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rstudio-diagnostics
Raw
rstudio-diagnostics-1
RStudio Diagnostics Report
==========================
WARNING: This report may contain sensitive security information and / or
personally identifiable information. Please audit the below and redact any
sensitive information before submitting your diagnostics report.
Generated: Fri Mar 4 11:44:24 2022
RStudio Version
--------------------------------------------------
2021.09.2+382
Session Information
--------------------------------------------------
R version 4.1.2 (2021-11-01)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Manjaro Linux
Matrix products: default
BLAS: /usr/lib/libblas.so.3.10.0
LAPACK: /usr/lib/liblapack.so.3.10.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=pl_PL.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=pl_PL.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=pl_PL.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=pl_PL.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_4.1.2 tools_4.1.2
System Information
--------------------------------------------------
sysname : Linux
release : 5.10.102-1-MANJARO
version : #1 SMP PREEMPT Wed Feb 23 14:44:40 UTC 2022
nodename : rafaczbook
machine : x86_64
login : rafaczd
user : rafaczd
effective_user : rafaczd
Platform Information
--------------------------------------------------
OS.type : unix
file.sep : /
dynlib.ext : .so
GUI : X11
endian : little
pkgType : source
path.sep : :
r_arch :
Environment Variables
--------------------------------------------------
CLICOLOR_FORCE : 1
COLORTERM : truecolor
CUDA_PATH : /opt/cuda
DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/1000/bus
DESKTOP_SESSION : xfce
DISPLAY : :0.0
EDITOR : /usr/bin/nano
GDM_LANG : en_US.utf8
GDMSESSION : xfce
GIT_ASKPASS : rpostback-askpass
GTK_MODULES : canberra-gtk-module:canberra-gtk-module
GTK2_RC_FILES : /home/rafaczd/.gtkrc-2.0
GTK3_MODULES : xapp-gtk3-module:xapp-gtk3-module
HOME : /home/rafaczd
KDEDIRS : /usr
LANG : en_US.UTF-8
LC_ADDRESS : pl_PL.UTF-8
LC_IDENTIFICATION : pl_PL.UTF-8
LC_MEASUREMENT : pl_PL.UTF-8
LC_MONETARY : pl_PL.UTF-8
LC_NAME : pl_PL.UTF-8
LC_NUMERIC : pl_PL.UTF-8
LC_PAPER : pl_PL.UTF-8
LC_TELEPHONE : pl_PL.UTF-8
LC_TIME : pl_PL.UTF-8
LD_LIBRARY_PATH : /usr/lib64/R/lib:/lib:/usr/lib/jvm/java-17-openjdk/lib/server
LESS : -R
LN_S : ln -s
LOGNAME : *** redacted ***
LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:
LSCOLORS : Gxfxcxdxbxegedabagacad
MAIL : /var/spool/mail/rafaczd
MAKE : make
MOTD_SHOWN : pam
OLDPWD : /home/rafaczd/.rstudio-desktop-backup/log
P9K_SSH : 0
P9K_TTY : old
PAGER : less
PATH : /home/rafaczd/.pyenv/shims:/home/rafaczd/.pyenv/bin:/home/rafaczd/.cargo/bin:/home/rafaczd/.local/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/opt/cuda/bin:/opt/cuda/nsight_compute:/opt/cuda/nsight_systems/bin:/usr/lib/jvm/default/bin:/usr/bin/site_perl:/usr/bin/vendor_perl:/usr/bin/core_perl:/var/lib/snapd/snap/bin:/home/rafaczd/.oh-my-zsh/custom/plugins/dropbox/bin:/home/rafaczd/.fzf/bin:/usr/lib/rstudio/bin/postback
PWD : *** redacted ***
PYENV_ROOT : /home/rafaczd/.pyenv
PYENV_SHELL : zsh
PYTHONIOENCODING : utf-8
QT_AUTO_SCREEN_SCALE_FACTOR : 0
QT_DIR : /usr/lib/rstudio
QT_PLUGIN_PATH : /usr/lib/rstudio/plugins
QT_QPA_PLATFORM_PLUGIN_PATH : /usr/lib/rstudio/plugins/platforms
QT_QPA_PLATFORMTHEME : qt5ct
R_BROWSER :
R_BZIPCMD : /usr/bin/bzip2
R_DOC_DIR : /usr/share/doc/R/
R_GZIPCMD : /usr/bin/gzip
R_HOME : /usr/lib64/R
R_INCLUDE_DIR : /usr/include/R/
R_LIBS_SITE :
R_LIBS_USER : ~/R/x86_64-pc-linux-gnu-library/4.1
R_PAPERSIZE : letter
R_PDFVIEWER :
R_PLATFORM : x86_64-pc-linux-gnu
R_PRINTCMD :
R_RD4PDF : times,hyper
R_SESSION_TMPDIR : /tmp/Rtmp2cpcQ0
R_SHARE_DIR : /usr/share/R/
R_STRIP_SHARED_LIB : strip --strip-unneeded
R_STRIP_STATIC_LIB : strip --strip-debug
R_SYSTEM_ABI : linux,gcc,gxx,gfortran,gfortran
R_TEXI2DVICMD : /usr/bin/texi2dvi
R_UNZIPCMD : /usr/bin/unzip
R_ZIPCMD : /usr/bin/zip
RMARKDOWN_MATHJAX_PATH : /usr/lib/rstudio/resources/mathjax-27
RS_PPM_FD_READ : 21
RS_PPM_FD_WRITE : 22
RS_RPOSTBACK_PATH : /usr/lib/rstudio/bin/rpostback
RS_SHARED_SECRET : *** redacted ***
RSTUDIO : 1
RSTUDIO_CONSOLE_COLOR : 256
RSTUDIO_CONSOLE_WIDTH : 80
RSTUDIO_PANDOC : /usr/lib/rstudio/bin/pandoc
RSTUDIO_PROGRAM_MODE : desktop
RSTUDIO_SESSION_PORT : 21013
RSTUDIO_USER_IDENTITY : rafaczd
RSTUDIO_WINUTILS : bin/winutils
SED : /usr/bin/sed
SESSION_MANAGER : local/rafaczbook:@/tmp/.ICE-unix/1188,unix/rafaczbook:/tmp/.ICE-unix/1188
SHELL : /usr/bin/zsh
SHLVL : 1
SSH_AGENT_PID : 1250
SSH_AUTH_SOCK : *** redacted ***
TAR : /usr/bin/tar
TERM : xterm-256color
USER : rafaczd
VTE_VERSION : 6602
WINDOWID : 85983243
XAUTHORITY : /home/rafaczd/.Xauthority
XDG_CONFIG_DIRS : /etc/xdg
XDG_CURRENT_DESKTOP : XFCE
XDG_DATA_DIRS : /usr/local/share:/usr/share:/var/lib/snapd/desktop:/usr/share
XDG_GREETER_DATA_DIR : /var/lib/lightdm-data/rafaczd
XDG_MENU_PREFIX : xfce-
XDG_RUNTIME_DIR : /run/user/1000
XDG_SEAT : seat0
XDG_SEAT_PATH : /org/freedesktop/DisplayManager/Seat0
XDG_SESSION_CLASS : user
XDG_SESSION_DESKTOP : xfce
XDG_SESSION_ID : 2
XDG_SESSION_PATH : /org/freedesktop/DisplayManager/Session0
XDG_SESSION_TYPE : x11
XDG_VTNR : 7
ZSH : /home/rafaczd/.oh-my-zsh
R Version
--------------------------------------------------
platform : x86_64-pc-linux-gnu
arch : x86_64
os : linux-gnu
system : x86_64, linux-gnu
status :
major : 4
minor : 1.2
year : 2021
month : 11
day : 01
svn rev : 81115
language : R
version.string : R version 4.1.2 (2021-11-01)
nickname : Bird Hippie
R Home
--------------------------------------------------
/usr/lib64/R
R Search Path
--------------------------------------------------
.GlobalEnv
tools:rstudio
package:stats
package:graphics
package:grDevices
package:utils
package:datasets
package:methods
Autoloads
package:base
R Library Paths
--------------------------------------------------
/home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1
/usr/lib/R/library
Loaded Packages
--------------------------------------------------
compiler : /usr/lib/R/library/compiler
datasets : /usr/lib/R/library/datasets
graphics : /usr/lib/R/library/graphics
grDevices : /usr/lib/R/library/grDevices
methods : /usr/lib/R/library/methods
stats : /usr/lib/R/library/stats
tools : /usr/lib/R/library/tools
utils : /usr/lib/R/library/utils
base : /usr/lib64/R/library/base
Installed Packages
--------------------------------------------------
Package LibPath Version
1 ade4 /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.7-18
2 AmyloGraph /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.2.1
3 AnnotationDbi /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.54.1
4 ape /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 5.6-1
5 askpass /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.1
6 backports /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.4.1
7 base64enc /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.1-3
8 base64url /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.4
9 BBmisc /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.11
10 BH /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.78.0-0
11 Biobase /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 2.52.0
12 BiocGenerics /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.38.0
13 BiocManager /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.30.16
14 BiocVersion /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 3.13.1
15 biogram /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.6.3
16 BioNet /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.52.0
17 bioseq /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.1.3
18 Biostrings /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 2.60.1
19 bit /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 4.0.4
20 bit64 /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 4.0.5
21 bitops /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.0-7
22 blob /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.2.2
23 brew /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.0-7
24 brio /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.1.3
25 broom /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.7.12
26 bslib /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.3.1
27 cachem /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.0.6
28 callr /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 3.7.0
29 caret /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 6.0-90
30 cellranger /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.1.0
31 checkmate /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 2.0.0
32 cli /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 3.2.0
33 clipr /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.8.0
34 CodeDepends /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.6.5
35 colorspace /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 2.0-3
36 combinat /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.0-8
37 commonmark /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.7
38 covr /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 3.5.1
39 cowplot /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.1.1
40 cpp11 /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.4.2
41 cranlogs /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 2.1.1
42 crayon /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.5.0
43 credentials /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.3.2
44 crosstalk /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.2.0
45 crul /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.2.0
46 curl /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 4.3.2
47 data.table /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.14.2
48 datastructures /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.2.9
49 DBI /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.1.2
50 dbplyr /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 2.1.1
51 debugme /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.1.0
52 deepdep /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.4.1
53 desc /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.4.0
54 devtools /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 2.4.3
55 diffobj /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.3.5
56 digest /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.6.29
57 downlit /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.4.0
58 dplyr /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.0.8
59 DT /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.20
60 dtplyr /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.2.1
61 e1071 /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.7-9
62 ellipsis /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.3.2
63 entropy /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.3.1
64 enumeR /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.0.0.9000
65 evaluate /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.15
66 fansi /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.0.2
67 fastmap /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.1.0
68 fastmatch /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.1-3
69 fauxpas /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.5.0
70 fontawesome /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.2.2
71 forcats /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.5.1
72 foreach /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.5.2
73 fs /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.5.2
74 future /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.24.0
75 future.apply /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.8.1
76 gargle /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.2.0
77 generics /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.1.2
78 GenomeInfoDb /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.28.1
79 GenomeInfoDbData /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.2.6
80 gert /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.5.0
81 ggforce /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.3.3
82 ggplot2 /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 3.3.5
83 ggraph /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 2.0.5
84 ggrepel /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.9.1
85 ggsci /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 2.9
86 gh /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.3.0
87 gitcreds /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.1.1
88 glmnet /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 4.1-3
89 globals /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.14.0
90 glue /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.6.1
91 gmp /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.6-2.1
92 googledrive /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 2.0.0
93 googlesheets4 /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.0.0
94 gower /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.0.0
95 graph /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.70.0
96 graphlayouts /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.8.0
97 gridExtra /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 2.3
98 gsubfn /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.7
99 HaDeX /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.2.1
100 hardhat /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.2.0
101 haven /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 2.4.3
102 highr /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.9
103 hms /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.1.1
104 htmltools /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.5.2
105 htmlwidgets /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.5.4
106 httpcode /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.3.0
107 httpuv /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.6.5
108 httr /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.4.2
109 hunspell /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 3.0.1
110 icecream /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.2.0
111 ids /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.0.1
112 igraph /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.2.11
113 ini /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.3.1
114 ipred /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.9-12
115 IRanges /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 2.26.0
116 isoband /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.2.5
117 iterators /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.0.14
118 jquerylib /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.1.4
119 jsonlite /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.8.0
120 KEGGREST /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.32.0
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190 proxy /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.4-26
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192 ps /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.6.0
193 purrr /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.3.4
194 R6 /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 2.5.1
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206 readr /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 2.1.2
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208 recipes /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.2.0
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214 rex /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.2.1
215 rhub /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.1.1
216 RJSONIO /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.3-1.6
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223 rvest /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.0.2
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280 vroom /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.5.7
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282 webdriver /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.0.6
283 webmockr /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.8.0
284 whisker /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.4
285 whoami /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.3.0
286 withr /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 2.4.3
287 writexl /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.4.0
288 xfun /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.29
289 XML /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 3.99-0.8
290 xml2 /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.3.3
291 xopen /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.0.0
292 xtable /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.8-4
293 XVector /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 0.32.0
294 yaml /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 2.3.5
295 zip /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 2.2.0
296 zlibbioc /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.38.0
297 zoo /home/rafaczd/R/x86_64-pc-linux-gnu-library/4.1 1.8-9
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299 base /usr/lib/R/library 4.1.2
300 base64enc /usr/lib/R/library 0.1-3
301 boot /usr/lib/R/library 1.3-28
302 brio /usr/lib/R/library 1.1.0
303 callr /usr/lib/R/library 3.5.1
304 class /usr/lib/R/library 7.3-19
305 cli /usr/lib/R/library 2.2.0
306 cluster /usr/lib/R/library 2.1.2
307 codetools /usr/lib/R/library 0.2-18
308 colorspace /usr/lib/R/library 2.0-0
309 compiler /usr/lib/R/library 4.1.2
310 crayon /usr/lib/R/library 1.3.4
311 datasets /usr/lib/R/library 4.1.2
312 desc /usr/lib/R/library 1.2.0
313 diffobj /usr/lib/R/library 0.3.2
314 digest /usr/lib/R/library 0.6.27
315 ellipsis /usr/lib/R/library 0.3.1
316 evaluate /usr/lib/R/library 0.14
317 fansi /usr/lib/R/library 0.4.1
318 farver /usr/lib/R/library 2.1.0
319 foreign /usr/lib/R/library 0.8-81
320 generics /usr/lib/R/library 0.1.0
321 ggplot2 /usr/lib/R/library 3.3.3
322 glue /usr/lib/R/library 1.4.2
323 graphics /usr/lib/R/library 4.1.2
324 grDevices /usr/lib/R/library 4.1.2
325 grid /usr/lib/R/library 4.1.2
326 gtable /usr/lib/R/library 0.3.0
327 highr /usr/lib/R/library 0.8
328 htmltools /usr/lib/R/library 0.5.0
329 isoband /usr/lib/R/library 0.2.4
330 jsonlite /usr/lib/R/library 1.7.1
331 KernSmooth /usr/lib/R/library 2.23-20
332 knitr /usr/lib/R/library 1.30
333 labeling /usr/lib/R/library 0.4.2
334 lattice /usr/lib/R/library 0.20-45
335 lifecycle /usr/lib/R/library 0.2.0
336 magrittr /usr/lib/R/library 2.0.1
337 markdown /usr/lib/R/library 1.1
338 MASS /usr/lib/R/library 7.3-54
339 Matrix /usr/lib/R/library 1.3-4
340 methods /usr/lib/R/library 4.1.2
341 mgcv /usr/lib/R/library 1.8-38
342 mime /usr/lib/R/library 0.9
343 munsell /usr/lib/R/library 0.5.0
344 nlme /usr/lib/R/library 3.1-153
345 nnet /usr/lib/R/library 7.3-16
346 parallel /usr/lib/R/library 4.1.2
347 pillar /usr/lib/R/library 1.4.7
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349 pkgconfig /usr/lib/R/library 2.0.3
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351 praise /usr/lib/R/library 1.0.0
352 prettyunits /usr/lib/R/library 1.1.1
353 processx /usr/lib/R/library 3.4.4
354 ps /usr/lib/R/library 1.4.0
355 R6 /usr/lib/R/library 2.5.0
356 RColorBrewer /usr/lib/R/library 1.1-2
357 Rcpp /usr/lib/R/library 1.0.6
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359 renv /usr/lib/R/library 0.12.2
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R System Profile: /usr/lib64/R/library/base/R/Rprofile
--------------------------------------------------
### This is the system Rprofile file. It is always run on startup.
### Additional commands can be placed in site or user Rprofile files
### (see ?Rprofile).
### Copyright (C) 1995-2020 The R Core Team
### Notice that it is a bad idea to use this file as a template for
### personal startup files, since things will be executed twice and in
### the wrong environment (user profiles are run in .GlobalEnv).
.GlobalEnv <- globalenv()
attach(NULL, name = "Autoloads")
.AutoloadEnv <- as.environment(2)
assign(".Autoloaded", NULL, envir = .AutoloadEnv)
T <- TRUE
F <- FALSE
R.version <- structure(R.Version(), class = "simple.list")
version <- R.version # for S compatibility
## for backwards compatibility only
R.version.string <- R.version$version.string
## NOTA BENE: options() for non-base package functionality are in places like
## --------- ../utils/R/zzz.R
options(keep.source = interactive())
options(warn = 0)
# options(repos = c(CRAN="@CRAN@"))
# options(BIOC = "http://www.bioconductor.org")
## setting from an env variable added in 4.0.2
local({to <- as.integer(Sys.getenv("R_DEFAULT_INTERNET_TIMEOUT", 60))
if (is.na(to) || to <= 0) to <- 60L
options(timeout = to)
})
options(encoding = "native.enc")
options(show.error.messages = TRUE)
## keep in sync with PrintDefaults() in ../../main/print.c :
options(scipen = 0)
options(max.print = 99999)# max. #{entries} in internal printMatrix()
options(add.smooth = TRUE)# currently only used in 'plot.lm'
if(isFALSE(as.logical(Sys.getenv("_R_OPTIONS_STRINGS_AS_FACTORS_",
"FALSE")))) {
options(stringsAsFactors = FALSE)
} else {
options(stringsAsFactors = TRUE)
}
if(!interactive() && is.null(getOption("showErrorCalls")))
options(showErrorCalls = TRUE)
local({dp <- Sys.getenv("R_DEFAULT_PACKAGES")
if(identical(dp, "")) ## it fact methods is done first
dp <- c("datasets", "utils", "grDevices", "graphics",
"stats", "methods")
else if(identical(dp, "NULL")) dp <- character(0)
else dp <- strsplit(dp, ",")[[1]]
dp <- sub("[[:blank:]]*([[:alnum:]]+)", "\\1", dp) # strip whitespace
options(defaultPackages = dp)
})
## Expand R_LIBS_* environment variables.
Sys.setenv(R_LIBS_SITE =
.expand_R_libs_env_var(Sys.getenv("R_LIBS_SITE")))
Sys.setenv(R_LIBS_USER =
.expand_R_libs_env_var(Sys.getenv("R_LIBS_USER")))
local({
if(nzchar(tl <- Sys.getenv("R_SESSION_TIME_LIMIT_CPU")))
setSessionTimeLimit(cpu = tl)
if(nzchar(tl <- Sys.getenv("R_SESSION_TIME_LIMIT_ELAPSED")))
setSessionTimeLimit(elapsed = tl)
})
.First.sys <- function()
{
for(pkg in getOption("defaultPackages")) {
res <- require(pkg, quietly = TRUE, warn.conflicts = FALSE,
character.only = TRUE)
if(!res)
warning(gettextf('package %s in options("defaultPackages") was not found', sQuote(pkg)),
call. = FALSE, domain = NA)
}
}
## called at C level in the startup process prior to .First.sys
.OptRequireMethods <- function()
{
pkg <- "methods" # done this way to avoid R CMD check warning
if(pkg %in% getOption("defaultPackages"))
if(!require(pkg, quietly = TRUE, warn.conflicts = FALSE,
character.only = TRUE))
warning('package "methods" in options("defaultPackages") was not found',
call. = FALSE)
}
if(nzchar(Sys.getenv("R_BATCH"))) {
.Last.sys <- function()
{
cat("> proc.time()\n")
print(proc.time())
}
## avoid passing on to spawned R processes
## A system has been reported without Sys.unsetenv, so try this
try(Sys.setenv(R_BATCH=""))
}
local({
if(nzchar(rv <- Sys.getenv("_R_RNG_VERSION_")))
suppressWarnings(RNGversion(rv))
})
.sys.timezone <- NA_character_
.First <- NULL
.Last <- NULL
###-*- R -*- Unix Specific ----
.Library <- file.path(R.home(), "library")
.Library.site <- Sys.getenv("R_LIBS_SITE")
.Library.site <- if(!nzchar(.Library.site)) file.path(R.home(), "site-library") else unlist(strsplit(.Library.site, ":"))
.Library.site <- .Library.site[file.exists(.Library.site)]
invisible(.libPaths(c(unlist(strsplit(Sys.getenv("R_LIBS"), ":")),
unlist(strsplit(Sys.getenv("R_LIBS_USER"), ":")
))))
local({
popath <- Sys.getenv("R_TRANSLATIONS", "")
if(!nzchar(popath)) {
paths <- file.path(.libPaths(), "translations", "DESCRIPTION")
popath <- dirname(paths[file.exists(paths)][1])
}
bindtextdomain("R", popath)
bindtextdomain("R-base", popath)
assign(".popath", popath, .BaseNamespaceEnv)
})
local({
## we distinguish between R_PAPERSIZE as set by the user and by configure
papersize <- Sys.getenv("R_PAPERSIZE_USER")
if(!nchar(papersize)) {
lcpaper <- Sys.getlocale("LC_PAPER") # might be null: OK as nchar is 0
papersize <- if(nchar(lcpaper))
if(length(grep("(_US|_CA)", lcpaper))) "letter" else "a4"
else Sys.getenv("R_PAPERSIZE")
}
options(papersize = papersize,
printcmd = Sys.getenv("R_PRINTCMD"),
dvipscmd = Sys.getenv("DVIPS", "dvips"),
texi2dvi = Sys.getenv("R_TEXI2DVICMD"),
browser = Sys.getenv("R_BROWSER"),
pager = file.path(R.home(), "bin", "pager"),
pdfviewer = Sys.getenv("R_PDFVIEWER"),
useFancyQuotes = TRUE)
})
## non standard settings for the R.app GUI of the macOS port
if(.Platform$GUI == "AQUA") {
## this is set to let RAqua use both X11 device and X11/TclTk
if (Sys.getenv("DISPLAY") == "")
Sys.setenv("DISPLAY" = ":0")
## this is to allow gfortran compiler to work
Sys.setenv("PATH" = paste(Sys.getenv("PATH"),":/usr/local/bin",sep = ""))
}## end "Aqua"
## de-dupe the environment on macOS (bug in Yosemite which affects things like PATH)
if (grepl("^darwin", R.version$os)) local({
## we have to de-dupe one at a time and re-check since the bug affects how
## environment modifications propagate
while(length(dupes <- names(Sys.getenv())[table(names(Sys.getenv())) > 1])) {
env <- dupes[1]
value <- Sys.getenv(env)
Sys.unsetenv(env) ## removes the dupes, good
.Internal(Sys.setenv(env, value)) ## wrapper requries named vector, a pain, hence internal
}
})
local({
tests_startup <- Sys.getenv("R_TESTS")
if(nzchar(tests_startup)) source(tests_startup)
})
R Site Profile: /usr/lib64/R/etc/Rprofile.site
--------------------------------------------------
(File does not exist)
R User Profile: /home/rafaczd/.Rprofile
--------------------------------------------------
(File does not exist)
R Site Environ: /usr/lib64/R/etc/Renviron.site
--------------------------------------------------
(File does not exist)
R User Environ: /home/rafaczd/.Renviron
--------------------------------------------------
(File does not exist)
R Temporary Directory
--------------------------------------------------
/tmp/Rtmp2cpcQ0
Files in R Temporary Directory
--------------------------------------------------
rs-graphics-bbff6799-db56-44f6-963e-255bfb78d49c
Log file: /home/rafaczd/.local/share/rstudio/log/rdesktop.log
--------------------------------------------------
2022-03-04T10:30:29.893093Z [rdesktop] ERROR system error 2 (No such file or directory) [path: /home/rafaczd/.r/crash-handler.conf, target-path: /home/rafaczd/.config/rstudio/crash-handler.conf]; OCCURRED AT rstudio::core::Error rstudio::core::FilePath::copy(const rstudio::core::FilePath&, bool) const src/cpp/shared_core/FilePath.cpp:808; LOGGED FROM: void rstudio::core::crash_handler::{anonymous}::readOptions() src/cpp/core/CrashHandler.cpp:138
Log file: /home/rafaczd/.local/share/rstudio/log/rsession-rafaczd.log
--------------------------------------------------
2022-03-04T10:24:48.834762Z [rsession-rafaczd] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() src/cpp/session/SessionMain.cpp:1431
2022-03-04T10:24:48.834762Z [rsession-rafaczd] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() src/cpp/session/SessionMain.cpp:1431
2022-03-04T10:29:42.555927Z [rsession-rafaczd] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() src/cpp/session/SessionMain.cpp:1431
2022-03-04T10:29:42.555927Z [rsession-rafaczd] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() src/cpp/session/SessionMain.cpp:1431
2022-03-04T10:30:54.478122Z [rsession-rafaczd] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() src/cpp/session/SessionMain.cpp:1431
2022-03-04T10:30:54.478122Z [rsession-rafaczd] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() src/cpp/session/SessionMain.cpp:1431
2022-03-04T10:34:10.933422Z [rsession-rafaczd] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() src/cpp/session/SessionMain.cpp:1431
2022-03-04T10:34:10.933422Z [rsession-rafaczd] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() src/cpp/session/SessionMain.cpp:1431
2022-03-04T10:41:33.699405Z [rsession-rafaczd] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() src/cpp/session/SessionMain.cpp:1431
2022-03-04T10:41:33.699405Z [rsession-rafaczd] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() src/cpp/session/SessionMain.cpp:1431
2022-03-04T10:43:45.687659Z [rsession-rafaczd] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() src/cpp/session/SessionMain.cpp:1431
2022-03-04T10:43:45.687659Z [rsession-rafaczd] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() src/cpp/session/SessionMain.cpp:1431
2022-03-04T10:44:19.339026Z [rsession-rafaczd] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() src/cpp/session/SessionMain.cpp:1431
2022-03-04T10:44:19.339026Z [rsession-rafaczd] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() src/cpp/session/SessionMain.cpp:1431
User prefs: /home/rafaczd/.config/rstudio/rstudio-prefs.json
--------------------------------------------------
(Not Found)
System prefs: /etc/xdg/rstudio/rstudio-prefs.json
--------------------------------------------------
(Not Found)
User state: /home/rafaczd/.local/share/rstudio/rstudio-desktop.json
--------------------------------------------------
{
"context_id": "CBCE8D3B",
"error_handler_type": "traceback",
"theme": {
"name": "Textmate (default)",
"url": "theme/default/textmate.rstheme",
"isDark": false
}
}
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