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slurmd[w3]: *** JOB 8 CANCELLED AT 2018-10-03T07:37:46 *** | |
slurmd[w3]: Unable to unlink domain socket: No such file or directory | |
slurmd[w3]: unlink(/tmp/slurm/slurmd_spool/job00008/slurm_script): No such file or directory | |
slurmd[w3]: rmdir(/tmp/slurm/slurmd_spool/job00008): No such file or directory |
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The server could not complete the request. Please contact the Galaxy Team if this error persists. Error executing tool: 'Dataset collection has no element_identifier with key forward.' | |
{ | |
"tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.2.6.2", | |
"tool_version": "2.2.6.2", | |
"inputs": { | |
"library|type": "paired_collection", | |
"library|input_1": { | |
"values": [ | |
{ |
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<?xml version="1.0"?> | |
-<job_conf> | |
-<plugins workers="4"> | |
<plugin load="galaxy.jobs.runners.slurm:SlurmJobRunner" type="runner" id="slurm"/> | |
<plugin load="galaxy.jobs.runners.pulsar:PulsarRESTJobRunner" type="runner" id="pulsar_rest"/> |
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[server:main] | |
use = egg:Paste#http | |
use_threadpool = True | |
host = 127.0.0.1 | |
port = 8080 | |
[filter:proxy-prefix] | |
use = egg:PasteDeploy#prefix | |
[filter:gzip] |
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CloudMan from Galaxy | |
Admin | Report bugs | Wiki | Screencast | |
The entire log file (/mnt/galaxy/galaxy-app/main.log) is shown. Show latest | Back to admin view | |
galaxy.queue_worker INFO 2018-09-13 10:26:49,630 Initializing main Galaxy Queue Worker on sqlalchemy+postgres://galaxy@localhost:5930/galaxy | |
tool_shed.tool_shed_registry DEBUG 2018-09-13 10:26:49,652 Loading references to tool sheds from /mnt/galaxy/galaxy-app/config/tool_sheds_conf.xml | |
tool_shed.tool_shed_registry DEBUG 2018-09-13 10:26:49,652 Loaded reference to tool shed: Galaxy Main Tool Shed | |
tool_shed.tool_shed_registry DEBUG 2018-09-13 10:26:49,652 Loaded reference to tool shed: Galaxy Test Tool Shed |
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# | |
# Live version of this file will get overwritten by CloudMan. | |
# | |
# See the slurm.conf man page for more information. | |
# | |
ClusterName=GalaxyCloudMan | |
ControlMachine=ip-172-31-77-176 | |
SlurmUser=slurm | |
SlurmctldPort=6817 | |
SlurmdPort=6818 |
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<?xml version="1.0" ?><job_conf> | |
<plugins workers="4"> | |
<plugin id="slurm" load="galaxy.jobs.runners.slurm:SlurmJobRunner" type="runner"/> | |
<plugin id="pulsar_rest" load="galaxy.jobs.runners.pulsar:PulsarRESTJobRunner" type="runner"/> | |
<plugin id="local" load="galaxy.jobs.runners.local:LocalJobRunner" type="runner" workers="10"/> | |
</plugins> | |
<handlers default="handlers"><handler id="handler0" tags="handlers"><plugin id="slurm"/></handler><handler id="handler1" tags="handlers"><plugin id="slurm"/></handler><handler id="handler2" tags="handlers"><plugin id="slurm"/></handler></handlers> | |
<destinations default="slurm_cluster"> |
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<?xml version="1.0" ?><job_conf> | |
<plugins workers="4"> | |
<plugin id="slurm" load="galaxy.jobs.runners.slurm:SlurmJobRunner" type="runner"/> | |
<plugin id="pulsar_rest" load="galaxy.jobs.runners.pulsar:PulsarRESTJobRunner" type="runner"/> | |
<plugin id="local" load="galaxy.jobs.runners.local:LocalJobRunner" type="runner" workers="50"/> | |
</plugins> | |
<handlers default="handlers"><handler id="handler0" tags="handlers"><plugin id="slurm"/></handler><handler id="handler1" tags="handlers"><plugin id="slurm"/></handler><handler id="handler2" tags="handlers"><plugin id="slurm"/></handler></handlers> | |
<destinations default="slurm_cluster"> |
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</head> | |
<body scroll="no" class="full-content"> | |
<div id="everything" style="position: absolute; top: 0; left: 0; width: 100%; height: 100%;"> | |
<div id="background"></div> | |
<div id="masthead" class="navbar navbar-fixed-top navbar-inverse"></div> | |
<div id="messagebox" style="display: none;"></div> | |
<div id="inactivebox" class="panel-warning-message" style="display: none;"></div> |
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