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#!/usr/bin/env python3 | |
# coding: utf8 | |
# | |
# Counting Reference Model Final Assembly N's (BED, region, etc output files) | |
# | |
# Part of the WGS Extract (https://wgse.bio/) system (standalone) | |
# | |
# Copyright (C) 2022-2024 Randy Harr | |
# | |
# License: GNU General Public License v3 or later |
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#!/bin/bash | |
# | |
# Fixes FTDNA BAM version 1 files so can be processed by standard bioinformatic tools. | |
# Applies only to Bigy files (not needed for Bigy2 or Bigy3) | |
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# This is handled behind the scenes (automagically) by WGS Extract (in the next release) | |
# Simply a stand-alone. simple scenario script installation for demonstration purposes here | |
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# Relies on htslib bgzip and samtools; along with wget, python rm, zip and unzip. |