| counts.csv |
| ===> Where do you most often perform bioinformatics analysis <=== | |
| 1 Personal computer (laptop/desktop) | |
| 2 Lab server | |
| 3 Departmental server | |
| 4 University server/cluster | |
| 5 Cloud | |
| 6 Other | |
| ===> Type of problems <=== |
If your system is running slowly, perhaps a process is using too much CPU time and won't let other processes run smoothly. To find out which processes are taking up a lot of CPU time, you can use Apple's Activity Monitor.
The CPU pane shows how processes are affecting CPU (processor) activity:
SAM and BAM filtering one-liners
@author: David Fredman, david.fredmanAAAAAA@gmail.com (sans poly-A tail)
@dependencies: http://sourceforge.net/projects/bamtools/ and http://samtools.sourceforge.net/
Please extend with additional/faster/better solutions via a pull request!
BWA mapping (using piping for minimal disk I/O)
| // ============================================================================ | |
| // gzstream, C++ iostream classes wrapping the zlib compression library. | |
| // Copyright (C) 2001 Deepak Bandyopadhyay, Lutz Kettner | |
| // | |
| // This library is free software; you can redistribute it and/or | |
| // modify it under the terms of the GNU Lesser General Public | |
| // License as published by the Free Software Foundation; either | |
| // version 2.1 of the License, or (at your option) any later version. | |
| // | |
| // This library is distributed in the hope that it will be useful, |
