Preparing sequences for SCWRL and then calling SCWRL on them

allmuts_*.sh

#!/bin/bash

for i in R178H R178C P183L D207E S293I F434L L451V E482K L484Q E506D; do
        perl prepForSQRWL2.pl -i 2gjxA_sequence -mut $i > SCWRL_$i.sequence
done

for i in R178H R178C P183L D207E S293I F434L L451V E482K L484Q E506D; do
        /opt/SS12-Practical/scwrl4/Scwrl4 -s SCWRL_$i.sequence -i ../2gjxA_secondD.pdb -o SCWRL_$i.pdb &>> SCWRL.log
done

allmuts_.sh

#!/bin/bash

for i in R178H R178C P182L D207E S293I F434L L451V E482K L484Q E506D; do
        perl prepForSQRWL2.pl -i 2gjxA_sequence -mut $i > SCWRL_$i.sequence
done

for i in R178H R178C P182L D207E S293I F434L L451V E482K L484Q E506D; do
        /opt/SS12-Practical/scwrl4/Scwrl4 -s SCWRL_$i.sequence -i ../2gjxA_secondD.pdb -o SCWRL_$i.pdb &>> SCWRL.log
done

prepareForSQRWL2.pl can be found here: https://gist.github.com/2966806