Lestropie

#include "command.h"
#include "image.h"

#include "dwi/directions/set.h"
#include "dwi/tractography/SIFT/model_base.h"


using namespace MR;
using namespace App;

Lestropie

/* Copyright (c) 2008-2017 the MRtrix3 contributors.
 *
 * This Source Code Form is subject to the terms of the Mozilla Public
 * License, v. 2.0. If a copy of the MPL was not distributed with this
 * file, you can obtain one at http://mozilla.org/MPL/2.0/.
 *
 * MRtrix is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty
 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
 *

Lestropie

#!/usr/bin/env python
import math, os, sys



def usage(cmdline): #pylint: disable=unused-variable
  cmdline.set_author('Robert E. Smith (robert.smith@florey.edu.au)')
  cmdline.set_synopsis('Generate diffusion gradient tables in the DVS format for Siemens scanners')
  cmdline.add_argument('sets', type=int, help='The number of sets into which to break the scheme')
  cmdline.add_argument('bzeros', type=int, help='Total number of b=0 images')

Lestropie

#!/usr/bin/env python

# Works using MRtrix version 3.0.0 or later

# For linking against MRtrix3 Python API:
# https://mrtrix.readthedocs.io/en/3.0.0/tips_and_tricks/external_modules.html

# Typical pre-processing required before running this script:
# 1. FOD: Standard DWI pre-processing
# 2. 5TT: e.g. 5ttgen fsl