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Genevieve Buckley GenevieveBuckley

  • Monash University
  • Melbourne
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@GenevieveBuckley
GenevieveBuckley / skimage_3d_compatibility.py
Last active Apr 16, 2019 — forked from emmanuelle/skimage_3d_compatibility.py
Inspect which functions of scikit-image are compatible with 3-D arrays.
View skimage_3d_compatibility.py
import numpy as np
import inspect
from skimage import exposure, feature, filters, measure, morphology, \
restoration, segmentation, transform, util
def only_one_nondefault(args):
"""
Returns True if the function has only one non-keyword parameter,
False otherwise.
@GenevieveBuckley
GenevieveBuckley / logfile.py
Created Apr 15, 2019
Log all uncaught exceptions to file with sys.excepthook
View logfile.py
import os
import logging
import sys
import time
import traceback
from mypackage import __version__
def _exception_handler(error_type, error_value, error_traceback):
@GenevieveBuckley
GenevieveBuckley / link_with_spaces.rst
Created Apr 3, 2019
Link with spaces in restructured text (.rst) files
View link_with_spaces.rst
View git-tag-delete-local-and-remote.sh
# delete local tag '12345'
git tag -d 12345
# delete remote tag '12345' (eg, GitHub version too)
git push origin :refs/tags/12345
# alternative approach
git push --delete origin tagName
git tag -d tagName
@GenevieveBuckley
GenevieveBuckley / settings.json
Last active Mar 25, 2019
Visual Studio Code settings.json config file
View settings.json
{
"terminal.integrated.shell.windows": "C:\\Windows\\System32\\cmd.exe",
"editor.rulers": [
80
],
"autoDocstring.docstringFormat": "numpy",
"python.linting.pylintEnabled": false,
"python.linting.flake8Enabled": true,
"window.zoomLevel": 0,
"python.formatting.provider": "autopep8",
@GenevieveBuckley
GenevieveBuckley / pytest.ini
Last active Apr 4, 2019
Pytest configuration file
View pytest.ini
[pytest]
addopts = --cov-report xml:cov.xml --cov-report term-missing --cov=mypackagename
@GenevieveBuckley
GenevieveBuckley / user_input.py
Created Mar 15, 2019
User input in python using a while loop
View user_input.py
response_yes = ['yes', 'y']
response_no = ['no', 'n']
response_cancel = ['quit', 'q', 'exit', 'cancel']
known_responses = response_yes + response_no + response_cancel
user_response = ''
while user_response.lower() not in known_responses:
user_response = input("Please input a value, or enter 'quit': ")
print(user_response)
@GenevieveBuckley
GenevieveBuckley / pip_install_directly_from_github
Last active Apr 24, 2019
pip install code directly from a github repository
View pip_install_directly_from_github
# pip install code directly from github with:
pip install git+https://github.com/path/to/repo.git
# Note: the repository must include setup.py file to be pip installable.
# Presumably, you can also specify a specific repository branch with:
pip install git+https://github.com/path/to/repo.git@branchname
View markdown-details-collapsible.md

A collapsible section with markdown

Click to expand!

Heading

  1. A numbered
  2. list
    • With some
    • Sub bullets
@GenevieveBuckley
GenevieveBuckley / quick_pickle.py
Created Jan 16, 2019
Pickle AdornedImage objects
View quick_pickle.py
import pickle
from autoscript_sdb_microscope_client import SdbMicroscopeClient
from autoscript_sdb_microscope_client.enumerations import *
from autoscript_sdb_microscope_client.structures import *
microscope = SdbMicroscopeClient()
microscope.connect()
object_to_pickle = microscope.imaging.get_image()
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