SophieDePaula

#Script #1 appendix A
#this script unites 3 tables from UCSC, in order to add the type of alternative #splicing and the location of exon start and exon end to each gene

#***********************- pseudo code -*************************
# 1. foreach row in table REFALT
#   1.1. extract location data of alt splicing variant 
#   1.2. find according to this location the matching row in table ALTEV
#       1.2.1. if exists
#           1.2.1.1 print to TOUT the variant + the alt splicing type column from table ALTEV
# 2. foreach row in table TOUT

SophieDePaula

using System;
using System.Collections.Generic;
using System.Linq;
using System.Text;
using System.Threading.Tasks;

namespace Robot
{
    class Program
    {

SophieDePaula

curl "https://api.GitHub.com/repos/<GitHubUserName>/<REPO_NAME>/statuses/$GIT_COMMIT?access_token=<YOUR_GITHUB_TOKEN>" \
  -H "Content-Type: application/json" \
  -X POST \
  -d "{\"state\": \"success\",\"context\": \"continuous-integration/jenkins\", \"description\": \"Jenkins\", \"target_url\": \"<YOUR_JENKINS_URL>/job/<JenkinsProjectName>/$BUILD_NUMBER/console\"}"

SophieDePaula

curl "https://api.GitHub.com/repos/<GitHubUserName>/<REPO_NAME>/statuses/$GIT_COMMIT?access_token=<YOUR_GITHUB_TOKEN>" \
  -H "Content-Type: application/json" \
  -X POST \
  -d "{\"state\": \"failure\",\"context\": \"continuous-integration/jenkins\", \"description\": \"Jenkins\", \"target_url\": \"<YOUR_JENKINS_URL>/job/<JenkinsProjectName>/$BUILD_NUMBER/console\"}"

SophieDePaula

2022-04-27 19:46:08:585 - [Appium] Welcome to Appium v1.20.2
2022-04-27 19:46:08:587 - [Appium] Non-default server args:
2022-04-27 19:46:08:587 - [Appium]   address: 127.0.0.1
2022-04-27 19:46:08:587 - [Appium]   port: 4443
2022-04-27 19:46:08:587 - [Appium]   callbackAddress: 127.0.0.1
2022-04-27 19:46:08:588 - [Appium]   logTimestamp: true
2022-04-27 19:46:08:588 - [Appium]   logNoColors: true
2022-04-27 19:46:08:588 - [Appium]   chromedriverExecutable: /mnt/android/chromedriver/10.0/chromedriver
2022-04-27 19:46:08:588 - [Appium]   defaultCapabilities: {
2022-04-27 19:46:08:588 - [Appium]     orientation: LANDSCAPE

SophieDePaula

[Appium] Welcome to Appium v2.0.0-beta.33
[Appium] Attempting to load driver uiautomator2...
[debug] [Appium] Requiring driver at /Users/sophietagar/.appium/node_modules/appium-uiautomator2-driver
[Appium] Appium REST http interface listener started on 0.0.0.0:4723
[Appium] Available drivers:
[Appium]   - uiautomator2@2.1.0 (automationName 'UiAutomator2')
[Appium] No plugins have been installed. Use the "appium plugin" command to install the one(s) you want to use.
[HTTP] --> POST /session
[HTTP] {"desiredCapabilities":{"browserName":"","platformName":"Android","appium:platformVersion":"11.0","appium:deviceName":"Pixel 4 API 30","appium:app":"https://applitools.jfrog.io/artifactory/Examples/eyes-android-hello-world.apk","appium:automationName":"uiautomator2","appium:orientation":"LANDSCAPE"},"capabilities":{"alwaysMatch":{"browserName":"","platformName":"Android","appium:platformVersion":"11.0","appium:deviceName":"Pixel 4 API 30","appium:app":"https://applitools.jfrog.io/artifactory/Examples/eyes-android-hel