AliciaSchep

# Credit http://stackoverflow.com/a/2514279
for branch in `git branch -r | grep -v HEAD`;do echo -e `git show --format="%ci %cr" $branch | head -n 1` \\t$branch; done | sort -r

AliciaSchep

library(shiny)
library(miniUI)
library(gmailr)
library(rtweet)
library(purrr)

use_secret_file("~/client_id.json")

send_email <- function(to_address, picture_url, msg = "", 
                       subject = "Cute Picture", expanded_url = picture_url){

AliciaSchep

p <- plot_ly(mtcars, x = ~wt) %>%
  add_markers(y = ~mpg, name = "A") %>%
  add_markers(y = ~hp, name = "B", visible = F) %>%
  layout(
    title = "Drop down menus - Update",
    xaxis = list(domain = c(0.1, 1)),
    yaxis = list(title = "mpg"),
    updatemenus = list(
      list(
        y = 0.7,

AliciaSchep

## Adapted from r-lib/pkgdown source code from RStudio https://github.com/r-lib/pkgdown

## Helper functions, directly from pkgdown code --------------------------------
git <- function(...) {
  processx::run("git", c(...), echo_cmd = TRUE, echo = TRUE)
}

github_clone <- function(dir, repo_slug) {
  remote_url <- sprintf("git@github.com:%s.git", repo_slug)
  cli::rule("Cloning existing site", line = 1)

AliciaSchep

---
title: "event listener bug"
author: "Alicia Schep"
date: "April 11, 2018"
output: html_document
---

```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
```

AliciaSchep

get_r_files <- function(path = ".", recursive = FALSE, include_rmd = TRUE){
  all_files <- normalizePath(list.files(path, full.names = TRUE, 
                                        recursive = recursive))
  
  r_files <- grep(".*\\.(r|R)$", all_files, value = TRUE)
  
  if (include_rmd){
    r_files <- c(r_files, 
                 grep(".*\\.(r|R)md$", all_files, value = TRUE))
  }

AliciaSchep

create_lib_dir <- function(name, path = "."){
  
  dir_path <- file.path(path, name)
  if (!dir.exists(dir_path)) {
    message("Creating new dir: ", dir_path)
    dir.create(dir_path)
  }
  
  normalizePath(dir_path)
}

AliciaSchep

setClass("DummyClass",
         slots = c(y = "numeric"))


setClass("SpecialClass",
         slots = c(x = "numeric"),
         contains = c("DummyClass"))


setClass("SpecialList",

AliciaSchep

library(GenomicRanges)
library(S4Vectors)

# Footprint does not include +/- 4 correction for ATAC-seq

# Modified tabulate funcion ----------------------------------------------------

tabulate2 <- function(x, min_val, max_val) {
  if (max_val <= min_val) {
    stop("max_val must be greater than min_val")

AliciaSchep

{
  "$schema": "https://vega.github.io/schema/vega-lite/v2.json",
  "description": "Two horizonally concatenated charts that show a histogram of precipitation in Seattle and the relationship between min and max temperature.",
  "data": {
    "url": "data/weather.csv",
    "format": {
      "type": "csv"
    }
  },
  "transform": [