Created
November 19, 2013 13:35
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crash statmodels
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In [1]: import pyximport | |
(reverse-i-search)`pyxi': import pyximport | |
KeyboardInterrupt | |
In [2]: pyximport.install() | |
Out[2]: (None, <pyximport.pyximport.PyxImporter at 0x10e3bdfd0>) | |
In [3]: import statsmodels.api as sm | |
/Users/matthiasbussonnier/.pyxbld/temp.macosx-10.7-x86_64-2.7/pyrex/statsmodels/tsa/kalmanf/kalman_loglike.c:321:10: fatal error: 'numpy/arrayobject.h' file not found | |
#include "numpy/arrayobject.h" | |
^ | |
1 error generated. | |
--------------------------------------------------------------------------- | |
ImportError Traceback (most recent call last) | |
<ipython-input-3-6030a6549dc0> in <module>() | |
----> 1 import statsmodels.api as sm | |
/usr/local/lib/python2.7/site-packages/statsmodels/api.py in <module>() | |
10 from .discrete.discrete_model import (Poisson, Logit, Probit, MNLogit, | |
11 NegativeBinomial) | |
---> 12 from .tsa import api as tsa | |
13 from .nonparametric import api as nonparametric | |
14 import distributions | |
/usr/local/lib/python2.7/site-packages/statsmodels/tsa/api.py in <module>() | |
----> 1 from .ar_model import AR | |
2 from .arima_model import ARMA, ARIMA | |
3 import vector_ar as var | |
4 from .vector_ar.var_model import VAR | |
5 from .vector_ar.svar_model import SVAR | |
/usr/local/lib/python2.7/site-packages/statsmodels/tsa/ar_model.py in <module>() | |
16 from statsmodels.tools.numdiff import (approx_fprime, approx_hess, | |
17 approx_hess_cs) | |
---> 18 from statsmodels.tsa.kalmanf.kalmanfilter import KalmanFilter | |
19 import statsmodels.base.wrapper as wrap | |
20 from statsmodels.tsa.vector_ar import util | |
/usr/local/lib/python2.7/site-packages/statsmodels/tsa/kalmanf/__init__.py in <module>() | |
----> 1 from kalmanfilter import KalmanFilter | |
/usr/local/lib/python2.7/site-packages/statsmodels/tsa/kalmanf/kalmanfilter.py in <module>() | |
30 from numpy.linalg import inv, pinv | |
31 from statsmodels.tools.tools import chain_dot | |
---> 32 from . import kalman_loglike | |
33 | |
34 #Fast filtering and smoothing for multivariate state space models | |
/usr/local/Cellar/python/2.7.5/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython-0.20dev-py2.7-macosx-10.7-x86_64.egg/pyximport/pyximport.pyc in load_module(self, fullname) | |
429 self.pyxbuild_dir, | |
430 build_inplace=self.inplace, | |
--> 431 language_level=self.language_level) | |
432 return module | |
433 | |
/usr/local/Cellar/python/2.7.5/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython-0.20dev-py2.7-macosx-10.7-x86_64.egg/pyximport/pyximport.pyc in load_module(name, pyxfilename, pyxbuild_dir, is_package, build_inplace, language_level, so_path) | |
207 module_name = name | |
208 so_path = build_module(module_name, pyxfilename, pyxbuild_dir, | |
--> 209 inplace=build_inplace, language_level=language_level) | |
210 mod = imp.load_dynamic(name, so_path) | |
211 if is_package and not hasattr(mod, '__path__'): | |
/usr/local/Cellar/python/2.7.5/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython-0.20dev-py2.7-macosx-10.7-x86_64.egg/pyximport/pyximport.pyc in build_module(name, pyxfilename, pyxbuild_dir, inplace, language_level) | |
184 setup_args=sargs, | |
185 inplace=inplace, | |
--> 186 reload_support=pyxargs.reload_support) | |
187 assert os.path.exists(so_path), "Cannot find: %s" % so_path | |
188 | |
/usr/local/Cellar/python/2.7.5/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython-0.20dev-py2.7-macosx-10.7-x86_64.egg/pyximport/pyxbuild.pyc in pyx_to_dll(filename, ext, force_rebuild, build_in_temp, pyxbuild_dir, setup_args, reload_support, inplace) | |
102 try: | |
103 obj_build_ext = dist.get_command_obj("build_ext") | |
--> 104 dist.run_commands() | |
105 so_path = obj_build_ext.get_outputs()[0] | |
106 if obj_build_ext.inplace: | |
/usr/local/Cellar/python/2.7.5/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.pyc in run_commands(self) | |
951 """ | |
952 for cmd in self.commands: | |
--> 953 self.run_command(cmd) | |
954 | |
955 # -- Methods that operate on its Commands -------------------------- | |
/usr/local/Cellar/python/2.7.5/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.pyc in run_command(self, command) | |
970 cmd_obj = self.get_command_obj(command) | |
971 cmd_obj.ensure_finalized() | |
--> 972 cmd_obj.run() | |
973 self.have_run[command] = 1 | |
974 | |
/usr/local/Cellar/python/2.7.5/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython-0.20dev-py2.7-macosx-10.7-x86_64.egg/Cython/Distutils/build_ext.pyc in run(self) | |
161 optimization.disable_optimization() | |
162 | |
--> 163 _build_ext.build_ext.run(self) | |
164 | |
165 def build_extensions(self): | |
/usr/local/Cellar/python/2.7.5/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/command/build_ext.pyc in run(self) | |
337 | |
338 # Now actually compile and link everything. | |
--> 339 self.build_extensions() | |
340 | |
341 def check_extensions_list(self, extensions): | |
/usr/local/Cellar/python/2.7.5/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython-0.20dev-py2.7-macosx-10.7-x86_64.egg/Cython/Distutils/build_ext.pyc in build_extensions(self) | |
169 for ext in self.extensions: | |
170 ext.sources = self.cython_sources(ext.sources, ext) | |
--> 171 self.build_extension(ext) | |
172 | |
173 def cython_sources(self, sources, extension): | |
/usr/local/Cellar/python/2.7.5/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/command/build_ext.pyc in build_extension(self, ext) | |
496 debug=self.debug, | |
497 extra_postargs=extra_args, | |
--> 498 depends=ext.depends) | |
499 | |
500 # XXX -- this is a Vile HACK! | |
/usr/local/Cellar/python/2.7.5/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/ccompiler.pyc in compile(self, sources, output_dir, macros, include_dirs, debug, extra_preargs, extra_postargs, depends) | |
572 except KeyError: | |
573 continue | |
--> 574 self._compile(obj, src, ext, cc_args, extra_postargs, pp_opts) | |
575 | |
576 # Return *all* object filenames, not just the ones we just built. | |
/usr/local/Cellar/python/2.7.5/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/unixccompiler.pyc in _compile(self, obj, src, ext, cc_args, extra_postargs, pp_opts) | |
120 extra_postargs) | |
121 except DistutilsExecError, msg: | |
--> 122 raise CompileError, msg | |
123 | |
124 def create_static_lib(self, objects, output_libname, | |
ImportError: Building module statsmodels.tsa.kalmanf.kalman_loglike failed: ["CompileError: command 'cc' failed with exit status 1\n"] |
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