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hierarchical-classification
function graph(d3) {
//step 0, new graph() ,import "http://d3js.org/d3.v3.min.js" to get d3
//step 1, custom the config
this.config = {
bg_size: {
width: 800,
height: 600
},
edge_def_width: 5,
edge_show_arrow: true,
node_draggable: true,
show_performance_bar: false,
}
var self = this;
var cluster = d3.layout.cluster().size([self.config.bg_size.height, self.config.bg_size.width - 160]);
/// step 2, custom the actions
var showTitleAction;
var showSubheadAction;
var showPathDesc;
this.showTitle = function (f) {
showTitleAction = f;
}
this.showSubhead = function (f) {
showSubheadAction = f;
}
this.showPathDesc = function (f) {
showPathDesc = f;
}
/// final step , bind some data
this.bind = function (data) {
/**
忽略连通图中的回路,产生一棵树。
这棵树符合cluster.nodes(tree)的调用要求(参见:https://github.com/mbostock/d3/wiki/Cluster-Layout)
*/
var conv2tree = function (data) {
var root = self.getRoot(data);
var hasParentFlag = {}; //保证每个节点只有一个父节点,以便形成树状结构
hasParentFlag[root.id] = true; //根节点不允许作为子节点
self.traverseEdge(data, function (source, target) { //遍历每条边,即所有节点间关系
if (!hasParentFlag[target.id] && source.id != target.id) { //首次被遍历到的target,作为source的子节点,后续将不被其它节点作为子节点
if (!source.children) {
source.children = [];
}
source.children.push(target);
hasParentFlag[target.id] = true;
}
});
return root;
}
/**
通过cluster.nodes(tree),为tree的每个节点计算x,y,depth等属性以便定位
*/
var buildNodes = function (tree) {
return cluster.nodes(tree);
}
/**
建立节点之间各条边。
如果直接调用cluster.links(nodes),其只支持树状结构,回路会被丢弃,借此把所有边补充完整。
*/
var buildLinks = function (data) {
var result = [];
self.traverseEdge(data, function (source, target, ref) {
result.push({
'source': source,
'target': target,
'ref': ref
});
});
return result;
}
/**
更新数据时保留原有节点的位置信息
*/
var merge = function (nodes, links) {
var oldData = [];
if (self.nodes) { //原nodes存在,输出oldData
self.nodes.forEach(function (d) {
oldData[d.id] = d;
});
}
if (oldData) { //用oldData里的数据覆盖现nodes里的数据
nodes.forEach(function (d) {
if (oldData[d.id]) {
d.x = oldData[d.id].x;
d.y = oldData[d.id].y;
}
});
}
self.nodes = nodes;
self.links = links;
}
//1)连通图->树 参见:https://github.com/mbostock/d3/wiki/Cluster-Layout)
//1)temporarily convert a connectivity to a tree
var tree = conv2tree(data);
//2)根据树状结构计算节点位置.
//2)caculate for nodes' coords with <code>cluster.nodes(tree);</code>
var nodes = buildNodes(tree);
//3)因为连通图是网状而非树状,将所有边补充完整
//3)fill in all the edges(links) of the connectivity
var links = buildLinks(data);
//4)与原有的数据做一次merge,保留位置等信息
//4)do merge to keep info like node's position
merge(nodes, links);
//5)重绘
//5)redraw
self.redraw();
}
/// call redraw() if necessary (reconfig,recostom the actions, etc. )
this.redraw = function () {
var fontSize = 8
var lineSpace = 2
var boxHeight = 50
var boxWidth = 85
var width = self.config.bg_size.width;
var height = self.config.bg_size.height;
var yscale_performancebar = d3.scale.linear()
.domain([0, 1])
.rangeRound([boxHeight / 2, -boxHeight / 2])
var diagonal = d3.svg.diagonal()
.projection(function (d) {
return [d.y - boxWidth / 2, d.x];
});
var _clear = function () {
d3.select("svg").remove();
svg = d3.select("body").append("svg")
.attr("width", width)
.attr("height", height)
.append("g")
.attr("transform", "translate(80,0)");
svg.append("svg:defs").selectAll("marker")
.data(["suit"])
.enter().append("svg:marker")
.attr("id", "idArrow")
.attr("viewBox", "0 -5 10 10")
.attr("refX", 15)
.attr("refY", -1.5)
.attr("markerWidth", 6)
.attr("markerHeight", 6)
.attr("orient", "auto")
.append("svg:path")
.attr("d", "M0,-5L10,0L0,5");
}
var _redrawEdges = function () {
var linksWithArrow = self.links;
//to show arrow at the end of the path with fixed size, we have to copy each path with .stroke-width=1
if (self.config.edge_show_arrow) {
linksWithArrow = [];
self.links.forEach(function (d) {
var fake = {};
for (prop in d) {
fake[prop] = d[prop];
}
fake.faked = true; //copy each path with .faked=true as flag
linksWithArrow.push(fake);
linksWithArrow.push(d);
})
}
var path = svg.selectAll(".link").data(linksWithArrow);
// when new path arrives
path.enter().insert("path", ":first-child")
.attr("marker-end", function (d) {
if (d.faked) return "url(#idArrow)";
})
.attr("id", function (d) {
if (!d.faked) return "link" + d.ref.from + "-" + d.ref.to;
})
.attr("class", function (d) {
return "link" + " link-" + d.ref.from + " link-" + d.ref.to;
})
.attr("d", diagonal)
.transition()
.duration(1000)
.style("stroke-width", function (d) {
if (d.faked) {
return 1;
}
if (d.ref.edge_width) return Math.max(1, boxHeight / 2 * d.ref.edge_width); //won't become invisible if too thin
else return self.config.edge_def_width; //default value
})
// when path changes
path.attr("d", diagonal)
// when path's removed
path.exit().remove();
}
_clear();
_redrawEdges();
///show description on each path(edge)
if (showPathDesc) {
svg.selectAll(".abc").data(self.links).enter().append("text").append("textPath")
.attr("xlink:xlink:href", function (d) {
return "#link" + d.ref.from + "-" + d.ref.to;
}) //why not .attr("xlink:href",...)? this's a hack, see https://groups.google.com/forum/?fromgroups=#!topic/d3-js/vLgbiM4ki1g
.attr("startOffset", "50%")
.text(showPathDesc)
}
///show each node with text
var existingNodes = svg.selectAll(".node").data(self.nodes); //选中所有节点
//矩形
//draw rectangle
var newNodes = existingNodes.enter().append("g");
newNodes.attr("class", "node")
.attr("id", function (d) {
return "node-" + d.id
})
.attr("transform", function (d) {
return "translate(" + d.y + "," + d.x + ")";
})
//.append("rect") //make nodes as rectangles OR:
.append("circle").attr('r',50) //make nodes as circles
.attr('class', 'nodebox')
.attr("x", -boxWidth / 2)
.attr("y", -boxHeight / 2)
.attr("width", boxWidth)
.attr("height", boxHeight)
if (self.config.node_draggable) {
newNodes.call(d3.behavior.drag().origin(Object).on("drag", function (d) {
//拖动时移动节点
//translate the node
function translate(x, y) {
return {
'x': x,
'y': y
}
}
var coord = eval(d3.select(this).attr("transform"));
d3.select(this)
.attr("transform", "translate(" + (coord.x + d3.event.dx) + "," + (coord.y + d3.event.dy) + ")")
//拖动时重绘边
//update node's coord ,then redraw affected edges
d.x = d.x + d3.event.dy;
d.y = d.y + d3.event.dx;
_redrawEdges();
}));
}
//红色柱状性能指示图
//show performance bar
if (self.config.show_performance_bar) {
newNodes.append("rect")
.attr('class', 'performancebar')
.attr("x", boxWidth / 2 * 1.05)
.attr("width", boxWidth / 10)
.style("fill", "red")
.style("stroke", "red")
.attr("y", boxHeight / 2)
.attr("height", 0)
//计算柱状图高度
existingNodes.select('.performancebar')
.transition()
.duration(1000)
.attr("y", function (d) {
return yscale_performancebar(d.load)
})
.attr("height", function (d) {
return boxHeight / 2 - yscale_performancebar(d.load)
})
}
///构造文案容器
///text constructors
//标题
//node titles
newNodes.append("text")
.attr("class", "nodeTitle")
.attr("y", -boxHeight / 2 + fontSize + 2 * lineSpace)
.attr("text-anchor", "middle")
//副标题
//node subhead
newNodes.append("text")
.attr("text-anchor", "middle")
.attr("class", "nodeText f1Text")
.attr("y", -boxHeight / 2 + 2 * fontSize + 3 * lineSpace)
//详情矩阵
//node body text
newNodes.append("g")
.attr("class", "confusionmatrix")
.selectAll("g").data(function (d) {
return d.confusionmatrix ? d.confusionmatrix : []
})
.enter().append("g")
.attr("class", "rows")
.attr("transform", function (d, i) {
return "translate(" + (-15) + "," + (-boxHeight / 2 + (i + 3) * fontSize + (i + 4) * lineSpace) + ")";
})
.selectAll("g").data(function (d) {
return d
})
.enter().append("g")
.attr("class", "columns")
.attr("transform", function (d, i) {
return "translate(" + i * 30 + ",0)";
})
.append("text")
.attr("text-anchor", "middle")
.attr("class", "nodeText")
///显示文案
///show text
existingNodes.select(".nodeTitle").text(showTitleAction ? showTitleAction : function (d) {
return d.id + ")" + d.name
}); //标题
existingNodes.select(".f1Text").text(showSubheadAction ? showSubheadAction : function (d) {
return Math.round(d.load * 100) + "%"
}); //副标题
existingNodes.select(".confusionmatrix") //详情矩阵
.selectAll(".rows")
.data(function (d) {
return d.confusionmatrix ? d.confusionmatrix : []
})
.selectAll(".columns") //rows
.data(function (d) {
return d
})
.select("text")
.text(function (d) {
return d
})
}
/**
返回根节点
return the root node
*/
this.getRoot = function (data) {
return data['0'];
};
/**
遍历所有节点
traverse all nodes
callback(node)
*/
this.traverse = function (data, callback) {
if (!data) console.error('data is null')
function _init() {
var i;
for (i in data) {
data[i].visited = false;
}
}
function _traverse(pt, callback) {
if (!pt) {
return;
}
pt.visited = true;
console.debug("traverse node:" + pt.id);
callback(pt);
if (pt.ref) {
pt.ref.forEach(function (ref) {
var childNode = data[ref.to.toString()];
if (childNode && !childNode.visited) {
_traverse(childNode, callback);
}
})
}
}
_init();
_traverse(self.getRoot(data), callback);
};
/**
遍历所有边
traverse all edges
callback(sourceNode,targetNode,ref)
*/
this.traverseEdge = function (data, callback) {
if (!data) console.error('data is null')
self.traverse(data, function (node) {
if (node.ref) {
node.ref.forEach(function (ref) {
var childNode = data[ref.to.toString()];
if (childNode) {
console.debug("traverse edge:" + node.id + "-" + childNode.id);
callback(node, childNode, ref);
}
});
}
});
};
}
/////////function(class) Graph end////////////////
function init_page(){
// request data here
var data = {
"0": {
id: 0,
name: "root",
load: Math.random(),
confusionmatrix: [
[7293, 1224],
[7293, 1224]
],
ref: [{
from: 0,
to: 1,
edge_width: Math.random(),
}, {
from: 0,
to: 4,
edge_width: Math.random(),
}, {
from: 0,
to: 5,
edge_width: Math.random(),
}, {
from: 0,
to: 6,
edge_width: Math.random(),
}, {
from: 0,
to: 7,
edge_width: Math.random(),
}, ]
},
"1": {
id: 1,
name: "systemA",
load: Math.random(),
confusionmatrix: [
[7293, 1224],
[7293, 1224]
],
ref: [{
from: 1,
to: 2,
edge_width: Math.random(),
}, ]
},
"2": {
id: 2,
name: "systemB",
load: Math.random(),
confusionmatrix: [
[7293, 1224],
[7293, 1224]
],
ref: [{
from: 2,
to: 3,
edge_width: Math.random(),
}, ]
},
"3": {
id: 3,
name: "systemC",
load: Math.random(),
confusionmatrix: [
[7293, 1224],
[7293, 1224]
],
},
"4": {
id: 4,
name: "systemD",
load: Math.random(),
confusionmatrix: [
[7293, 1224],
[7293, 1224]
],
ref: [{
from: 4,
to: 2,
edge_width: Math.random(),
}, ]
},
"5": {
id: 5,
name: "systemE",
load: Math.random(),
confusionmatrix: [
[7293, 1224],
[7293, 1224]
],
},
"6": {
id: 6,
name: "systemF",
load: Math.random(),
confusionmatrix: [
[7293, 1224],
[7293, 1224]
],
ref: [{
from: 6,
to: 2,
edge_width: Math.random(),
}, ]
},
"7": {
id: 7,
name: "systemG",
load: Math.random(),
confusionmatrix: [
[7293, 1224],
[7293, 1224]
],
ref: [{
from: 7,
to: 3,
edge_width: Math.random(),
}, ]
},
};
//customize anything here
myGraph.showTitle(function (d) {
return d.name;
});
myGraph.showSubhead(function (d) {
return "p0";
});
myGraph.showPathDesc(function (d) {
return d.ref.edge_width.toFixed(2);
});
myGraph.bind(data);
}
function refresh() {
//request data here
var data = {
"0": {
id: 0,
name: "systemA",
load: Math.random(),
confusionmatrix: [
[7293, 1224],
[7293, 1224]
],
ref: [{
from: 0,
to: 1,
edge_width: Math.random(),
}, {
from: 0,
to: 4,
edge_width: Math.random(),
}, {
from: 0,
to: 5,
edge_width: Math.random(),
},
/*
{
from:0,
to:6,
edge_width:Math.random(),
},
*/
{
from: 0,
to: 7,
edge_width: Math.random(),
}, ]
},
"1": {
id: 1,
name: "systemB",
load: Math.random(),
confusionmatrix: [
[7293, 1224],
[7293, 1224]
],
ref: [{
from: 1,
to: 2,
edge_width: Math.random(),
}, ]
},
"2": {
id: 2,
name: "systemC",
load: Math.random(),
confusionmatrix: [
[7293, 1224],
[7293, 1224]
],
ref: [{
from: 2,
to: 3,
edge_width: Math.random(),
}, ]
},
"3": {
id: 3,
name: "systemD",
load: Math.random(),
confusionmatrix: [
[7293, 1224],
[7293, 1224]
],
},
"4": {
id: 4,
name: "systemE",
load: Math.random(),
confusionmatrix: [
[7293, 1224],
[7293, 1224]
],
ref: [{
from: 4,
to: 2,
edge_width: Math.random(),
}, {
from: 4,
to: 8,
edge_width: Math.random(),
}, ]
},
"5": {
id: 5,
name: "systemF",
load: Math.random(),
confusionmatrix: [
[7293, 1224],
[7293, 1224]
],
},
"8": { // change 6 to 8
id: 8,
name: "systemI",
load: Math.random(),
confusionmatrix: [
[7293, 1224],
[7293, 1224]
],
ref: [{
from: 8,
to: 7,
edge_width: Math.random(),
}, ]
},
"7": {
id: 7,
name: "systemH",
load: Math.random(),
confusionmatrix: [
[7293, 1224],
[7293, 1224]
],
ref: [{
from: 7,
to: 3,
edge_width: Math.random(),
}, ]
},
};
myGraph.bind(data);
}
var myGraph = new graph(d3); //http://d3js.org/
init_page();
<html>
<head>
<title>hierarchical classification</title>
<link crossorigin="anonymous" href="nodes.css" media="all" rel="stylesheet" />
</head>
<body>
<script src="https://cdnjs.cloudflare.com/ajax/libs/d3/3.5.6/d3.min.js" charset="utf-8"></script>
<script src="hierarchical-classification.js"></script>
</body>
</html>
.nodebox {
fill: #fff;
stroke: steelblue;
stroke-width: 3.5px;
}
#node_PHYSICAL .nodebox {
stroke: beige;
}
#node_PHYSICAL_HARD .nodebox {
stroke: tan;
}
#node_PHYSICAL_SOFT .nodebox {
stroke: yellow;
}
#node_BIOTA .nodebox {
stroke: darkgreen;
}
#node_BIOTA_SPONGES .nodebox {
stroke: orange;
}
#node_BIOTA_ALGAE .nodebox {
stroke: green;
}
#node_BIOTA_ALGAE_CANOPY_ECK .nodebox {
stroke: lightgreen;
}
#node_BIOTA_ALGAE_CRUSTOSE .nodebox {
stroke: purple;
}
.nodeTitle {
font: 8px sans-serif;
font-weight: bold;
}
.nodeText {
font: 8px sans-serif;
}
.f1Text {
fill: orange;
font-weight: bold;
}
.link {
fill: none;
stroke: #ccc;
stroke-width: 3.5px;
}
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