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7yl4r / gist:d7c92a3b1091cd1c6c18250270e92540
Created January 30, 2024 14:09
gee-dan-2024-01.js
// PRVI LST Calc v24
// There are multiple ways to calculate LST
// 1. Cook paper method (directly available from files ("ST_B10" - see below)
// 2. NDVI method (need to add)
// 3. Old method w/atm. coefficients (see below)
// Can we use the Lu and Ld to get LST the old way?
// How to get emissivity and water content?
// 4. Split-window method (will work with LS8?)
// Some functions:
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7yl4r / imars-processing-env.mmd
Created December 13, 2023 21:53
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7yl4r / pyOpenSci_presusbmission_draft.md
Last active August 4, 2023 14:23

Submitting Author: Name (@github_handle)
All current maintainers: (@ayushanand18, @7yl4r)
Package Name: pyOBIS
One-Line Description of Package: OBIS python client.
Repository Link: https://github.com/iobis/pyobis
Version submitted: 1.4.0
Editor: TBD
Reviewer 1: TBD
Reviewer 2: TBD
Archive: TBD

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7yl4r / afscgap-review-template.md
Last active May 19, 2023 15:30

Package Review

  • As the reviewer I confirm that there are no conflicts of interest for me to review this work (If you are unsure whether you are in conflict, please speak to your editor before starting your review).

Documentation

The package includes all the following forms of documentation:

  • A statement of need clearly stating problems the software is designed to solve and its target audience in README.
  • Installation instructions: for the development version of the package and any non-standard dependencies in README.
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7yl4r / ipfs-powered-filesystem-bridge.md
Created March 25, 2023 02:35

  • ipfs is installed on all systems

  • local filesystem contains a cached version of the files on the local

  • a datastructure on the local is maintained to map each filepath to:

    • an IPFS location
    • metadata on the file?

  • accomplish this with git:

  • an .ipfs_cache/{filename} file is maintained for each file on the filesystem

  • the .ipfs_cache/ files are plain-text files which are used to keep the local cache updated

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7yl4r / Coastal-New-England-MBON.md
Last active March 21, 2023 17:47

COASTAL NEW ENGLAND MBON

The Coastal New England project integrates powerful technologies (acoustic telemetry, environmental DNA [eDNA], and acoustics) with traditional fisheries sampling to quantify impacts of changes in local and regional water conditions on individuals, populations, and community structure. Research includes study of the impacts of forage species and environmental conditions on Atlantic cod and common terns in both New Hampshire (Isles of Shoals) and southern Maine (Casco Bay) coastal waters. To study the movements of these predators, tracking tags (GPS technology for terns, acoustic technology for Atlantic cod) are used to follow their movements. We will also examine their diet, by analyzing gut contents from Atlantic cod (both visually and via genomic methods) and terns (via genomics of fecal samples). The availability of forage species (including river herring, Atlantic herring, and squid) can be quantified through tracking, active acoustics, passive acoustics, and eDNA of water sample

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7yl4r / dasdds_output.txt
Created March 13, 2023 20:10
for debugging https://github.com/USF-IMARS/erddap-config/issues/35
[tylar@dune ~]$ docker exec -it erddap bash -c "cd webapps/erddap/WEB-INF/ && bash DasDds.sh -verbose"
////**** EDStatic Low Level Startup
localTime=2023-03-13T20:06:13+00:00
erddapVersion=2.18
Java 1.8.0_322 (64 bit, Oracle Corporation) on Linux (4.18.0-408.el8.x86_64).
MemoryInUse= 50 MB (highWaterMark= 50 MB) (Xmx ~= 958 MB)
logLevel=info: verbose=true reallyVerbose=false
got bigParentDirectory from ERDDAP_bigParentDirectory
got emailFromAddress from ERDDAP_emailFromAddress
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7yl4r / README.md
Last active March 14, 2023 17:56
MBON data pipeline schema

The goal is to create maximally-human-usable documentation of datasets, tools, indicators, etc relevant to MBON researchers.

Each entity (eg dataset) would have a directory with a README.md and optional other files. Files to submit to wikidata could also be generated.

Ideally:

  • each entity (eg datset) has a homepage
  • structured metadata is searchable
  • API to access the data
  • programmatically ingest data
@7yl4r
7yl4r / minutes.md
Created December 8, 2022 18:59
SE US MBON Meeting 2022-12-08
  • MBON data portal training is upcoming.
  • when developing products remember to keep international users in mind
    • USAD funding might be available
    • Adriano Lima from the Air Centre can also help develop products
      • he has technical ability
      • was already able to leverage seascapR to create shiny app
      • Portuguese tranlation for could be helpful
        • Ben has had good experiences using google translate for i18n
        • Thiago also willing to help
  • We need better data management
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7yl4r / notes-2022_11_17.md
Created November 17, 2022 20:41
IMaRS + Planet meeting