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(partial) EasyBuild log for failed build of /tmp/eb-8rzo4qt5/files_pr13471/p/PEAR/PEAR-0.9.11-GCC-10.3.0.eb (PR(s) #13471)
== 2021-07-22 08:49:27,662 easyblock.py:287 INFO This is EasyBuild 4.4.1 (framework: 4.4.1, easyblocks: 4.4.1) on host ribnode012.
== 2021-07-22 08:49:27,662 easyblock.py:293 INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/mnt/software/easybuild/20.04/software/EasyBuild/4.4.1/lib/python3.8/site-packages/easybuild/easyblocks/generic/configuremake.py)
== 2021-07-22 08:49:27,662 easyblock.py:933 INFO Build dir set to /dev/shm/PEAR/0.9.11/GCC-10.3.0
== 2021-07-22 08:49:27,662 config.py:617 DEBUG software install path as specified by 'installpath' and 'subdir_software': /dev/shm/easybuild/software
== 2021-07-22 08:49:27,662 easyconfig.py:2586 DEBUG Determining software installation subdir for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fb39f822ac0>
== 2021-07-22 08:49:27,662 easyconfig.py:2589 DEBUG Using fixed naming software installation subdir: PEAR/0.9.11-GCC-10.3.0
== 2021-07-22 08:49:27,663 easyblock.py:993 INFO Software install dir set to /dev/shm/easybuild/software/PEAR/0.9.11-GCC-10.3.0
== 2021-07-22 08:49:27,663 config.py:617 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /dev/shm/easybuild/modules
== 2021-07-22 08:49:27,663 easyblock.py:998 INFO Module install dir set to /dev/shm/easybuild/modules/all
== 2021-07-22 08:49:27,663 easyblock.py:272 INFO Init completed for application name PEAR version 0.9.11
== 2021-07-22 08:49:27,663 easyblock.py:3658 INFO Obtained application instance of for PEAR (easyblock: ConfigureMake)
== 2021-07-22 08:49:27,663 easyblock.py:3671 DEBUG Skip set to False
== 2021-07-22 08:49:27,663 easyconfig.py:1654 INFO Generating template values...
== 2021-07-22 08:49:27,663 templates.py:189 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fb39f822ac0>
== 2021-07-22 08:49:27,664 templates.py:216 DEBUG version found in easyconfig is 0.9.11
== 2021-07-22 08:49:27,664 templates.py:318 DEBUG name: bitbucket_account, config: %(namelower)s
== 2021-07-22 08:49:27,664 templates.py:318 DEBUG name: github_account, config: %(namelower)s
== 2021-07-22 08:49:27,664 templates.py:318 DEBUG name: name, config: PEAR
== 2021-07-22 08:49:27,664 templates.py:318 DEBUG name: parallel, config: None
== 2021-07-22 08:49:27,664 templates.py:318 DEBUG name: version, config: 0.9.11
== 2021-07-22 08:49:27,664 templates.py:318 DEBUG name: versionsuffix, config:
== 2021-07-22 08:49:27,664 templates.py:318 DEBUG name: versionprefix, config:
== 2021-07-22 08:49:27,665 easyconfig.py:1673 INFO Template values: arch='x86_64', bitbucket_account='pear', github_account='pear', module_name='PEAR/0.9.11-GCC-10.3.0', name='PEAR', nameletter='P', nameletterlower='p', namelower='pear', toolchain_name='GCC', toolchain_version='10.3.0', version='0.9.11', version_major='0', version_major_minor='0.9', version_minor='9', versionprefix='', versionsuffix=''
== 2021-07-22 08:49:27,665 one.py:145 DEBUG Not copying '__builtins__' variable from parsed easyconfig
== 2021-07-22 08:49:27,666 one.py:524 DEBUG Extracted comments:
{'above': {'sources': ['# Needs manual download via web-form,',
'# https://www.h-its.org/en/research/sco/software/#NextGenerationSequencingSequenceAnalysis']},
'header': [],
'inline': {},
'iterabove': {},
'iterinline': {},
'tail': []}
== 2021-07-22 08:49:27,666 one.py:175 INFO Skipping reformatting value for parameter 'toolchain'
== 2021-07-22 08:49:27,666 easyconfig.py:1220 DEBUG Dumped easyconfig: easyblock = 'ConfigureMake'
name = 'PEAR'
version = '0.9.11'
homepage = 'https://cme.h-its.org/exelixis/web/software/%(namelower)s/'
description = """PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger.
It is fully parallelized and can run with as low as just a few kilobytes of memory."""
toolchain = {'name': 'GCC', 'version': '10.3.0'}
# Needs manual download via web-form,
# https://www.h-its.org/en/research/sco/software/#NextGenerationSequencingSequenceAnalysis
sources = ['%(namelower)s-src-%(version)s.tar.gz']
checksums = ['94f4a1835cd75ec6fab83405c2545ddba6b6bb1644579222e9cc2ad57a59d654']
builddependencies = [
('Autotools', '20210128', '', ('GCCcore', '10.3.0')),
]
dependencies = [
('zlib', '1.2.11', '', ('GCCcore', '10.3.0')),
('bzip2', '1.0.8', '', ('GCCcore', '10.3.0')),
]
preconfigopts = "aclocal && autoconf && automake --add-missing && "
sanity_check_paths = {
'files': ['bin/%(namelower)s'],
'dirs': [],
}
moduleclass = 'bio'
== 2021-07-22 08:49:27,667 filetools.py:1775 INFO Creating directory /tmp/eb-8rzo4qt5/reprod_20210722084927_2747151 (parents: True, set_gid: False, sticky: False)
== 2021-07-22 08:49:27,667 easyblock.py:3889 INFO Dumped easyconfig instance to /tmp/eb-8rzo4qt5/reprod_20210722084927_2747151/PEAR-0.9.11-GCC-10.3.0.eb
== 2021-07-22 08:49:27,667 filetools.py:1775 INFO Creating directory /tmp/eb-8rzo4qt5/reprod_20210722084927_2747151/easyblocks (parents: True, set_gid: False, sticky: False)
== 2021-07-22 08:49:27,669 filetools.py:2286 INFO /mnt/software/easybuild/20.04/software/EasyBuild/4.4.1/lib/python3.8/site-packages/easybuild/easyblocks/generic/configuremake.py copied to /tmp/eb-8rzo4qt5/reprod_20210722084927_2747151/easyblocks/configuremake.py
== 2021-07-22 08:49:27,669 easyblock.py:3869 INFO Dumped easyblock configuremake.py required for reproduction to /tmp/eb-8rzo4qt5/reprod_20210722084927_2747151/easyblocks
== 2021-07-22 08:49:27,669 easyblock.py:1777 INFO Number of iterations to perform for central part of installation procedure: 1
== 2021-07-22 08:49:27,669 build_log.py:265 INFO building and installing PEAR/0.9.11-GCC-10.3.0...
== 2021-07-22 08:49:27,669 config.py:617 DEBUG software install path as specified by 'installpath' and 'subdir_software': /dev/shm/easybuild/software
== 2021-07-22 08:49:27,670 filetools.py:1868 INFO Lock /dev/shm/easybuild/software/.locks/_dev_shm_easybuild_software_PEAR_0.9.11-GCC-10.3.0.lock does not exist
== 2021-07-22 08:49:27,670 config.py:617 DEBUG software install path as specified by 'installpath' and 'subdir_software': /dev/shm/easybuild/software
== 2021-07-22 08:49:27,670 filetools.py:1809 INFO Creating lock at /dev/shm/easybuild/software/.locks/_dev_shm_easybuild_software_PEAR_0.9.11-GCC-10.3.0.lock...
== 2021-07-22 08:49:27,670 filetools.py:1775 INFO Creating directory /dev/shm/easybuild/software/.locks/_dev_shm_easybuild_software_PEAR_0.9.11-GCC-10.3.0.lock (parents: True, set_gid: False, sticky: False)
== 2021-07-22 08:49:27,670 filetools.py:1818 INFO Lock created: /dev/shm/easybuild/software/.locks/_dev_shm_easybuild_software_PEAR_0.9.11-GCC-10.3.0.lock
== 2021-07-22 08:49:27,670 easyblock.py:3398 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False)
== 2021-07-22 08:49:27,670 build_log.py:265 INFO fetching files...
== 2021-07-22 08:49:27,671 easyblock.py:3407 INFO Starting fetch step
== 2021-07-22 08:49:27,671 easyconfig.py:1654 INFO Generating template values...
== 2021-07-22 08:49:27,671 templates.py:189 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fb39f822ac0>
== 2021-07-22 08:49:27,671 templates.py:216 DEBUG version found in easyconfig is 0.9.11
== 2021-07-22 08:49:27,671 templates.py:318 DEBUG name: bitbucket_account, config: %(namelower)s
== 2021-07-22 08:49:27,671 templates.py:318 DEBUG name: github_account, config: %(namelower)s
== 2021-07-22 08:49:27,671 templates.py:318 DEBUG name: name, config: PEAR
== 2021-07-22 08:49:27,671 templates.py:318 DEBUG name: parallel, config: None
== 2021-07-22 08:49:27,672 templates.py:318 DEBUG name: version, config: 0.9.11
== 2021-07-22 08:49:27,672 templates.py:318 DEBUG name: versionsuffix, config:
== 2021-07-22 08:49:27,672 templates.py:318 DEBUG name: versionprefix, config:
== 2021-07-22 08:49:27,672 easyconfig.py:1673 INFO Template values: arch='x86_64', bitbucket_account='pear', builddir='/dev/shm/PEAR/0.9.11/GCC-10.3.0', github_account='pear', installdir='/dev/shm/easybuild/software/PEAR/0.9.11-GCC-10.3.0', module_name='PEAR/0.9.11-GCC-10.3.0', name='PEAR', nameletter='P', nameletterlower='p', namelower='pear', toolchain_name='GCC', toolchain_version='10.3.0', version='0.9.11', version_major='0', version_major_minor='0.9', version_minor='9', versionprefix='', versionsuffix=''
== 2021-07-22 08:49:27,672 easyblock.py:3415 INFO Running method fetch_step part of step fetch
== 2021-07-22 08:49:27,672 easyblock.py:1898 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
== 2021-07-22 08:49:27,673 tools.py:270 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /mnt/software/easybuild/20.04/software/EasyBuild/4.4.1/bin/eb
== 2021-07-22 08:49:27,673 tools.py:284 INFO Also considering installation prefix /mnt/software/easybuild/20.04/software/EasyBuild/4.4.1 (determined via path to 'eb' script)...
== 2021-07-22 08:49:27,673 tools.py:299 DEBUG Checking for easybuild/easyconfigs at /mnt/software/easybuild/20.04/software/EasyBuild/4.4.1/easybuild/easyconfigs/easybuild/easyconfigs
== 2021-07-22 08:49:27,673 tools.py:299 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-8rzo4qt5/files_pr13471/easybuild/easyconfigs
== 2021-07-22 08:49:27,673 tools.py:299 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-8rzo4qt5/fake_vsc_vs7lthc8/easybuild/easyconfigs
== 2021-07-22 08:49:27,674 tools.py:299 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3/dist-packages/git/ext/gitdb/easybuild/easyconfigs
== 2021-07-22 08:49:27,674 tools.py:299 DEBUG Checking for easybuild/easyconfigs at /mnt/software/easybuild/easybuild/easyconfigs
== 2021-07-22 08:49:27,674 tools.py:299 DEBUG Checking for easybuild/easyconfigs at /mnt/software/easybuild/20.04/software/EasyBuild/4.4.1/lib/python3.8/site-packages/easybuild/easyconfigs
== 2021-07-22 08:49:27,674 tools.py:299 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python38.zip/easybuild/easyconfigs
== 2021-07-22 08:49:27,674 tools.py:299 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.8/easybuild/easyconfigs
== 2021-07-22 08:49:27,674 tools.py:299 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.8/lib-dynload/easybuild/easyconfigs
== 2021-07-22 08:49:27,674 tools.py:299 DEBUG Checking for easybuild/easyconfigs at /home/itadmin/.local/lib/python3.8/site-packages/easybuild/easyconfigs
== 2021-07-22 08:49:27,674 tools.py:299 DEBUG Checking for easybuild/easyconfigs at /usr/local/lib/python3.8/dist-packages/easybuild/easyconfigs
== 2021-07-22 08:49:27,674 tools.py:299 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3/dist-packages/easybuild/easyconfigs
== 2021-07-22 08:49:27,675 tools.py:299 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3/dist-packages/gitdb/ext/smmap/easybuild/easyconfigs
== 2021-07-22 08:49:27,675 tools.py:299 DEBUG Checking for easybuild/easyconfigs at /mnt/software/easybuild/20.04/software/EasyBuild/4.4.1/easybuild/easyconfigs
== 2021-07-22 08:49:27,675 tools.py:303 DEBUG Added /mnt/software/easybuild/20.04/software/EasyBuild/4.4.1/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
== 2021-07-22 08:49:27,676 filetools.py:1775 INFO Creating directory /dev/shm/easybuild/sources/p/PEAR (parents: True, set_gid: False, sticky: False)
== 2021-07-22 08:49:27,676 easyblock.py:832 DEBUG Trying to download file pear-src-0.9.11.tar.gz from https://sources.easybuild.io/p/PEAR/pear-src-0.9.11.tar.gz to /dev/shm/easybuild/sources/p/PEAR/pear-src-0.9.11.tar.gz ...
== 2021-07-22 08:49:27,676 filetools.py:706 DEBUG Trying to download pear-src-0.9.11.tar.gz from https://sources.easybuild.io/p/PEAR/pear-src-0.9.11.tar.gz to /dev/shm/easybuild/sources/p/PEAR/pear-src-0.9.11.tar.gz
== 2021-07-22 08:49:27,676 filetools.py:713 DEBUG Using timeout of 10 seconds for initiating download
== 2021-07-22 08:49:27,677 filetools.py:1794 DEBUG Not creating existing path /dev/shm/easybuild/sources/p/PEAR
== 2021-07-22 08:49:39,826 filetools.py:780 WARNING URL https://sources.easybuild.io/p/PEAR/pear-src-0.9.11.tar.gz was not found (HTTP response code 404), not trying again
== 2021-07-22 08:49:39,826 filetools.py:806 WARNING Download of https://sources.easybuild.io/p/PEAR/pear-src-0.9.11.tar.gz to /dev/shm/easybuild/sources/p/PEAR/pear-src-0.9.11.tar.gz failed, done trying
== 2021-07-22 08:49:39,852 build_log.py:169 ERROR EasyBuild crashed with an error (at easybuild/20.04/software/EasyBuild/4.4.1/lib/python3.8/site-packages/easybuild/base/exceptions.py:124 in __init__): Couldn't find file pear-src-0.9.11.tar.gz anywhere, and downloading it didn't work either... Paths attempted (in order): /tmp/eb-8rzo4qt5/files_pr13471/p/PEAR/p/PEAR/pear-src-0.9.11.tar.gz, /tmp/eb-8rzo4qt5/files_pr13471/p/PEAR/PEAR/pear-src-0.9.11.tar.gz, /tmp/eb-8rzo4qt5/files_pr13471/p/PEAR/pear-src-0.9.11.tar.gz, /mnt/software/easybuild/20.04/software/EasyBuild/4.4.1/easybuild/easyconfigs/p/PEAR/pear-src-0.9.11.tar.gz, /mnt/software/easybuild/20.04/software/EasyBuild/4.4.1/easybuild/easyconfigs/PEAR/pear-src-0.9.11.tar.gz, /mnt/software/easybuild/20.04/software/EasyBuild/4.4.1/easybuild/easyconfigs/pear-src-0.9.11.tar.gz, /tmp/eb-8rzo4qt5/files_pr13471/p/PEAR/pear-src-0.9.11.tar.gz, /tmp/eb-8rzo4qt5/files_pr13471/PEAR/pear-src-0.9.11.tar.gz, /tmp/eb-8rzo4qt5/files_pr13471/pear-src-0.9.11.tar.gz, /mnt/software/easybuild/20.04/software/EasyBuild/4.4.1/easybuild/easyconfigs/p/PEAR/pear-src-0.9.11.tar.gz, /mnt/software/easybuild/20.04/software/EasyBuild/4.4.1/easybuild/easyconfigs/PEAR/pear-src-0.9.11.tar.gz, /mnt/software/easybuild/20.04/software/EasyBuild/4.4.1/easybuild/easyconfigs/pear-src-0.9.11.tar.gz, /dev/shm/easybuild/sources/p/PEAR/pear-src-0.9.11.tar.gz, /dev/shm/easybuild/sources/PEAR/pear-src-0.9.11.tar.gz, /dev/shm/easybuild/sources/pear-src-0.9.11.tar.gz, https://sources.easybuild.io/p/PEAR/pear-src-0.9.11.tar.gz (at easybuild/20.04/software/EasyBuild/4.4.1/lib/python3.8/site-packages/easybuild/framework/easyblock.py:854 in obtain_file)
== 2021-07-22 08:49:39,854 build_log.py:265 INFO ... (took 12 secs)
== 2021-07-22 08:49:39,854 config.py:617 DEBUG software install path as specified by 'installpath' and 'subdir_software': /dev/shm/easybuild/software
== 2021-07-22 08:49:39,854 filetools.py:1876 INFO Removing lock /dev/shm/easybuild/software/.locks/_dev_shm_easybuild_software_PEAR_0.9.11-GCC-10.3.0.lock...
== 2021-07-22 08:49:39,854 filetools.py:358 INFO Path /dev/shm/easybuild/software/.locks/_dev_shm_easybuild_software_PEAR_0.9.11-GCC-10.3.0.lock successfully removed.
== 2021-07-22 08:49:39,855 filetools.py:1880 INFO Lock removed: /dev/shm/easybuild/software/.locks/_dev_shm_easybuild_software_PEAR_0.9.11-GCC-10.3.0.lock
== 2021-07-22 08:49:39,855 easyblock.py:3701 WARNING build failed (first 300 chars): Couldn't find file pear-src-0.9.11.tar.gz anywhere, and downloading it didn't work either... Paths attempted (in order): /tmp/eb-8rzo4qt5/files_pr13471/p/PEAR/p/PEAR/pear-src-0.9.11.tar.gz, /tmp/eb-8rzo4qt5/files_pr13471/p/PEAR/PEAR/pear-src-0.9.11.tar.gz, /tmp/eb-8rzo4qt5/files_pr13471/p/PEAR/pear-
== 2021-07-22 08:49:39,855 easyblock.py:302 INFO Closing log for application name PEAR version 0.9.11
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