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JWDebler / fast5 demultiplex by barcode
Created January 6, 2022 07:18
fast5 demultiplex by barcode
pip3 install ont-fast5-api
cat sequencing_summary.txt | cut -f 21 | grep barcode[0-9] | sort | uniq > barcodes.log
while read -r barcode
do
head -n 1 sequencing_summary.txt > $barcode.txt
cat sequencing_summary.txt | grep $barcode >> $barcode.txt
for f in *.txt
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