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EmilioGarciaMoran/efetch.sh

Created April 8, 2020 20:01
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bash oneliner to fetch genomes in fasta format from Genbank
Raw
efetch.sh
#!/bin/bash
epost -input corona/GenBankGenomes.lst |efetch -db nucleotide -format fasta>corona/GenBankGenomes.fasta
#GenBankGenomes.lst is a text file with the accession numbers for every genome (one per line). It is
#easy to build from Entrez-NCBI web interface
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