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t-SNE site map [UNLISTED]
license: mit

Working on Visionscarto.net sitemap.

From tf/idf on articles keywords, compute a cosine similarity, feed that to t-SNE, k-means coloring, extraction of main term(s) per k-means center.

Original work by Philippe Rivière for Visionscarto.net. Comments and variants very welcome!

Forked from Fil's block: t-SNE with Levenshtein distances

<!DOCTYPE html>
<head>
<meta charset="utf-8">
<script src="https://d3js.org/d3.v4.min.js"></script>
<style>
body {
margin: 0;
position: fixed;
top: 0;
right: 0;
bottom: 0;
left: 0;
font-family: monospace;
}
</style>
</head>
<body>
<script>
const width = 960,
height = 500,
margin = { top: 20, bottom: 20, left: 120, right: 120 },
scalepop = d3.scalePow().exponent(1/2.5).domain([1, 10000]).range([0, 15]),
scalepop2 = d3.scaleLog().domain([1, 1000]).range([0, 20]),
scalecountry = d3.scaleOrdinal(d3.merge([d3.schemeCategory10, d3.schemeCategory20c])),
centerx = d3.scaleLinear()
.range([margin.left, width - margin.right]),
centery = d3.scaleLinear()
.range([margin.top, height - margin.bottom]);
const voronoi = d3.voronoi();
let tfidf;
d3.json('plan.json', function (articles) {
const data = articles
.map((d, i) => {
return {
lon: Math.random(),
lat: Math.random(),
name: d['title'].replace(/&#\d+;/g, '’'),
props: d3.set(d3.merge([ [ "trad" + (d.trad || d.id) ], d.authors, d.tags ])).values(),
//props: d['title'].substring(0,1),
r: scalepop(+d['views']) + scalepop2(+d['pop']+1),
p: scalepop2(+d['popularity']),
color: scalecountry(''+d.authors)
};
})
.slice(0,400);
/*
const canvas = d3.select("body").append("canvas")
.attr("width", width)
.attr("height", height);
*/
const svg = d3.select("body").append("svg")
.attr("width", width)
.attr("height", height);
const lines = svg.append('g');
const garticles = svg.append('g');
const gmeans = svg.append('g');
// pos is the array of positions that will be updated by the tsne worker
// start with the geographic coordinates as is (plate-carrée)
// random or [0,0] is fine too
let pos = data.map(d => [Math.random(), Math.random()]);
var K = 20,
centers = d3.range(K).map(i => [0,0]),
colorscale = d3.scaleOrdinal(d3.schemeCategory20c);
let links = [];
const forcetsne = d3.forceSimulation(
data.map(d => (d.x = width / 2, d.y = height / 2, d))
)
//.stop()
.alphaDecay(0.001)
.alpha(0.1)
.force('tsne', function (alpha) {
centerx.domain(d3.extent(pos.map(d => d[0])));
centery.domain(d3.extent(pos.map(d => d[1])));
data.forEach((d, i) => {
d.x += alpha * (centerx(pos[i][0]) - d.x);
d.y += alpha * (centery(pos[i][1]) - d.y);
});
})
.force('collide', d3.forceCollide().radius(d => 1 * (1.5 + d.r)))
.force('kmeans', function(){
// a central point to re-init empty groups
var m = [d3.mean(centers.map(d => d[0] || 0)),
d3.mean(centers.map(d => d[1] || 0))];
// the order is important: move the centers before re-making the groups
// so that the centers follow the general movement and keep "their"
// points, instead of having points pass through them
// 1. move K-centers towards the barycenter of their group
centers.forEach((c,i) => {
c[0] = d3.mean(pos.filter((d,j) => data[j].group == i).map(d => d[0])) || m[0];
c[1] = d3.mean(pos.filter((d,j) => data[j].group == i).map(d => d[1])) || m[1];
});
// 2. group each point according to its closest K-center
data.forEach((d,i) => {
d.group = d3.scan(centers.map(c => {
var dx = pos[i][0] - c[0],
dy = pos[i][1] - c[1];
return (dx*dx + dy*dy);
}));
});
}
)
.on('tick', function () {
// drawcanvas(canvas, data);
drawsvg(garticles, data);
drawlines(lines, links);
drawgmeans(gmeans, centers);
});
function drawcanvas(canvas, nodes) {
let context = canvas.node().getContext("2d");
context.clearRect(0, 0, width, width);
for (var i = 0, n = nodes.length; i < n; ++i) {
var node = nodes[i];
context.beginPath();
context.moveTo(node.x, node.y);
context.arc(node.x, node.y, node.r, 0, 2 * Math.PI);
context.lineWidth = 0.5;
context.fillStyle = colorscale(node.group);
context.fill();
}
}
function mainterms(i) {
if (!tfidf) return;
var articles = data.filter(d => d.group === i), v = null;
if (articles.length ===0) return '';
var tags = d3.merge(articles.map(d => d.props))
.filter(d => {
return !d.match(/^trad/) && !d.match(/^[A-Z]/);
});
var freq = {}, max = 0;
tags.forEach(d => {
freq[d] = (freq[d]||0) + tfidf[d];
if (freq[d] > max) {
v = d;
max = freq[d];
}
});
return v;
}
function drawgmeans(svg, centers){
const means = svg.selectAll('text')
.data(centers);
var enter = means.enter()
.append('text')
.attr('stroke', 'black')
.attr('text-anchor', 'middle');
means.exit().remove();
means.merge(enter)
.attr('x', d => centerx(d[0]))
.attr('y', d => centery(d[1]))
.text((d,i) => mainterms(i));
}
function drawlines(svg, links){
const lines = svg.selectAll('line')
.data(links, l => l.index);
var enter = lines.enter()
.append('line');
lines.exit().remove();
lines.merge(enter)
.attr('x1', d => d.target.x)
.attr('x2', d => d.source.x)
.attr('y1', d => d.target.y)
.attr('y2', d => d.source.y)
.attr('stroke', 'black');
}
function drawsvg(svg, nodes) {
const g = svg.selectAll('g.city')
.data(nodes);
var enter = g.enter().append('g').classed('city', true);
enter.append('circle')
.attr('r', d => d.r)
//.attr('fill', d => d.color)
.append('title')
.text(d => d.name);
enter
.filter(d => d.r > 7)
.append('text')
.attr('fill', 'white')
.style('font-size', d => d.r > 9 ? '12px' : '9px')
.attr('text-anchor', 'middle')
.attr('dominant-baseline', 'middle')
.attr('pointer-events', 'none')
.text(d => d.name.replace(/^(L([ea] |)|À |Un )/, '').substring(0,d.r/4));
g.merge(enter)
.attr('fill', d => /*d.color ||*/ colorscale(d.group))
.attr('transform', d => `translate(${d.x},${d.y})`);
}
d3.queue()
.defer(d3.text, 'tsne.js')
.defer(d3.text, 'https://unpkg.com/d3-geo')
.defer(d3.text, 'worker.js')
.awaitAll(function (err, scripts) {
const worker = new Worker(
window.URL.createObjectURL(
new Blob(scripts, {
type: "text/javascript"
})
)
);
worker.postMessage({
maxIter: 10,
dim: 2,
perplexity: 100.0,
data: data
});
worker.onmessage = function (e) {
if (e.data.log) console.log.apply(this, e.data.log);
if (e.data.tfidf) tfidf = e.data.tfidf;
//if (isNaN(e.data.cost)) console.log('isNaN');
if (e.data.pos) {
pos = e.data.pos;
let sc = d3.max(pos.map(d => d[0]))
let diagram = voronoi(pos.map((d,i) => (d.index = i, d[0]/=sc, d[1]/=sc, d)));
links = urquhart(diagram, (a,b) =>
(a[0]-b[0])*(a[0]-b[0]) + (a[1]-b[1])*(a[1]-b[1])
)
.map(d => {
d.source = data[d.source.index];
d.target = data[d.target.index];
return d;
});
/*
forcetsne.force('links', forcelinks.links(links.map(d => {
d.source = data[d.source.index];
d.target = data[d.target.index];
return d;
})));
*/
}
if (e.data.done && e.data.done < 10000 && e.data.cost > 1e-2) {
worker.postMessage({
maxIter: e.data.done + 10,
});
}
//console.log('pos', pos);
};
});
});
function urquhart(diagram, distance) {
var urquhart = d3.map();
diagram.links()
.forEach(function (link) {
var v = d3.extent([link.source.index, link.target.index]);
urquhart.set(v, link);
});
urquhart._remove = [];
diagram.triangles()
.forEach(function (t) {
var l = 0,
length = 0,
i = -1,
v;
for (var j = 0; j < 3; j++) {
var a = t[j],
b = t[(j + 1) % 3];
v = d3.extent([a.index, b.index]);
if (!distance) {
length = (a.x - b.x) * (a.x - b.x) + (a.y - b.y) * (a.y - b.y);
} else {
length = distance(a, b);
}
if (length >= l) {
l = length;
i = v;
}
}
urquhart._remove.push(i);
});
urquhart._remove.forEach(function (i) {
if (urquhart.has(i)) urquhart.remove(i);
});
return urquhart.values();
}
</script>
</body>
[
{
"id": 190,
"title": "Qui fabrique les armes, et qui les ach\u00e8te\u00a0?",
"url": "qui-fabrique-les-armes-et-qui-les-achete",
"date": "2015-11-18T18:48:16Z",
"rub": "7",
"trad": 190,
"pop": 63,
"views": "34282",
"authors": ["Philippe Rekacewicz"],
"affdate": "18 novembre 2015",
"tags": ["armement","conflits","guerre","russie","etats-unis","chine","france","europe","ressources pedagogiques"]
},
{
"id": 94,
"title": "Index du site",
"url": "sitemap",
"date": "2014-04-01T06:34:00Z",
"rub": "1",
"pop": 63,
"views": "17503",
"authors": [],
"affdate": "1er avril 2014",
"tags": []
},
{
"id": 9,
"title": "Mourir aux portes de l&#8217;Europe",
"url": "mourir-aux-portes-de-l-europe",
"date": "2014-04-27T22:17:50Z",
"rub": "3",
"trad": 9,
"pop": 9,
"views": "11272",
"authors": ["Philippe Rekacewicz"],
"affdate": "28 avril 2014",
"tags": ["migrations","asile","frontieres","mer mediterranee","mediterranee","mourir en mer"]
},
{
"id": 100,
"title": "Cartographies traverses, des espaces o\u00f9 l&#8217;on ne finit jamais d&#8217;arriver",
"url": "cartographies-traverses",
"date": "2015-02-27T10:40:16Z",
"rub": "3",
"trad": 100,
"pop": 18,
"views": "9562",
"authors": ["Sarah Mekdjian", "Anne-Laure Amilhat Szary"],
"affdate": "27 f\u00e9vrier 2015",
"tags": ["cartographie","cartographie sensible","cartographie participative","migrations","frontieres"]
},
{
"id": 125,
"title": "Terrorisme, insurrection ou r\u00e9sistance\u00a0: cartographier et nommer \u00ab\u00a0l&#8217;internationale djihadiste\u00a0\u00bb",
"url": "djihadisme-international",
"date": "2015-06-08T04:00:00Z",
"rub": "3",
"trad": 125,
"pop": 6,
"views": "8849",
"authors": ["Philippe Rekacewicz"],
"affdate": "8 juin 2015",
"tags": ["djihadisme","etat islamique","daesh","ei","is","isis","al-qaida","insurrection","resistance","terrorisme"]
},
{
"id": 83,
"title": "Les nouvelles couleurs de Port-au-Prince",
"url": "couleurs-de-port-au-prince",
"date": "2014-10-24T09:00:00Z",
"rub": "3",
"pop": 3,
"views": "8210",
"authors": ["Romain Cruse", "Pierre Morel"],
"affdate": "24 octobre 2014",
"tags": ["haiti","richesse","pauvrete","caraibes"]
},
{
"id": 240,
"title": "Voyager sans visa",
"url": "voyager-sans-visa",
"date": "2016-02-22T11:13:37Z",
"rub": "3",
"pop": 5,
"views": "8197",
"authors": ["Philippe Rivi\u00e8re"],
"affdate": "22 f\u00e9vrier 2016",
"tags": ["frontieres","migrations","voyage","tourisme","passeport","visas","utopie","geopolitique","passeport","nation","visas","libre circulation","murs","cartographie","visualisation","frontieres","migrations","geopolitique"]
},
{
"id": 107,
"title": "Viols en temps de guerre, le silence et l&#8217;impunit\u00e9",
"url": "viols-en-temps-de-guerre",
"date": "2015-08-04T08:02:09Z",
"rub": "3",
"pop": 9,
"views": "7648",
"authors": ["Agn\u00e8s Stienne"],
"affdate": "4 ao\u00fbt 2015",
"tags": ["viols","culture du viol","droit des femmes","guerre","conventions internationales","conflits armes","femmes","filles"]
},
{
"id": 223,
"title": "Les cinquante cartes de Charles-Joseph Minard ",
"url": "charles-joseph-minard-cinquante-cartes",
"date": "2016-03-03T06:53:27Z",
"rub": "3",
"pop": 6,
"views": "6872",
"authors": ["Sandra Rendgen"],
"affdate": "3 mars 2016",
"tags": ["visualisation","cartographie","statistique","graphique","semiologie graphique","precurseurs","charles-joseph minard"]
},
{
"id": 46,
"title": "Le transport maritime et les rivages de la mer",
"url": "transport-maritime-rivages-de-la-mer",
"date": "2014-09-01T13:41:03Z",
"rub": "3",
"pop": 8,
"views": "6839",
"authors": ["Jean-Marie Miossec"],
"affdate": "1er septembre 2014",
"tags": ["transport","transport maritime","mer","oceans","europe","asie","conteneurs"]
},
{
"id": 98,
"title": "Bob Marley entre deux mondes",
"url": "bob-marley-entre-deux-mondes",
"date": "2015-02-05T23:22:20Z",
"rub": "3",
"pop": 15,
"views": "6514",
"authors": ["Romain Cruse", "Romain Philippon"],
"affdate": "6 f\u00e9vrier 2015",
"tags": ["musique","reggae","jamaique","caraibes"]
},
{
"id": 202,
"title": "Sahel\u00a0: la guerre des sables, par dessus les fronti\u00e8res",
"url": "sahel-la-guerre-des-sables",
"date": "2016-01-22T11:37:05Z",
"rub": "3",
"pop": 5,
"views": "6354",
"authors": ["Philippe Leymarie"],
"affdate": "22 janvier 2016",
"tags": ["sahel","mali","niger","guerres","conflits","afrique occidentale","france","armee","nigeria","boko haram"]
},
{
"id": 1,
"title": "\u00c0 propos de Visionscarto",
"url": "a-propos",
"date": "2014-04-01T08:50:28Z",
"rub": "1",
"pop": 4,
"views": "6259",
"authors": [],
"affdate": "1er avril 2014",
"tags": []
},
{
"id": 274,
"title": "Lieux de pouvoir \u00e0 Paris",
"url": "lieux-de-pouvoir-a-paris",
"date": "2016-04-23T18:44:40Z",
"rub": "7",
"pop": 3,
"views": "5665",
"authors": ["Agn\u00e8s Stienne"],
"affdate": "23 avril 2016",
"tags": ["paris","france","territoire","oligarchie"]
},
{
"id": 78,
"title": "Accaparement de terres\u00a0: la Chine, l&#8217;Inde et les \u00c9tats-Unis aussi...",
"url": "accaparement-chine-inde-etats-unis",
"date": "2014-10-06T09:35:35Z",
"rub": "3",
"pop": 6,
"views": "5655",
"authors": ["Agn\u00e8s Stienne"],
"affdate": "6 octobre 2014",
"tags": ["accaparement","agriculture","chine","inde","etats-unis","land grabbing"]
},
{
"id": 129,
"title": "Dans la r\u00e9gion de l&#8217;Evros, un mur inutile sur la fronti\u00e8re gr\u00e9co-turque",
"url": "evros-mur-inutile",
"date": "2015-06-25T06:09:40Z",
"rub": "3",
"pop": 21,
"views": "5492",
"authors": ["Cristina Del Biaggio", "Alberto Campi"],
"affdate": "25 juin 2015",
"tags": ["migrations","asile","migrants","refugies","grece","turquie","evros","murs","frontieres","barriere frontaliere"]
},
{
"id": 79,
"title": "G\u00e9ographie de l&#8217;enfance",
"url": "geographie-de-l-enfance",
"date": "2014-10-10T14:25:36Z",
"rub": "3",
"pop": 14,
"views": "5475",
"authors": ["Philippe Rekacewicz"],
"affdate": "10 octobre 2014",
"tags": ["enfance","travail","sante","inegalites","developpement","anamorphose","enfants","demographie","travail des enfants","prix nobel"]
},
{
"id": 161,
"title": "\u00ab\u00a0Dessine-moi une \u00eele\u00a0!\u00a0\u00bb",
"url": "dessine-moi-une-ile",
"date": "2015-10-02T18:50:46Z",
"rub": "3",
"pop": 10,
"views": "5475",
"authors": ["Fran\u00e7ois Arnal"],
"affdate": "2 octobre 2015",
"tags": ["imaginaire","geographie","representations","paysage","cartographie","carte mentale","insularite","ileite"]
},
{
"id": 148,
"title": "\u00c0 Ath\u00e8nes, (sur)vivre dans la terreur",
"url": "a-athenes-survivre",
"date": "2015-08-31T06:06:29Z",
"rub": "3",
"pop": 9,
"views": "5162",
"authors": ["Cristina Del Biaggio", "Alberto Campi"],
"affdate": "31 ao\u00fbt 2015",
"tags": ["migrations","asile","migrants","refugies","grece","segregation","racisme","extreme droite","athenes","petrou ralli"]
},
{
"id": 97,
"title": "No\u00ebl \u00e0 Bethl\u00e9em, au pied du mur",
"url": "noel-a-bethleem",
"date": "2014-12-24T07:18:58Z",
"rub": "3",
"pop": 29,
"views": "4668",
"authors": ["Elisabeth Vallet"],
"affdate": "24 d\u00e9cembre 2014",
"tags": ["murs","frontieres","palestine","israel","occupation","bethleem","barriere frontaliere"]
},
{
"id": 82,
"title": "Le Daghestan, l\u2019islam et les soviets",
"url": "le-daghestan-l-islam-et-les-soviets",
"date": "2014-10-28T09:35:59Z",
"rub": "3",
"pop": 22,
"views": "4650",
"authors": ["Fr\u00e9d\u00e9rique Longuet-Marx"],
"affdate": "28 octobre 2014",
"tags": ["daghestan","caucase","russie","caucase-nord","islam","documentaire","soufisme","salafisme"]
},
{
"id": 147,
"title": "L&#8217;arc des r\u00e9fugi\u00e9s en 2014",
"url": "l-arc-des-refugies-en-2014",
"date": "2015-07-11T10:16:18Z",
"rub": "7",
"trad": 147,
"pop": 3,
"views": "4556",
"authors": ["Philippe Rekacewicz"],
"affdate": "11 juillet 2015",
"tags": ["refugies","droits humains","discrimination","asile","guerre","conflits"]
},
{
"id": 276,
"title": "Le sol, ce bien commun o\u00f9 la vie prend\u00a0racine",
"url": "le-sol-ce-bien-commun",
"date": "2016-06-01T12:53:42Z",
"rub": "3",
"pop": 14,
"views": "4306",
"authors": ["Agn\u00e8s Stienne"],
"affdate": "1er juin 2016",
"tags": ["sols","agriculture","degradations","pollutions"]
},
{
"id": 155,
"title": "Traverser la fronti\u00e8re et arriver en Bulgarie\u00a0: paroles de r\u00e9fugi\u00e9s",
"url": "refugies-bulgarie",
"date": "2015-09-21T09:49:28Z",
"rub": "3",
"pop": 7,
"views": "4087",
"authors": ["Stefania Summermatter"],
"affdate": "21 septembre 2015",
"tags": ["refugies","migrations","bulgarie","turquie","syrie","migrants","asile"]
},
{
"id": 195,
"title": "Irak\u00a0: apr\u00e8s les feux de la guerre, les cancers",
"url": "irak-apres-les-feux-de-la-guerre",
"date": "2015-12-05T16:04:39Z",
"rub": "3",
"pop": 3,
"views": "4042",
"authors": ["Agn\u00e8s Stienne"],
"affdate": "5 d\u00e9cembre 2015",
"tags": ["irak","sante","cancer","natalite","guerre","armes","pollution"]
},
{
"id": 191,
"title": "Who is selling arms, and who buys them?",
"url": "who-is-selling-arms-and-who-buys",
"date": "2015-11-24T09:08:58Z",
"rub": "7",
"trad": 190,
"pop": 3,
"views": "3792",
"authors": ["Philippe Rekacewicz"],
"affdate": "24 November 2015",
"tags": ["armament","war","conflicts","russia","united states","france","china","russia"]
},
{
"id": 163,
"title": "\u2026 et l&#8217;Arctique deviendra un oc\u00e9an",
"url": "et-l-arctique-deviendra-un-ocean",
"date": "2015-10-11T15:47:57Z",
"rub": "3",
"pop": 5,
"views": "3640",
"authors": ["Miyase Christensen", "Anika E Nilsson", "Nina Wormbs\u2028"],
"affdate": "11 octobre 2015",
"tags": ["arctique","climat","mer","ocean arctique","anthropocene","giec","frontieres"]
},
{
"id": 87,
"title": "N\u00e8gres, Noirs... Du bon usage des mots en cartographie",
"url": "negres-noirs-du-bon-usage-des-mots",
"date": "2014-11-19T09:53:59Z",
"rub": "3",
"pop": 3,
"views": "3631",
"authors": ["Philippe Rekacewicz", "Peggy Pierrot"],
"affdate": "19 novembre 2014",
"tags": ["racisme","terminologie","histoire","negritude","cartographie","geographie","colonisation"]
},
{
"id": 40,
"title": "L&#8217;Europe \u00e0 l&#8217;assaut des terres agricoles mondiales",
"url": "accaparement-des-terres",
"date": "2014-08-06T13:02:01Z",
"rub": "3",
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