ZacCranko

\NeedsTeXFormat{LaTeX2e}
\ProvidesClass{notes}

\RequirePackage{xparse, etoolbox}

\DeclareOption{maketitle}{\AtBeginDocument{\maketitle}}
\DeclareOption*{\PassOptionsToClass{\CurrentOption}{article}}
\ProcessOptions\relax

\author{Zac Cranko} % default author

ZacCranko

push!(LOAD_PATH, pwd())

# Run _init.jl at runtime if it exists
if VERSION < v"0.4-"
	if isinteractive() && isfile("_init.jl")
		info("Found ", joinpath(pwd(),"_init.jl"))
		include(joinpath(pwd(),"_init.jl"))
	end
else
	atreplinit() do repl

ZacCranko

diff --git a/Makefile b/Makefile
index c995628..8c4cd92 100644
--- a/Makefile
+++ b/Makefile
@@ -240,9 +240,10 @@ endif
 ifeq ($(USE_SYSTEM_ARPACK),0)
 JL_PRIVATE_LIBS += arpack
 endif
-ifeq ($(USE_SYSTEM_SUITESPARSE),0)
+# Always install these, since Homebrew's suite-sparse is all static libraries

ZacCranko

diff --git a/deps/Makefile b/deps/Makefile
index 16d503b..4a8a807 100644
--- a/deps/Makefile
+++ b/deps/Makefile
@@ -654,7 +654,7 @@ distclean-suitesparse: clean-suitesparse
 # SUITESPARSE WRAPPER
 ifeq ($(USE_SYSTEM_SUITESPARSE), 1)
-SUITESPARSE_INC = -I /usr/include/suitesparse
+SUITESPARSE_INC = -I $(brew --prefix)/include
 SUITESPARSE_LIB = -lumfpack -lcholmod -lamd -lcamd -lcolamd -lspqr

ZacCranko

function DiGraph{T<:Real}(adjmx::AbstractMatrix{T})
    isequal(size(adjmx)...) || error("Adjacency / distance matrices must be square")

    g = DiGraph(size(adjmx,1))

    for (s,d) in zip(findn(adjmx)...)
        add_edge!(g,s,d)
    end
    return g
end

ZacCranko

julia> Pkg.status()
9 required packages:
 - Cairo                         0.2.27
 - Debug                         0.1.3
 - Devectorize                   0.4.1
 - Distributions                 0.7.3
 - Gadfly                        0.3.12
 - IJulia                        0.2.5
 - LightGraphs                   0.1.14
 - Reel                          0.1.0

ZacCranko

using ForwardDiff

norm2(x::Vector) = dot(x,x) # define square norm function

function linesearch(z, 
                    p, 
                    grad, 
                    B, 
                    Δ, 
                    c1::Real=1e-4,