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May 20, 2015 16:12
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(partial) EasyBuild log for failed build of /node_scratch/20158633.icts-p-svcs-1/eb-aPS0Ai/files_pr1346/M4-1.4.17-GNU-4.9.2-2.25.eb (PR #1346)
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| == 2015-05-20 18:11:24,190 main.ConfigureMake INFO This is EasyBuild 2.1.1 (framework: 2.1.1, easyblocks: 2.1.1) on host r5i2n3. | |
| == 2015-05-20 18:11:24,190 main.ConfigureMake INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/lib/python2.6/site-packages/easybuild_easyblocks-2.1.1-py2.6.egg/easybuild/easyblocks/generic/configuremake.pyc) | |
| == 2015-05-20 18:11:24,191 main.ConfigureMake INFO Build dir set to /node_scratch/20158633.icts-p-svcs-1/build/M4/1.4.17/GNU-4.9.2-2.25 | |
| == 2015-05-20 18:11:24,191 main.config DEBUG software install path as specified by 'installpath' and 'subdir_software': /node_scratch/20158633.icts-p-svcs-1/software | |
| == 2015-05-20 18:11:24,191 main.ActiveMNS DEBUG Determining software installation subdir for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1437d10> | |
| == 2015-05-20 18:11:24,191 main.ActiveMNS DEBUG Obtained subdir M4/1.4.17-GNU-4.9.2-2.25 | |
| == 2015-05-20 18:11:24,192 main.ConfigureMake INFO Install dir set to /node_scratch/20158633.icts-p-svcs-1/software/M4/1.4.17-GNU-4.9.2-2.25 | |
| == 2015-05-20 18:11:24,192 main.ConfigureMake INFO Init completed for application name M4 version 1.4.17 | |
| == 2015-05-20 18:11:24,192 main.easyblock INFO Obtained application instance of for M4 (easyblock: ConfigureMake) | |
| == 2015-05-20 18:11:24,192 main.easyblock DEBUG Skip set to False | |
| == 2015-05-20 18:11:24,192 main.ConfigureMake INFO building and installing M4/1.4.17-GNU-4.9.2-2.25... | |
| == 2015-05-20 18:11:24,192 main.ConfigureMake DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2015-05-20 18:11:24,193 main.ConfigureMake INFO fetching files... | |
| == 2015-05-20 18:11:24,193 main.ConfigureMake INFO Starting fetch step | |
| == 2015-05-20 18:11:24,193 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'postinstallcmds': [[], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['%(namelower)s-%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'prebuildopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['1.4.17', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://www.gnu.org/software/m4/m4.html', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible\n although it has some extensions (for example, handling more than 9 positional parameters to macros).\n GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['devel', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'parallel': [None, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/m4'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['M4', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'toolchain': [{'version': '4.9.2-2.25', 'name': 'GNU'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'source_urls': [['http://ftpmirror.gnu.org/%(namelower)s'], 'List of URLs for source files', (3, 'build')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['--enable-cxx', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]} | |
| == 2015-05-20 18:11:24,195 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:24,195 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:24,195 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:24,195 main.easyconfig.templates DEBUG name: name, config: M4 | |
| == 2015-05-20 18:11:24,195 main.easyconfig.templates DEBUG name: version, config: 1.4.17 | |
| == 2015-05-20 18:11:24,195 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2015-05-20 18:11:24,196 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2015-05-20 18:11:24,196 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'postinstallcmds': [[], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['%(namelower)s-%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'prebuildopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['1.4.17', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://www.gnu.org/software/m4/m4.html', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible\n although it has some extensions (for example, handling more than 9 positional parameters to macros).\n GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['devel', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'parallel': [None, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/m4'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['M4', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'toolchain': [{'version': '4.9.2-2.25', 'name': 'GNU'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'source_urls': [['http://ftpmirror.gnu.org/%(namelower)s'], 'List of URLs for source files', (3, 'build')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['--enable-cxx', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]} | |
| == 2015-05-20 18:11:24,197 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:24,198 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:24,198 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:24,198 main.easyconfig.templates DEBUG name: name, config: M4 | |
| == 2015-05-20 18:11:24,198 main.easyconfig.templates DEBUG name: version, config: 1.4.17 | |
| == 2015-05-20 18:11:24,198 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2015-05-20 18:11:24,198 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2015-05-20 18:11:24,198 main.ConfigureMake INFO Running method fetch_step part of step fetch | |
| == 2015-05-20 18:11:24,199 main.ConfigureMake WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2015-05-20 18:11:24,199 main.filetools INFO Command eb found at /node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/bin/eb | |
| == 2015-05-20 18:11:24,199 main.easyconfig.tools DEBUG Also considering installation prefix /node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1... | |
| == 2015-05-20 18:11:24,199 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /node_scratch/20158633.icts-p-svcs-1/eb-aPS0Ai/files_pr1346/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,199 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/lib/python2.6/site-packages/easybuild_easyconfigs-2.1.1-py2.6.egg/easybuild/easyconfigs/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,199 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /local_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/lib/python2.6/site-packages/easybuild_framework-2.1.1-py2.6.egg/easybuild/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,200 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/lib/python2.6/site-packages/vsc_base-2.2.2-py2.6.egg/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,200 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/lib/python2.6/site-packages/easybuild_framework-2.1.1-py2.6.egg/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,200 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/lib/python2.6/site-packages/easybuild_easyblocks-2.1.1-py2.6.egg/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,200 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/lib/python2.6/site-packages/easybuild_easyconfigs-2.1.1-py2.6.egg/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,200 main.easyconfig.tools DEBUG Added /node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/lib/python2.6/site-packages/easybuild_easyconfigs-2.1.1-py2.6.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,200 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/lib/python2.6/site-packages/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,200 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /JUBE/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,201 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/keyring/lib/python2.6/site-packages/keyring-3.8/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,201 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /scratch/leuven/400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,201 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /scratch/leuven/400/vsc40023/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,201 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/lib/python2.6/site-packages/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,201 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/lib/python2.6/site-packages/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,202 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,202 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python26.zip/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,202 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.6/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,202 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.6/plat-linux2/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,202 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.6/lib-tk/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,202 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.6/lib-old/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,202 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.6/lib-dynload/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,203 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.6/site-packages/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,203 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.6/site-packages/gtk-2.0/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,203 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.6/site-packages/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,203 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.6/site-packages/setuptools-0.6c11-py2.6.egg-info/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,203 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /JUBE/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,203 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /scratch/leuven/400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,204 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /scratch/leuven/400/vsc40023/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,204 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/lib/python2.6/site-packages/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,204 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/lib/python2.6/site-packages/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,204 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,204 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at ../easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,205 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib/graphviz/python/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,205 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/graphviz/python/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,205 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/easybuild/easyconfigs | |
| == 2015-05-20 18:11:24,205 main.filetools INFO Creating directory /node_scratch/20158633.icts-p-svcs-1/sources/m/M4 (parents: True, set_gid: False, sticky: False) | |
| == 2015-05-20 18:11:24,206 main.ConfigureMake DEBUG Trying to download file m4-1.4.17.tar.gz from http://ftpmirror.gnu.org/m4/m4-1.4.17.tar.gz to /node_scratch/20158633.icts-p-svcs-1/sources/m/M4/m4-1.4.17.tar.gz ... | |
| == 2015-05-20 18:11:24,206 main.filetools DEBUG Trying to download m4-1.4.17.tar.gz from http://ftpmirror.gnu.org/m4/m4-1.4.17.tar.gz to /node_scratch/20158633.icts-p-svcs-1/sources/m/M4/m4-1.4.17.tar.gz | |
| == 2015-05-20 18:11:24,206 main.filetools DEBUG Using timeout of 10 seconds for initiating download | |
| == 2015-05-20 18:11:24,206 main.filetools DEBUG Not creating existing path /node_scratch/20158633.icts-p-svcs-1/sources/m/M4 | |
| == 2015-05-20 18:11:24,496 main.filetools DEBUG response code for given url http://ftpmirror.gnu.org/m4/m4-1.4.17.tar.gz: 200 | |
| == 2015-05-20 18:11:24,692 main.filetools DEBUG Not creating existing path /node_scratch/20158633.icts-p-svcs-1/sources/m/M4 | |
| == 2015-05-20 18:11:24,694 main.filetools INFO Downloaded file m4-1.4.17.tar.gz from url http://ftpmirror.gnu.org/m4/m4-1.4.17.tar.gz to /node_scratch/20158633.icts-p-svcs-1/sources/m/M4/m4-1.4.17.tar.gz | |
| == 2015-05-20 18:11:24,695 main.filetools INFO Successful download of file m4-1.4.17.tar.gz from url http://ftpmirror.gnu.org/m4/m4-1.4.17.tar.gz to path /node_scratch/20158633.icts-p-svcs-1/sources/m/M4/m4-1.4.17.tar.gz | |
| == 2015-05-20 18:11:24,695 main.ConfigureMake INFO Successfully downloaded source file m4-1.4.17.tar.gz from http://ftpmirror.gnu.org/m4/m4-1.4.17.tar.gz | |
| == 2015-05-20 18:11:24,695 main.ConfigureMake DEBUG File /node_scratch/20158633.icts-p-svcs-1/sources/m/M4/m4-1.4.17.tar.gz found for source m4-1.4.17.tar.gz | |
| == 2015-05-20 18:11:24,696 main.ConfigureMake INFO Added sources: [{'path': '/node_scratch/20158633.icts-p-svcs-1/sources/m/M4/m4-1.4.17.tar.gz', 'cmd': None, 'finalpath': '/node_scratch/20158633.icts-p-svcs-1/build/M4/1.4.17/GNU-4.9.2-2.25', 'name': 'm4-1.4.17.tar.gz', 'checksum': None}] | |
| == 2015-05-20 18:11:24,696 main.ConfigureMake INFO no patches provided | |
| == 2015-05-20 18:11:24,696 main.filetools DEBUG Using blocksize 16777216 for calculating the checksum | |
| == 2015-05-20 18:11:24,704 main.ConfigureMake INFO md5 checksum for /node_scratch/20158633.icts-p-svcs-1/sources/m/M4/m4-1.4.17.tar.gz: a5e9954b1dae036762f7b13673a2cf76 | |
| == 2015-05-20 18:11:24,706 main.affinity DEBUG sched_getaffinity for pid 1602 returned cpuset 0-23 | |
| == 2015-05-20 18:11:24,706 main.run DEBUG run_cmd: running cmd ulimit -u (in /local_scratch/20158633.icts-p-svcs-1) | |
| == 2015-05-20 18:11:24,733 main.run DEBUG cmd "ulimit -u" exited with exitcode 0 and output: | |
| 514255 | |
| == 2015-05-20 18:11:24,738 main.run DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
| == 2015-05-20 18:11:24,738 main.ConfigureMake INFO Setting parallelism: 24 | |
| == 2015-05-20 18:11:24,739 main.config DEBUG software install path as specified by 'installpath' and 'subdir_software': /node_scratch/20158633.icts-p-svcs-1/software | |
| == 2015-05-20 18:11:24,739 main.config DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /node_scratch/20158633.icts-p-svcs-1/modules | |
| == 2015-05-20 18:11:24,739 main.config DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /node_scratch/20158633.icts-p-svcs-1/modules | |
| == 2015-05-20 18:11:24,740 main.ConfigureMake INFO Checking dirs that need to be created: ['/node_scratch/20158633.icts-p-svcs-1/software/M4', '/node_scratch/20158633.icts-p-svcs-1/modules/all/M4', '/node_scratch/20158633.icts-p-svcs-1/modules/devel/M4'] | |
| == 2015-05-20 18:11:24,740 main.filetools INFO Creating directory /node_scratch/20158633.icts-p-svcs-1/software/M4 (parents: True, set_gid: False, sticky: False) | |
| == 2015-05-20 18:11:24,741 main.filetools INFO Creating directory /node_scratch/20158633.icts-p-svcs-1/modules/all/M4 (parents: True, set_gid: False, sticky: False) | |
| == 2015-05-20 18:11:24,741 main.filetools INFO Creating directory /node_scratch/20158633.icts-p-svcs-1/modules/devel/M4 (parents: True, set_gid: False, sticky: False) | |
| == 2015-05-20 18:11:24,741 main.ConfigureMake DEBUG Not skipping ready step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2015-05-20 18:11:24,742 main.ConfigureMake INFO creating build dir, resetting environment... | |
| == 2015-05-20 18:11:24,742 main.ConfigureMake INFO Starting ready step | |
| == 2015-05-20 18:11:24,744 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'postinstallcmds': [[], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['%(namelower)s-%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'prebuildopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['1.4.17', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://www.gnu.org/software/m4/m4.html', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible\n although it has some extensions (for example, handling more than 9 positional parameters to macros).\n GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['devel', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'parallel': [24, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/m4'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['M4', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'toolchain': [{'version': '4.9.2-2.25', 'name': 'GNU'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'source_urls': [['http://ftpmirror.gnu.org/%(namelower)s'], 'List of URLs for source files', (3, 'build')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['--enable-cxx', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]} | |
| == 2015-05-20 18:11:24,745 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:24,745 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:24,745 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:24,746 main.easyconfig.templates DEBUG name: name, config: M4 | |
| == 2015-05-20 18:11:24,746 main.easyconfig.templates DEBUG name: version, config: 1.4.17 | |
| == 2015-05-20 18:11:24,746 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2015-05-20 18:11:24,746 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2015-05-20 18:11:24,747 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'postinstallcmds': [[], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['%(namelower)s-%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'prebuildopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['1.4.17', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://www.gnu.org/software/m4/m4.html', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible\n although it has some extensions (for example, handling more than 9 positional parameters to macros).\n GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['devel', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'parallel': [24, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/m4'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['M4', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'toolchain': [{'version': '4.9.2-2.25', 'name': 'GNU'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'source_urls': [['http://ftpmirror.gnu.org/%(namelower)s'], 'List of URLs for source files', (3, 'build')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['--enable-cxx', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]} | |
| == 2015-05-20 18:11:24,748 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:24,748 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:24,748 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:24,748 main.easyconfig.templates DEBUG name: name, config: M4 | |
| == 2015-05-20 18:11:24,749 main.easyconfig.templates DEBUG name: version, config: 1.4.17 | |
| == 2015-05-20 18:11:24,749 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2015-05-20 18:11:24,749 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2015-05-20 18:11:24,749 main.ConfigureMake INFO Running method check_readiness_step part of step ready | |
| == 2015-05-20 18:11:24,749 main.EnvironmentModulesC DEBUG Current MODULEPATH: /node_scratch/20158633.icts-p-svcs-1/modules/all:/etc/modulefiles/vsc:/scratch/leuven/400/vsc40023/easybuild_REGTEST//haswell/modules/all | |
| == 2015-05-20 18:11:24,749 main.EnvironmentModulesC DEBUG Changing LD_LIBRARY_PATH from '/node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/lib' to '/node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/lib' in environment for module command | |
| == 2015-05-20 18:11:24,750 main.EnvironmentModulesC DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
| == 2015-05-20 18:11:24,750 main.EnvironmentModulesC DEBUG Running module command '/usr/bin/modulecmd python --terse list' from /local_scratch/20158633.icts-p-svcs-1 | |
| == 2015-05-20 18:11:24,772 main.EnvironmentModulesC DEBUG Output of module command '/usr/bin/modulecmd python --terse list': stdout: ; stderr: Currently Loaded Modulefiles: | |
| EasyBuild/2.1.1 | |
| == 2015-05-20 18:11:24,773 main.EnvironmentModulesC DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/lib'] to ['/node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/lib'] | |
| == 2015-05-20 18:11:24,773 main.EnvironmentModulesC DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
| == 2015-05-20 18:11:24,774 main.ConfigureMake WARNING Loaded modules detected: ['EasyBuild/2.1.1'] | |
| == 2015-05-20 18:11:24,774 main.main.main.GNU DEBUG add_dependencies: adding toolchain dependencies [] | |
| == 2015-05-20 18:11:24,775 main.main.main.EnvironmentModulesC DEBUG Current MODULEPATH: /node_scratch/20158633.icts-p-svcs-1/modules/all:/etc/modulefiles/vsc:/scratch/leuven/400/vsc40023/easybuild_REGTEST//haswell/modules/all | |
| == 2015-05-20 18:11:24,775 main.main.main.EnvironmentModulesC DEBUG Changing LD_LIBRARY_PATH from '/node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/lib' to '/node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/lib' in environment for module command | |
| == 2015-05-20 18:11:24,775 main.main.main.EnvironmentModulesC DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
| == 2015-05-20 18:11:24,776 main.main.main.EnvironmentModulesC DEBUG Running module command '/usr/bin/modulecmd python --terse avail ' from /local_scratch/20158633.icts-p-svcs-1 | |
| == 2015-05-20 18:11:24,791 main.main.main.EnvironmentModulesC DEBUG Output of module command '/usr/bin/modulecmd python --terse avail ': stdout: ; stderr: /node_scratch/20158633.icts-p-svcs-1/modules/all: | |
| binutils/2.25 | |
| EasyBuild/2.1.1 | |
| GCC/4.9.2-binutils-2.25 | |
| zlib/1.2.8 | |
| /scratch/leuven/400/vsc40023/easybuild_REGTEST//haswell/modules/all: | |
| == 2015-05-20 18:11:24,792 main.main.main.EnvironmentModulesC DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/lib'] to ['/node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/lib'] | |
| == 2015-05-20 18:11:24,792 main.main.main.EnvironmentModulesC DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
| == 2015-05-20 18:11:24,793 main.main.main.EnvironmentModulesC DEBUG 'module available ' gave 4 answers: ['EasyBuild/2.1.1', 'GCC/4.9.2-binutils-2.25', 'binutils/2.25', 'zlib/1.2.8'] | |
| == 2015-05-20 18:11:24,793 main.ConfigureMake INFO Running method make_builddir part of step ready | |
| == 2015-05-20 18:11:24,794 main.ConfigureMake DEBUG Creating the build directory /node_scratch/20158633.icts-p-svcs-1/build/M4/1.4.17/GNU-4.9.2-2.25 (cleanup: True) | |
| == 2015-05-20 18:11:24,794 main.filetools INFO Creating directory /node_scratch/20158633.icts-p-svcs-1/build/M4/1.4.17/GNU-4.9.2-2.25 (parents: True, set_gid: False, sticky: False) | |
| == 2015-05-20 18:11:24,795 main.ConfigureMake INFO Running method env_reset_changes part of step ready | |
| == 2015-05-20 18:11:24,795 main.ConfigureMake INFO Running method handle_iterate_opts part of step ready | |
| == 2015-05-20 18:11:24,795 main.ConfigureMake DEBUG Not skipping source step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2015-05-20 18:11:24,796 main.ConfigureMake INFO unpacking... | |
| == 2015-05-20 18:11:24,796 main.ConfigureMake INFO Starting source step | |
| == 2015-05-20 18:11:24,798 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'postinstallcmds': [[], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['%(namelower)s-%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'prebuildopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['1.4.17', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://www.gnu.org/software/m4/m4.html', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible\n although it has some extensions (for example, handling more than 9 positional parameters to macros).\n GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['devel', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'parallel': [24, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/m4'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['M4', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'toolchain': [{'version': '4.9.2-2.25', 'name': 'GNU'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'source_urls': [['http://ftpmirror.gnu.org/%(namelower)s'], 'List of URLs for source files', (3, 'build')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['--enable-cxx', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]} | |
| == 2015-05-20 18:11:24,800 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:24,800 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:24,801 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:24,801 main.easyconfig.templates DEBUG name: name, config: M4 | |
| == 2015-05-20 18:11:24,801 main.easyconfig.templates DEBUG name: version, config: 1.4.17 | |
| == 2015-05-20 18:11:24,802 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2015-05-20 18:11:24,802 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2015-05-20 18:11:24,803 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'postinstallcmds': [[], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['%(namelower)s-%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'prebuildopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['1.4.17', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://www.gnu.org/software/m4/m4.html', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible\n although it has some extensions (for example, handling more than 9 positional parameters to macros).\n GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['devel', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'parallel': [24, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/m4'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['M4', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'toolchain': [{'version': '4.9.2-2.25', 'name': 'GNU'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'source_urls': [['http://ftpmirror.gnu.org/%(namelower)s'], 'List of URLs for source files', (3, 'build')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['--enable-cxx', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]} | |
| == 2015-05-20 18:11:24,805 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:24,805 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:24,806 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:24,806 main.easyconfig.templates DEBUG name: name, config: M4 | |
| == 2015-05-20 18:11:24,806 main.easyconfig.templates DEBUG name: version, config: 1.4.17 | |
| == 2015-05-20 18:11:24,806 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2015-05-20 18:11:24,806 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2015-05-20 18:11:24,806 main.ConfigureMake INFO Running method checksum_step part of step source | |
| == 2015-05-20 18:11:24,807 main.ConfigureMake INFO Checksum verification for /node_scratch/20158633.icts-p-svcs-1/sources/m/M4/m4-1.4.17.tar.gz using None passed. | |
| == 2015-05-20 18:11:24,807 main.ConfigureMake INFO Running method extract_step part of step source | |
| == 2015-05-20 18:11:24,807 main.ConfigureMake INFO Unpacking source m4-1.4.17.tar.gz | |
| == 2015-05-20 18:11:24,807 main.filetools DEBUG Not creating existing path /node_scratch/20158633.icts-p-svcs-1/build/M4/1.4.17/GNU-4.9.2-2.25 | |
| == 2015-05-20 18:11:24,807 main.filetools DEBUG Unpacking /node_scratch/20158633.icts-p-svcs-1/sources/m/M4/m4-1.4.17.tar.gz in directory /node_scratch/20158633.icts-p-svcs-1/build/M4/1.4.17/GNU-4.9.2-2.25. | |
| == 2015-05-20 18:11:24,808 main.run DEBUG run_cmd: running cmd tar xzf /node_scratch/20158633.icts-p-svcs-1/sources/m/M4/m4-1.4.17.tar.gz (in /local_scratch/20158633.icts-p-svcs-1/build/M4/1.4.17/GNU-4.9.2-2.25) | |
| == 2015-05-20 18:11:25,074 main.run DEBUG cmd "tar xzf /node_scratch/20158633.icts-p-svcs-1/sources/m/M4/m4-1.4.17.tar.gz" exited with exitcode 0 and output: | |
| == 2015-05-20 18:11:25,074 main.run DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
| == 2015-05-20 18:11:25,075 main.filetools DEBUG Last dir list ['.tarball-version', '.prev-version', '.version', 'aclocal.m4', 'checks', 'TODO', 'Makefile.in', 'c-boxes.el', 'COPYING', 'INSTALL', 'GNUmakefile', 'src', 'bootstrap', 'acinclude.m4', 'Makefile.am', 'BACKLOG', 'README', 'm4', 'NEWS', 'doc', 'configure', 'AUTHORS', 'lib', 'examples', 'maint.mk', 'tests', 'ChangeLog', 'build-aux', 'THANKS', 'cfg.mk', 'configure.ac'] | |
| == 2015-05-20 18:11:25,075 main.filetools DEBUG Possible new dir /local_scratch/20158633.icts-p-svcs-1/build/M4/1.4.17/GNU-4.9.2-2.25/m4-1.4.17 found | |
| == 2015-05-20 18:11:25,076 main.ConfigureMake DEBUG Not skipping patch step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2015-05-20 18:11:25,076 main.ConfigureMake INFO patching... | |
| == 2015-05-20 18:11:25,076 main.ConfigureMake INFO Starting patch step | |
| == 2015-05-20 18:11:25,078 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'postinstallcmds': [[], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['%(namelower)s-%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'prebuildopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['1.4.17', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://www.gnu.org/software/m4/m4.html', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible\n although it has some extensions (for example, handling more than 9 positional parameters to macros).\n GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['devel', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'parallel': [24, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/m4'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['M4', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'toolchain': [{'version': '4.9.2-2.25', 'name': 'GNU'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'source_urls': [['http://ftpmirror.gnu.org/%(namelower)s'], 'List of URLs for source files', (3, 'build')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['--enable-cxx', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]} | |
| == 2015-05-20 18:11:25,080 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:25,081 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:25,081 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:25,081 main.easyconfig.templates DEBUG name: name, config: M4 | |
| == 2015-05-20 18:11:25,082 main.easyconfig.templates DEBUG name: version, config: 1.4.17 | |
| == 2015-05-20 18:11:25,082 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2015-05-20 18:11:25,082 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2015-05-20 18:11:25,084 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'postinstallcmds': [[], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['%(namelower)s-%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'prebuildopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['1.4.17', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://www.gnu.org/software/m4/m4.html', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible\n although it has some extensions (for example, handling more than 9 positional parameters to macros).\n GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['devel', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'parallel': [24, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/m4'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['M4', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'toolchain': [{'version': '4.9.2-2.25', 'name': 'GNU'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'source_urls': [['http://ftpmirror.gnu.org/%(namelower)s'], 'List of URLs for source files', (3, 'build')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['--enable-cxx', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]} | |
| == 2015-05-20 18:11:25,085 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:25,085 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:25,085 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:25,086 main.easyconfig.templates DEBUG name: name, config: M4 | |
| == 2015-05-20 18:11:25,086 main.easyconfig.templates DEBUG name: version, config: 1.4.17 | |
| == 2015-05-20 18:11:25,086 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2015-05-20 18:11:25,086 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2015-05-20 18:11:25,086 main.ConfigureMake INFO Running method patch_step part of step patch | |
| == 2015-05-20 18:11:25,087 main.ConfigureMake DEBUG Not skipping prepare step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2015-05-20 18:11:25,087 main.ConfigureMake INFO preparing... | |
| == 2015-05-20 18:11:25,087 main.ConfigureMake INFO Starting prepare step | |
| == 2015-05-20 18:11:25,088 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'postinstallcmds': [[], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['%(namelower)s-%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'prebuildopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['1.4.17', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://www.gnu.org/software/m4/m4.html', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible\n although it has some extensions (for example, handling more than 9 positional parameters to macros).\n GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['devel', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'parallel': [24, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/m4'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['M4', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'toolchain': [{'version': '4.9.2-2.25', 'name': 'GNU'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'source_urls': [['http://ftpmirror.gnu.org/%(namelower)s'], 'List of URLs for source files', (3, 'build')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['--enable-cxx', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]} | |
| == 2015-05-20 18:11:25,089 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:25,089 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:25,089 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:25,089 main.easyconfig.templates DEBUG name: name, config: M4 | |
| == 2015-05-20 18:11:25,090 main.easyconfig.templates DEBUG name: version, config: 1.4.17 | |
| == 2015-05-20 18:11:25,090 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2015-05-20 18:11:25,090 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2015-05-20 18:11:25,091 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'postinstallcmds': [[], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['%(namelower)s-%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'prebuildopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['1.4.17', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://www.gnu.org/software/m4/m4.html', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible\n although it has some extensions (for example, handling more than 9 positional parameters to macros).\n GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['devel', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'parallel': [24, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/m4'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['M4', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'toolchain': [{'version': '4.9.2-2.25', 'name': 'GNU'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'source_urls': [['http://ftpmirror.gnu.org/%(namelower)s'], 'List of URLs for source files', (3, 'build')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['--enable-cxx', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]} | |
| == 2015-05-20 18:11:25,092 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:25,092 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:25,092 main.easyconfig.templates DEBUG version found in easyconfig is 1.4.17 | |
| == 2015-05-20 18:11:25,092 main.easyconfig.templates DEBUG name: name, config: M4 | |
| == 2015-05-20 18:11:25,093 main.easyconfig.templates DEBUG name: version, config: 1.4.17 | |
| == 2015-05-20 18:11:25,093 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2015-05-20 18:11:25,093 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2015-05-20 18:11:25,093 main.ConfigureMake INFO Running method prepare_step part of step prepare | |
| == 2015-05-20 18:11:25,093 main.main.main.EnvironmentModulesC DEBUG Current MODULEPATH: /node_scratch/20158633.icts-p-svcs-1/modules/all:/etc/modulefiles/vsc:/scratch/leuven/400/vsc40023/easybuild_REGTEST//haswell/modules/all | |
| == 2015-05-20 18:11:25,094 main.main.main.EnvironmentModulesC DEBUG Changing LD_LIBRARY_PATH from '/node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/lib' to '/node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/lib' in environment for module command | |
| == 2015-05-20 18:11:25,094 main.main.main.EnvironmentModulesC DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
| == 2015-05-20 18:11:25,094 main.main.main.EnvironmentModulesC DEBUG Running module command '/usr/bin/modulecmd python --terse avail ' from /local_scratch/20158633.icts-p-svcs-1/build/M4/1.4.17/GNU-4.9.2-2.25/m4-1.4.17 | |
| == 2015-05-20 18:11:25,121 main.main.main.EnvironmentModulesC DEBUG Output of module command '/usr/bin/modulecmd python --terse avail ': stdout: ; stderr: /node_scratch/20158633.icts-p-svcs-1/modules/all: | |
| binutils/2.25 | |
| EasyBuild/2.1.1 | |
| GCC/4.9.2-binutils-2.25 | |
| zlib/1.2.8 | |
| /scratch/leuven/400/vsc40023/easybuild_REGTEST//haswell/modules/all: | |
| == 2015-05-20 18:11:25,122 main.main.main.EnvironmentModulesC DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/lib'] to ['/node_scratch/20158633.icts-p-svcs-1/software/EasyBuild/2.1.1/lib'] | |
| == 2015-05-20 18:11:25,122 main.main.main.EnvironmentModulesC DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
| == 2015-05-20 18:11:25,123 main.main.main.EnvironmentModulesC DEBUG 'module available ' gave 4 answers: ['EasyBuild/2.1.1', 'GCC/4.9.2-binutils-2.25', 'binutils/2.25', 'zlib/1.2.8'] | |
| == 2015-05-20 18:11:25,126 main ERROR No module found for toolchain: GNU/4.9.2-2.25 (at easybuild/tools/toolchain/toolchain.py:375 in prepare) | |
| == 2015-05-20 18:11:25,128 main.easyblock WARNING build failed (first 300 chars): No module found for toolchain: GNU/4.9.2-2.25 | |
| == 2015-05-20 18:11:25,128 main.ConfigureMake INFO Closing log for application name M4 version 1.4.17 |
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