Georgios Koutsovoulos GDKO

## Euk-Ecoli.md

      
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              March 1, 2016 11:26
            
              
                Eukaryotic gene prediction on a bacterial genome
              
          
    The goal is to check whether abinitio gene finders with eukaryotic parameters will predict genes with "real" introns in bacterial genomes.
Download E. coli from NCBI

http://www.ncbi.nlm.nih.gov/nuccore/296142109
Rename Header to >E_coli
Run CEGMA


## CGP-Pipeline.md

      
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              April 2, 2020 16:42
            
              
                CGP Pipeline
              
          
    Preface

This is my recommended pipeline for assembly and annotation of small eukaryotic genomes (50 - 500 Mb).
All small scripts are available at CGP-scripts. For the programs a link is provided.
Please cite if you found the pipeline useful!


## axelrod_pso.md

      
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              July 14, 2017 21:03
            
              
                Optimising the LookerUp strategy for an Iterated Prisoner's Dilemma tournament
              
          
    Preface

I would suggest before continuing to read the excellent blog post by Martin Jones.
The LookerUp strategy

The LookerUp strategy uses a 64-key lookup table (keys are 3-tuples consisting of the opponent's starting actions, the opponent's recent actions, and our recent action) to decide whether to cooperate (C) or defect (D). The actions for each key were generated using an evolutionary algorithm.
The idea