| """ | |
| Load dendrograms into a Glue session | |
| """ | |
| from glue.core.data_factories import load_data | |
| try: | |
| # v>=0.5 | |
| from glue.core.data_factories.dendro_loader import load_dendro | |
| from glue.core.data_factories.tables import astropy_tabular_data | |
| except ImportError: |
| from glue import custom_viewer, qglue | |
| from glue.clients.ds9norm import DS9Normalize | |
| image = custom_viewer('image', | |
| contrast=(0.0, 1.0), | |
| image='att' | |
| ) | |
| @image.plot_data | |
| def draw(axes, image, contrast): |
| ==786== Memcheck, a memory error detector | |
| ==786== Copyright (C) 2002-2013, and GNU GPL'd, by Julian Seward et al. | |
| ==786== Using Valgrind-3.11.0.SVN and LibVEX; rerun with -h for copyright info | |
| ==786== Command: /Users/cbeaumont/anaconda/bin/python test.py | |
| ==786== Parent PID: 445 | |
| ==786== | |
| --786-- /Users/cbeaumont/anaconda/bin/python: | |
| --786-- dSYM directory is missing; consider using --dsymutil=yes | |
| --786-- /Users/cbeaumont/anaconda/lib/libpython2.7.dylib: | |
| --786-- dSYM directory is missing; consider using --dsymutil=yes |
| In [40]: from collections import defaultdict | |
| In [41]: data = defaultdict(list) | |
| In [42]: for row in json.load(open('arup.json')): | |
| data[getkey(row)].append(row) | |
| ....: | |
| In [43]: for vals in data.values(): | |
| if not all(v == vals[0] for v in vals): |
| import numpy as np | |
| from glue import custom_viewer, qglue | |
| pcoord = custom_viewer('Parallele Coordinates') | |
| def _plot_pcoords(axes, dataframe, **kwargs): | |
| colnames = dataframe.columns |
| gene,transcript,is_default | |
| APC,NM_001127510.2,False | |
| APC,NM_001127511.2,False | |
| APC,NM_000038.5,True | |
| ATM,NM_000051.3,True | |
| BARD1,NM_001282543.1,False | |
| BARD1,NM_001282545.1,False | |
| BARD1,NM_001282548.1,False | |
| BARD1,NM_001282549.1,False | |
| BARD1,NR_104212.1,False |
Demo for thinking about how to integrate lists of spectra with Glue.
This demo requires using the in-development "table" branch of GitHub. The best way to set this up is to install Glue in "development" mode:
Checkout glue source code from github:
git clone https://github.com/glue-viz/glue.git
| import shifted_maps |