Cameron Davidson-Pilon CamDavidsonPilon

## light_dark_cycle_led_automation.py
# -*- coding: utf-8 -*-
from __future__ import annotations
import signal
from pioreactor.automations import LEDAutomationContrib
from pioreactor.automations import events
from pioreactor.actions.led_intensity import LED_Channel

__plugin_summary__ = "An LED automation for ON/OFF cycles"
__plugin_version__ = "0.0.2"
__plugin_name__ = "Light Dark Cycle LED automation"

## install_pioreactor_as_leader.sh
#!/bin/bash

sudo apt update
sudo apt install -y git

git clone https://github.com/Pioreactor/pioreactor.git --depth 1
cd pioreactor

make install-leader

## install_pioreactor_as_worker.sh
#!/bin/bash

sudo apt update
sudo apt install -y git

git clone https://github.com/Pioreactor/pioreactor.git --depth 1
cd pioreactor

make install-worker-from-args newHostname=$1

## install_pioreactor_leader_as_worker.sh
#!/bin/bash

sudo apt update
sudo apt install -y git

git clone https://github.com/Pioreactor/pioreactor.git --depth 1
cd pioreactor

make install-leader-as-worker

## fivethirtyeight.csv

          
            votes
             scaled_prob

            
              64.02877697841728
               0

            
              79.85611510791367
               0

            
              93.52517985611513
               0

            
              107.19006190396522
               0.0

            
              120.14388489208633
               0

            
              135.97122302158274
               0

            
              151.07913669064752
               0

            
              159.70386481512466
               0.011627906976744207

            
              173.36038146227202
               0.02906976744186074

## nodered.json
[
    {
        "id": "328cb8d0.ad53d8",
        "type": "tab",
        "label": "Flow 1",
        "disabled": false,
        "info": ""
    },
    {
        "id": "e064c4c9.ed0b18",

## DHT22.py
import time
import board
import adafruit_dht
from  paho.mqtt import publish

# Initial the dht device, with data pin connected to:
dhtDevice = adafruit_dht.DHT22(board.D21)


while True:

## b_splines.ipynb

      
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              August 3, 2020 14:42
            
          
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## model2.py
"""
Our model is

 log(cell/ml) = alpha * (secchi stick depth) + intercept + Noise

However, our cell/mL comes from a noisy hemocytometer, and our
depth measured with the secchi stick is also noisy. Our goal is
still to infer alpha & intercept as well as possible, so we can
dump the hemocytometer.

## show_problem_eval.py
# test previous algorithm

actuals = pd.read_csv("https://gist.githubusercontent.com/csaid/a57c4ebaa1c7b0671cdc9692638ea4c4/raw/ad1709938834d7bc88b62ff0763733502eb6a329/shower_problem_tau_samples.csv")


DELTA = 0.1

def survival_function(t, lambda_=50., rho=1.5):
    # Assume simple Weibull model
    return np.exp(-(t/lambda_) ** rho)
	# -- coding: utf-8 --
	from __future__ import annotations
	import signal
	from pioreactor.automations import LEDAutomationContrib
	from pioreactor.automations import events
	from pioreactor.actions.led_intensity import LED_Channel

	__plugin_summary__ = "An LED automation for ON/OFF cycles"
	__plugin_version__ = "0.0.2"
	__plugin_name__ = "Light Dark Cycle LED automation"
	#!/bin/bash

	sudo apt update
	sudo apt install -y git

	git clone https://github.com/Pioreactor/pioreactor.git --depth 1
	cd pioreactor

	make install-leader
	votes	scaled_prob
	64.02877697841728	0
	79.85611510791367	0
	93.52517985611513	0
	107.19006190396522	0.0
	120.14388489208633	0
	135.97122302158274	0
	151.07913669064752	0
	159.70386481512466	0.011627906976744207
	173.36038146227202	0.02906976744186074
	[
	{
	"id": "328cb8d0.ad53d8",
	"type": "tab",
	"label": "Flow 1",
	"disabled": false,
	"info": ""
	},
	{
	"id": "e064c4c9.ed0b18",
	import time
	import board
	import adafruit_dht
	from paho.mqtt import publish

	# Initial the dht device, with data pin connected to:
	dhtDevice = adafruit_dht.DHT22(board.D21)


	while True:
	"""
	Our model is

	log(cell/ml) = alpha * (secchi stick depth) + intercept + Noise

	However, our cell/mL comes from a noisy hemocytometer, and our
	depth measured with the secchi stick is also noisy. Our goal is
	still to infer alpha & intercept as well as possible, so we can
	dump the hemocytometer.
	# test previous algorithm

	actuals = pd.read_csv("https://gist.githubusercontent.com/csaid/a57c4ebaa1c7b0671cdc9692638ea4c4/raw/ad1709938834d7bc88b62ff0763733502eb6a329/shower_problem_tau_samples.csv")


	DELTA = 0.1

	def survival_function(t, lambda_=50., rho=1.5):
	# Assume simple Weibull model
	return np.exp(-(t/lambda_) ** rho)