[2], x0, x1;
^
CC LinkedList.lo
CC sparse_solve.lo
CC post_process.lo
post_process.c: In function 'StressMajorizationSmoother2_new':
post_process.c:110:36: warning: variable 'dd' set but not used [-Wunused-but-set-variable]
real *avg_dist, diag_d, diag_w, *dd, dist, s = 0, stop = 0, sbot = 0;
^~
post_process.c: In function 'StressMajorizationSmoother_smooth':
post_process.c:578:102: warning: variable 'res' set but not used [-Wunused-but-set-variable]
real *w, *dd, *d, *y = NULL, *x0 = NULL, *x00 = NULL, diag, diff = 1, *lambda = sm->lambda, maxit, res, alpha = 0., M = 0.;
^~~
post_process.c:578:9: warning: variable 'w' set but not used [-Wunused-but-set-variable]
real *w, *dd, *d, *y = NULL, *x0 = NULL, *x00 = NULL, diag, diff = 1, *lambda = sm->lambda, maxit, res, alpha = 0., M = 0.;
^
post_process.c:577:32: warning: variable 'jw' set but not used [-Wunused-but-set-variable]
int i, j, m, *id, *jd, *iw, *jw, idiag, flag = 0, iter = 0;
^~
post_process.c:577:27: warning: variable 'iw' set but not used [-Wunused-but-set-variable]
int i, j, m, *id, *jd, *iw, *jw, idiag, flag = 0, iter = 0;
^~
post_process.c: In function 'TriangleSmoother_new':
post_process.c:698:68: warning: variable 'jd' set but not used [-Wunused-but-set-variable]
int i, j, k, m = A->m, *ia = A->ia, *ja = A->ja, *iw, *jw, *id, *jd, jdiag, nz;
^~
post_process.c:698:63: warning: variable 'id' set but not used [-Wunused-but-set-variable]
int i, j, k, m = A->m, *ia = A->ia, *ja = A->ja, *iw, *jw, *id, *jd, jdiag, nz;
^~
CC stress_model.lo
CC uniform_stress.lo
uniform_stress.c: In function 'uniform_stress':
uniform_stress.c:112:8: warning: variable 'res' set but not used [-Wunused-but-set-variable]
real res;
^~~
CC QuadTree.lo
CC Multilevel.lo
Multilevel.c: In function 'maximal_independent_vertex_set':
Multilevel.c:87:30: warning: variable 'n' set but not used [-Wunused-but-set-variable]
int i, ii, j, *ia, *ja, m, n, *p = NULL;
^
Multilevel.c: In function 'maximal_independent_vertex_set_RS':
Multilevel.c:138:57: warning: variable 'removed' set but not used [-Wunused-but-set-variable]
int i, jj, ii, *p = NULL, j, k, *ia, *ja, m, n, gain, removed, nf = 0;
^~~~~~~
Multilevel.c:138:48: warning: variable 'n' set but not used [-Wunused-but-set-variable]
int i, jj, ii, *p = NULL, j, k, *ia, *ja, m, n, gain, removed, nf = 0;
^
Multilevel.c: In function 'maximal_independent_edge_set_heavest_edge_pernode_leaves_first':
Multilevel.c:327:30: warning: variable 'n' set but not used [-Wunused-but-set-variable]
int i, ii, j, *ia, *ja, m, n, *p = NULL, q;
^
Multilevel.c: In function 'maximal_independent_edge_set_heavest_edge_pernode_supernodes_first':
Multilevel.c:502:30: warning: variable 'n' set but not used [-Wunused-but-set-variable]
int i, ii, j, *ia, *ja, m, n, *p = NULL;
^
Multilevel.c: In function 'maximal_independent_edge_set_heavest_cluster_pernode_leaves_first':
Multilevel.c:646:30: warning: variable 'n' set but not used [-Wunused-but-set-variable]
int i, ii, j, *ia, *ja, m, n, *p = NULL, q, iv;
^
CC PriorityQueue.lo
CCLD libsfdpgen_C.la
make[4]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib/sfdpgen'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib/sfdpgen'
make[3]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib/sfdpgen'
Making install in osage
make[3]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib/osage'
CC osageinit.lo
CCLD libosage_C.la
make[4]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib/osage'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib/osage'
make[3]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib/osage'
make[3]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib'
make[4]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib'
make[3]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib'
make[2]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib'
Making install in plugin
make[2]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin'
Making install in core
make[3]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/core'
CC gvplugin_core.lo
CC gvrender_core_dot.lo
In file included from gvrender_core_dot.c:32:
gvrender_core_dot.c: In function 'xdot_str':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
(int)(*(X)->ptr++ = ((unsigned char)C)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gvrender_core_dot.c:100:5: note: in expansion of macro 'agxbputc'
agxbputc(xbufs[emit_state], ' ');
^~~~~~~~
gvrender_core_dot.c: In function 'xdot_points':
gvrender_core_dot.c:107:12: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
int i, rc;
^~
In file included from gvrender_core_dot.c:32:
gvrender_core_dot.c: In function 'xdot_style':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
(int)(*(X)->ptr++ = ((unsigned char)C)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gvrender_core_dot.c:162:13: note: in expansion of macro 'agxbputc'
agxbputc(&xbuf, '(');
^~~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
(int)(*(X)->ptr++ = ((unsigned char)C)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gvrender_core_dot.c:166:21: note: in expansion of macro 'agxbputc'
agxbputc(&xbuf, ',');
^~~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
(int)(*(X)->ptr++ = ((unsigned char)C)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gvrender_core_dot.c:172:13: note: in expansion of macro 'agxbputc'
agxbputc(&xbuf, ')');
^~~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
(int)(*(X)->ptr++ = ((unsigned char)C)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
^~~~~~~~
gvrender_core_dot.c:174:30: note: in expansion of macro 'agxbuse'
xdot_str (job, "S ", agxbuse(&xbuf));
^~~~~~~
gvrender_core_dot.c: In function 'xdot_end_node':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
(int)(*(X)->ptr++ = ((unsigned char)C)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
^~~~~~~~
gvrender_core_dot.c:186:31: note: in expansion of macro 'agxbuse'
agxset(n, xd->n_draw->index, agxbuse(xbufs[EMIT_NDRAW]));
^~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
(int)(*(X)->ptr++ = ((unsigned char)C)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
^~~~~~~~
gvrender_core_dot.c:192:33: note: in expansion of macro 'agxbuse'
agxset(n, xd->n_l_draw->index, agxbuse(xbufs[EMIT_NLABEL]));
^~~~~~~
gvrender_core_dot.c: In function 'xdot_end_edge':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
(int)(*(X)->ptr++ = ((unsigned char)C)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
^~~~~~~~
gvrender_core_dot.c:206:31: note: in expansion of macro 'agxbuse'
agxset(e, xd->e_draw->index, agxbuse(xbufs[EMIT_EDRAW]));
^~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
(int)(*(X)->ptr++ = ((unsigned char)C)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
^~~~~~~~
gvrender_core_dot.c:212:31: note: in expansion of macro 'agxbuse'
agxset(e, xd->t_draw->index, agxbuse(xbufs[EMIT_TDRAW]));
^~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
(int)(*(X)->ptr++ = ((unsigned char)C)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
^~~~~~~~
gvrender_core_dot.c:218:31: note: in expansion of macro 'agxbuse'
agxset(e, xd->h_draw->index, agxbuse(xbufs[EMIT_HDRAW]));
^~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
(int)(*(X)->ptr++ = ((unsigned char)C)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
^~~~~~~~
gvrender_core_dot.c:224:32: note: in expansion of macro 'agxbuse'
agxset(e, xd->e_l_draw->index,agxbuse(xbufs[EMIT_ELABEL]));
^~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
(int)(*(X)->ptr++ = ((unsigned char)C)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
^~~~~~~~
gvrender_core_dot.c:230:32: note: in expansion of macro 'agxbuse'
agxset(e, xd->tl_draw->index, agxbuse(xbufs[EMIT_TLABEL]));
^~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
(int)(*(X)->ptr++ = ((unsigned char)C)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
^~~~~~~~
gvrender_core_dot.c:236:32: note: in expansion of macro 'agxbuse'
agxset(e, xd->hl_draw->index, agxbuse(xbufs[EMIT_HLABEL]));
^~~~~~~
gvrender_core_dot.c: In function 'xdot_end_cluster':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
(int)(*(X)->ptr++ = ((unsigned char)C)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
^~~~~~~~
gvrender_core_dot.c:289:42: note: in expansion of macro 'agxbuse'
agxset(cluster_g, xd->g_draw->index, agxbuse(xbufs[EMIT_CDRAW]));
^~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
(int)(*(X)->ptr++ = ((unsigned char)C)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
^~~~~~~~
gvrender_core_dot.c:295:41: note: in expansion of macro 'agxbuse'
agxset(cluster_g, xd->g_l_draw->index, agxbuse(xbufs[EMIT_CLABEL]));
^~~~~~~
gvrender_core_dot.c: In function 'xdot_end_graph':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
(int)(*(X)->ptr++ = ((unsigned char)C)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
^~~~~~~~
gvrender_core_dot.c:436:31: note: in expansion of macro 'agxbuse'
agxset(g, xd->g_draw->index, agxbuse(xbufs[EMIT_GDRAW]));
^~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
(int)(*(X)->ptr++ = ((unsigned char)C)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
^~~~~~~~
gvrender_core_dot.c:444:33: note: in expansion of macro 'agxbuse'
agxset(g, xd->g_l_draw->index, agxbuse(xbufs[EMIT_GLABEL]));
^~~~~~~
CC gvrender_core_fig.lo
CC gvrender_core_map.lo
CC gvrender_core_ps.lo
CC gvrender_core_svg.lo
CC gvrender_core_tk.lo
gvrender_core_tk.c: In function 'tkgen_print_tags':
gvrender_core_tk.c:58:18: warning: variable 'ObjId' set but not used [-Wunused-but-set-variable]
unsigned int ObjId;
^~~~~
gvrender_core_tk.c:57:21: warning: variable 'ObjPart' set but not used [-Wunused-but-set-variable]
char *ObjType, *ObjPart;
^~~~~~~
CC gvrender_core_vml.lo
gvrender_core_vml.c: In function 'vml_ellipse':
gvrender_core_vml.c:452:38: warning: variable 'bottom' set but not used [-Wunused-but-set-variable]
double dx, dy, left, right, top, bottom;
^~~~~~
gvrender_core_vml.c:452:26: warning: variable 'right' set but not used [-Wunused-but-set-variable]
double dx, dy, left, right, top, bottom;
^~~~~
CC gvloadimage_core.lo
CCLD libgvplugin_core_C.la
CCLD libgvplugin_core.la
make[4]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/core'
/bin/mkdir -p '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz'
/bin/bash ../../libtool --mode=install /usr/bin/install -c libgvplugin_core.la '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz'
libtool: install: /usr/bin/install -c .libs/libgvplugin_core.lai /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_core.la
libtool: install: /usr/bin/install -c .libs/libgvplugin_core.a /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_core.a
libtool: install: chmod 644 /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_core.a
libtool: install: ranlib /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_core.a
libtool: finish: PATH="/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/netCDF/4.6.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/MariaDB-connector-c/2.3.7/bin:/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/LittleCMS/2.9/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/JasPer/2.0.14/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/Ghostscript/9.27/bin:/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/bin:/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/sbin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/bin:/opt/easybuild/software/Core/Java/11.0.2:/opt/easybuild/software/Core/Java/11.0.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/NASM/2.14.02/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tcl/8.6.9/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/GLib/2.60.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/gettext/0.19.8.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/LLVM/7.0.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/nettle/3.4.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/fontconfig/2.13.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/util-linux/2.33/sbin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/util-linux/2.33/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/freetype/2.9.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/expat/2.2.6/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/bin:/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/bin:/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/bin:/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/hwloc/1.11.11/sbin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/hwloc/1.11.11/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/numactl/2.0.12/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/binutils/2.31.1/bin:/opt/easybuild/software/Core/GCCcore/8.2.0/bin:/opt/easybuild/EB-develop/easybuild-framework:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/HEALPix/3.50/src/cxx/generic_gcc/bin:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/HEALPix/3.50/bin:/opt/Singularity/latest/bin:/opt/Go/latest/bin:/home/davide/.bin:/opt/ssh-ident:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/home/davide/.go/bin:/sbin" ldconfig -n /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz
----------------------------------------------------------------------
Libraries have been installed in:
/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,-rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/core'
make[3]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/core'
Making install in dot_layout
make[3]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/dot_layout'
CC gvplugin_dot_layout.lo
CC gvlayout_dot_layout.lo
CCLD libgvplugin_dot_layout_C.la
CCLD libgvplugin_dot_layout.la
make[4]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/dot_layout'
/bin/mkdir -p '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz'
/bin/bash ../../libtool --mode=install /usr/bin/install -c libgvplugin_dot_layout.la '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz'
libtool: install: /usr/bin/install -c .libs/libgvplugin_dot_layout.lai /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_dot_layout.la
libtool: install: /usr/bin/install -c .libs/libgvplugin_dot_layout.a /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_dot_layout.a
libtool: install: chmod 644 /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_dot_layout.a
libtool: install: ranlib /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_dot_layout.a
libtool: finish: PATH="/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/netCDF/4.6.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/MariaDB-connector-c/2.3.7/bin:/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/LittleCMS/2.9/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/JasPer/2.0.14/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/Ghostscript/9.27/bin:/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/bin:/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/sbin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/bin:/opt/easybuild/software/Core/Java/11.0.2:/opt/easybuild/software/Core/Java/11.0.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/NASM/2.14.02/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tcl/8.6.9/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/GLib/2.60.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/gettext/0.19.8.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/LLVM/7.0.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/nettle/3.4.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/fontconfig/2.13.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/util-linux/2.33/sbin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/util-linux/2.33/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/freetype/2.9.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/expat/2.2.6/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/bin:/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/bin:/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/bin:/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/hwloc/1.11.11/sbin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/hwloc/1.11.11/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/numactl/2.0.12/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/binutils/2.31.1/bin:/opt/easybuild/software/Core/GCCcore/8.2.0/bin:/opt/easybuild/EB-develop/easybuild-framework:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/HEALPix/3.50/src/cxx/generic_gcc/bin:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/HEALPix/3.50/bin:/opt/Singularity/latest/bin:/opt/Go/latest/bin:/home/davide/.bin:/opt/ssh-ident:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/home/davide/.go/bin:/sbin" ldconfig -n /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz
----------------------------------------------------------------------
Libraries have been installed in:
/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,-rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/dot_layout'
make[3]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/dot_layout'
Making install in neato_layout
make[3]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/neato_layout'
CC gvplugin_neato_layout.lo
CC gvlayout_neato_layout.lo
CCLD libgvplugin_neato_layout_C.la
CCLD libgvplugin_neato_layout.la
make[4]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/neato_layout'
/bin/mkdir -p '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz'
/bin/bash ../../libtool --mode=install /usr/bin/install -c libgvplugin_neato_layout.la '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz'
libtool: install: /usr/bin/install -c .libs/libgvplugin_neato_layout.lai /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_neato_layout.la
libtool: install: /usr/bin/install -c .libs/libgvplugin_neato_layout.a /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_neato_layout.a
libtool: install: chmod 644 /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_neato_layout.a
libtool: install: ranlib /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_neato_layout.a
libtool: finish: PATH="/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/netCDF/4.6.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/MariaDB-connector-c/2.3.7/bin:/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/LittleCMS/2.9/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/JasPer/2.0.14/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/Ghostscript/9.27/bin:/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/bin:/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/sbin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/bin:/opt/easybuild/software/Core/Java/11.0.2:/opt/easybuild/software/Core/Java/11.0.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/NASM/2.14.02/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tcl/8.6.9/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/GLib/2.60.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/gettext/0.19.8.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/LLVM/7.0.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/nettle/3.4.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/fontconfig/2.13.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/util-linux/2.33/sbin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/util-linux/2.33/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/freetype/2.9.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/expat/2.2.6/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/bin:/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/bin:/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/bin:/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/hwloc/1.11.11/sbin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/hwloc/1.11.11/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/numactl/2.0.12/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/binutils/2.31.1/bin:/opt/easybuild/software/Core/GCCcore/8.2.0/bin:/opt/easybuild/EB-develop/easybuild-framework:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/HEALPix/3.50/src/cxx/generic_gcc/bin:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/HEALPix/3.50/bin:/opt/Singularity/latest/bin:/opt/Go/latest/bin:/home/davide/.bin:/opt/ssh-ident:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/home/davide/.go/bin:/sbin" ldconfig -n /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz
----------------------------------------------------------------------
Libraries have been installed in:
/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,-rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/neato_layout'
make[3]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/neato_layout'
make[3]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin'
make[4]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin'
make[3]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin'
make[2]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin'
make[2]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz'
make[3]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz'
make[3]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/share/man/man7'
/usr/bin/install -c -m 644 graphviz.7 '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/share/man/man7'
/bin/mkdir -p '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz'
/usr/bin/install -c -m 644 graphviz_version.h '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz'
/bin/mkdir -p '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/share/graphviz/doc'
/usr/bin/install -c -m 644 AUTHORS COPYING ChangeLog NEWS cpl1.0.txt '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/share/graphviz/doc'
make[3]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz'
make[2]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz'
make[1]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz'
cp: -r not specified; omitting directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz'
cp: -r not specified; omitting directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/pkgconfig'
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for deflateBound in -lz... yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for whether compiler has bool... yes
configure: Using the following compilation and linking flags for Rgraphviz
configure: PKG_CFLAGS= -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz
configure: PKG_LIBS=libxdot.a libgvplugin_dot_layout.a libgvplugin_neato_layout.a libgvplugin_core.a libgvc.a libpathplan.a libgraph.a libcdt.a -lz
configure: GVIZ_DEFS=-DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1
configure: Compiling using Graphviz version: '2.28.0'.
configure: Using bundled Graphviz: 'TRUE'.
configure: creating ./config.status
config.status: creating R/graphviz_build_version.R
config.status: creating src/Makevars
** libs
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c LL_funcs.c -o LL_funcs.o
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c Rgraphviz.c -o Rgraphviz.o
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c RgraphvizInit.c -o RgraphvizInit.o
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c agopen.c -o agopen.o
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c agread.c -o agread.o
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c agwrite.c -o agwrite.o
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c bezier.c -o bezier.o
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c buildEdgeList.c -o buildEdgeList.o
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c buildNodeList.c -o buildNodeList.o
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c doLayout.c -o doLayout.o
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c graphvizVersion.c -o graphvizVersion.o
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c init.c -o init.o
gcc -shared -L/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/lib -L/opt/easybuild/software/Core/GCCcore/8.2.0/lib64 -L/opt/easybuild/software/Core/GCCcore/8.2.0/lib -L/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/lib -L/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/lib -L/opt/easybuild/software/Core/Java/11.0.2/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/lib -L/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/lib -L/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/lib -L/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/lib -o Rgraphviz.so LL_funcs.o Rgraphviz.o RgraphvizInit.o agopen.o agread.o agwrite.o bezier.o buildEdgeList.o buildNodeList.o doLayout.o graphvizVersion.o init.o libxdot.a libgvplugin_dot_layout.a libgvplugin_neato_layout.a libgvplugin_core.a libgvc.a libpathplan.a libgraph.a libcdt.a -lz -L/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/lib -lR
installing to /opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R-bundle-Bioconductor/3.9-R-3.6.0/00LOCK-Rgraphviz/00new/Rgraphviz/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘Rgraphviz’:
.onLoad failed in loadNamespace() for 'Rgraphviz', details:
call: value[[3L]](cond)
error: unable to load shared object '/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R-bundle-Bioconductor/3.9-R-3.6.0/00LOCK-Rgraphviz/00new/Rgraphviz/libs/Rgraphviz.so':
/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R-bundle-Bioconductor/3.9-R-3.6.0/00LOCK-Rgraphviz/00new/Rgraphviz/libs/Rgraphviz.so: undefined symbol: _ZGVbN2vv___pow_finite
Rgraphviz is unable to be loaded. This typically is a symptom of an
installation problem. From 2.x.x onwards, Graphviz ought to come
bundled with Rgraphviz.
If you are trying to use an external Graphviz, see additional
instructions in the 'README' file of the Rgraphviz 'source'
distribution, available at
http://bioconductor.org/packages/release/bioc/html/Rgraphviz.html
Ask further questions on the Bioconductor mailing list
http://bioconductor.org/docs/mailList.html
Rgraphviz is unable to be loaded. This typically is a symptom of an
installation problem. From 2.x.x onwards, Graphviz ought to come
bundled with Rgraphviz.
If you are trying to use an external Graphviz, see additional
instructions in the 'README' file of the Rgraphviz 'source'
distribution, available at
http://bioconductor.org/packages/release/bioc/html/Rgraphviz.html
Ask further questions on the Bioconductor mailing list
http://bioconductor.org/docs/mailList.html
Error: loading failed
Execution halted
ERROR: loading failed
(at easybuild/EB-develop/easybuild-framework/easybuild/tools/run.py:501 in parse_cmd_output)
== 2019-08-15 14:16:40,968 easyblock.py:3053 WARNING build failed (first 300 chars): cmd " R CMD INSTALL /opt/easybuild/sources/r/R-bundle-Bioconductor/extensions/Rgraphviz_2.28.0.tar.gz --library=/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R-bundle-Bioconductor/3.9-R-3.6.0/ --no-clean-on-error " exited with exit code 1 and output:
* installing *source* package ‘R
== 2019-08-15 14:16:40,969 easyblock.py:295 INFO Closing log for application name R-bundle-Bioconductor version 3.9
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