(partial) EasyBuild log for failed build of /tmp/eb-NhI7V1/files_pr6553/k/KMC/KMC-3.1.0-foss-2018a.eb (PR #6553)

KMC-3.1.0-foss-2018a_partial.log

== 2018-08-21 21:17:25,460 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2018-08-21 21:17:25,460 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS_MT to -fftw3 -pthread
== 2018-08-21 21:17:25,460 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined)
== 2018-08-21 21:17:25,460 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined)
== 2018-08-21 21:17:25,460 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFT_INC_DIR to /home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/include
== 2018-08-21 21:17:25,461 environment.py:97 INFO Environment variable FFT_INC_DIR set to /home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/include (previously undefined)
== 2018-08-21 21:17:25,461 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/include (previously undefined)
== 2018-08-21 21:17:25,461 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFT_LIB_DIR to /home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/lib
== 2018-08-21 21:17:25,461 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/lib (previously undefined)
== 2018-08-21 21:17:25,461 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/lib (previously undefined)
== 2018-08-21 21:17:25,462 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS to libfftw3.a
== 2018-08-21 21:17:25,462 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2018-08-21 21:17:25,462 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2018-08-21 21:17:25,462 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS_MT to libfftw3.a,libpthread.a
== 2018-08-21 21:17:25,462 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined)
== 2018-08-21 21:17:25,463 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined)
== 2018-08-21 21:17:25,463 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FLIBS to -lgfortran
== 2018-08-21 21:17:25,463 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined)
== 2018-08-21 21:17:25,463 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined)
== 2018-08-21 21:17:25,464 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LAPACK_INC_DIR to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/include
== 2018-08-21 21:17:25,464 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/include (previously undefined)
== 2018-08-21 21:17:25,464 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/include (previously undefined)
== 2018-08-21 21:17:25,464 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LAPACK_LIB_DIR to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib
== 2018-08-21 21:17:25,464 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib (previously undefined)
== 2018-08-21 21:17:25,465 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib (previously undefined)
== 2018-08-21 21:17:25,465 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LAPACK_MT_STATIC_LIBS to libopenblas.a,libgfortran.a
== 2018-08-21 21:17:25,465 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2018-08-21 21:17:25,465 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2018-08-21 21:17:25,465 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LAPACK_STATIC_LIBS to libopenblas.a,libgfortran.a
== 2018-08-21 21:17:25,466 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2018-08-21 21:17:25,466 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2018-08-21 21:17:25,466 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LDFLAGS to -L/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib64 -L/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib -L/home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib -L/home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/lib -L/home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/lib -L/home/centos/.local/easybuild/software/bzip2/1.0.6-GCCcore-6.4.0/lib -L/home/centos/.local/easybuild/software/zlib/1.2.11-GCCcore-6.4.0/lib
== 2018-08-21 21:17:25,466 environment.py:97 INFO Environment variable LDFLAGS set to -L/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib64 -L/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib -L/home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib -L/home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/lib -L/home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/lib -L/home/centos/.local/easybuild/software/bzip2/1.0.6-GCCcore-6.4.0/lib -L/home/centos/.local/easybuild/software/zlib/1.2.11-GCCcore-6.4.0/lib (previously undefined)
== 2018-08-21 21:17:25,466 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib64 -L/home/centos/.local/easybuild/software/GCCcore/6.4.0/lib -L/home/centos/.local/easybuild/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib -L/home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/lib -L/home/centos/.local/easybuild/software/FFTW/3.3.7-gompi-2018a/lib -L/home/centos/.local/easybuild/software/bzip2/1.0.6-GCCcore-6.4.0/lib -L/home/centos/.local/easybuild/software/zlib/1.2.11-GCCcore-6.4.0/lib (previously undefined)
== 2018-08-21 21:17:25,467 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBBLAS to -lopenblas -lgfortran
== 2018-08-21 21:17:25,467 environment.py:97 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previously undefined)
== 2018-08-21 21:17:25,467 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previously undefined)
== 2018-08-21 21:17:25,467 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBBLAS_MT to -lopenblas -lgfortran
== 2018-08-21 21:17:25,467 environment.py:97 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran (previously undefined)
== 2018-08-21 21:17:25,468 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran (previously undefined)
== 2018-08-21 21:17:25,468 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBFFT to -lfftw3
== 2018-08-21 21:17:25,468 environment.py:97 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined)
== 2018-08-21 21:17:25,468 environment.py:97 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined)
== 2018-08-21 21:17:25,468 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBFFT_MT to -lfftw3 -lpthread
== 2018-08-21 21:17:25,469 environment.py:97 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined)
== 2018-08-21 21:17:25,469 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined)
== 2018-08-21 21:17:25,469 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBLAPACK to -lopenblas -lgfortran
== 2018-08-21 21:17:25,469 environment.py:97 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previously undefined)
== 2018-08-21 21:17:25,469 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previously undefined)
== 2018-08-21 21:17:25,470 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT to -lopenblas -lgfortran
== 2018-08-21 21:17:25,470 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined)
== 2018-08-21 21:17:25,470 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined)
== 2018-08-21 21:17:25,470 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT_ONLY to -lopenblas -lgfortran
== 2018-08-21 21:17:25,470 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2018-08-21 21:17:25,471 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2018-08-21 21:17:25,471 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBLAPACK_ONLY to -lopenblas -lgfortran
== 2018-08-21 21:17:25,471 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2018-08-21 21:17:25,471 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2018-08-21 21:17:25,471 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBS to -lm -lpthread
== 2018-08-21 21:17:25,472 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined)
== 2018-08-21 21:17:25,472 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined)
== 2018-08-21 21:17:25,472 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK to -lscalapack -lopenblas -lgfortran
== 2018-08-21 21:17:25,472 environment.py:97 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined)
== 2018-08-21 21:17:25,473 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined)
== 2018-08-21 21:17:25,473 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT to -lscalapack -lopenblas -lpthread -lgfortran
== 2018-08-21 21:17:25,473 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined)
== 2018-08-21 21:17:25,473 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined)
== 2018-08-21 21:17:25,473 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT_ONLY to -lscalapack -lgfortran
== 2018-08-21 21:17:25,473 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2018-08-21 21:17:25,474 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2018-08-21 21:17:25,474 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_ONLY to -lscalapack -lgfortran
== 2018-08-21 21:17:25,474 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2018-08-21 21:17:25,474 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2018-08-21 21:17:25,475 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPICC to mpicc
== 2018-08-21 21:17:25,475 environment.py:97 INFO Environment variable MPICC set to mpicc (previously undefined)
== 2018-08-21 21:17:25,475 environment.py:97 INFO Environment variable EBVARMPICC set to mpicc (previously undefined)
== 2018-08-21 21:17:25,475 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPICXX to mpicxx
== 2018-08-21 21:17:25,475 environment.py:97 INFO Environment variable MPICXX set to mpicxx (previously undefined)
== 2018-08-21 21:17:25,476 environment.py:97 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined)
== 2018-08-21 21:17:25,476 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPIF77 to mpifort
== 2018-08-21 21:17:25,476 environment.py:97 INFO Environment variable MPIF77 set to mpifort (previously undefined)
== 2018-08-21 21:17:25,476 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined)
== 2018-08-21 21:17:25,476 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPIF90 to mpifort
== 2018-08-21 21:17:25,477 environment.py:97 INFO Environment variable MPIF90 set to mpifort (previously undefined)
== 2018-08-21 21:17:25,477 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined)
== 2018-08-21 21:17:25,477 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPIFC to mpifort
== 2018-08-21 21:17:25,477 environment.py:97 INFO Environment variable MPIFC set to mpifort (previously undefined)
== 2018-08-21 21:17:25,477 environment.py:97 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined)
== 2018-08-21 21:17:25,478 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPI_INC_DIR to /home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/include
== 2018-08-21 21:17:25,478 environment.py:97 INFO Environment variable MPI_INC_DIR set to /home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/include (previously undefined)
== 2018-08-21 21:17:25,478 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/include (previously undefined)
== 2018-08-21 21:17:25,478 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPI_LIB_DIR to /home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/lib
== 2018-08-21 21:17:25,478 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/lib (previously undefined)
== 2018-08-21 21:17:25,479 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/lib (previously undefined)
== 2018-08-21 21:17:25,479 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPI_LIB_SHARED to /home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/lib/libmpi.so
== 2018-08-21 21:17:25,479 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/lib/libmpi.so (previously undefined)
== 2018-08-21 21:17:25,479 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /home/centos/.local/easybuild/software/OpenMPI/2.1.2-GCC-6.4.0-2.28/lib/libmpi.so (previously undefined)
== 2018-08-21 21:17:25,479 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPI_LIB_STATIC to 
== 2018-08-21 21:17:25,480 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to  (previously undefined)
== 2018-08-21 21:17:25,480 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to  (previously undefined)
== 2018-08-21 21:17:25,480 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_CC to gcc
== 2018-08-21 21:17:25,480 environment.py:97 INFO Environment variable OMPI_CC set to gcc (previously undefined)
== 2018-08-21 21:17:25,480 environment.py:97 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined)
== 2018-08-21 21:17:25,481 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_CXX to g++
== 2018-08-21 21:17:25,481 environment.py:97 INFO Environment variable OMPI_CXX set to g++ (previously undefined)
== 2018-08-21 21:17:25,481 environment.py:97 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined)
== 2018-08-21 21:17:25,481 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_F77 to gfortran
== 2018-08-21 21:17:25,482 environment.py:97 INFO Environment variable OMPI_F77 set to gfortran (previously undefined)
== 2018-08-21 21:17:25,482 environment.py:97 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined)
== 2018-08-21 21:17:25,482 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_F90 to gfortran
== 2018-08-21 21:17:25,482 environment.py:97 INFO Environment variable OMPI_F90 set to gfortran (previously undefined)
== 2018-08-21 21:17:25,482 environment.py:97 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined)
== 2018-08-21 21:17:25,483 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_FC to gfortran
== 2018-08-21 21:17:25,483 environment.py:97 INFO Environment variable OMPI_FC set to gfortran (previously undefined)
== 2018-08-21 21:17:25,483 environment.py:97 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined)
== 2018-08-21 21:17:25,483 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OPTFLAGS to -O2 -ftree-vectorize -march=native
== 2018-08-21 21:17:25,483 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined)
== 2018-08-21 21:17:25,484 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined)
== 2018-08-21 21:17:25,484 toolchain.py:901 DEBUG _setenv_variables: setting environment variable PRECFLAGS to -fno-math-errno
== 2018-08-21 21:17:25,484 environment.py:97 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined)
== 2018-08-21 21:17:25,484 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined)
== 2018-08-21 21:17:25,484 toolchain.py:901 DEBUG _setenv_variables: setting environment variable SCALAPACK_INC_DIR to /home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/include
== 2018-08-21 21:17:25,485 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/include (previously undefined)
== 2018-08-21 21:17:25,485 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/include (previously undefined)
== 2018-08-21 21:17:25,485 toolchain.py:901 DEBUG _setenv_variables: setting environment variable SCALAPACK_LIB_DIR to /home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/lib
== 2018-08-21 21:17:25,485 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/lib (previously undefined)
== 2018-08-21 21:17:25,485 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /home/centos/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20/lib (previously undefined)
== 2018-08-21 21:17:25,486 toolchain.py:901 DEBUG _setenv_variables: setting environment variable SCALAPACK_MT_STATIC_LIBS to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a
== 2018-08-21 21:17:25,486 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2018-08-21 21:17:25,486 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2018-08-21 21:17:25,486 toolchain.py:901 DEBUG _setenv_variables: setting environment variable SCALAPACK_STATIC_LIBS to libscalapack.a,libopenblas.a,libgfortran.a
== 2018-08-21 21:17:25,486 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined)
== 2018-08-21 21:17:25,487 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined)
== 2018-08-21 21:17:25,487 toolchain.py:289 DEBUG get_software_version software version 2.1.2 for OpenMPI was found in environment
== 2018-08-21 21:17:25,487 easyblock.py:1442 INFO Using /home/centos/.local/easybuild/build/KMC/3.1.0/foss-2018a/KMC-3.1.0/ as start dir
== 2018-08-21 21:17:25,488 easyblock.py:1445 DEBUG Changed to real build directory /home/centos/.local/easybuild/build/KMC/3.1.0/foss-2018a/KMC-3.1.0/ (start_dir)
== 2018-08-21 21:17:25,488 easyblock.py:2520 DEBUG Not skipping configure step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False
== 2018-08-21 21:17:25,488 build_log.py:233 INFO configuring...
== 2018-08-21 21:17:25,488 easyblock.py:2528 INFO Starting configure step
== 2018-08-21 21:17:25,489 templates.py:154 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f7f6e207c10>
== 2018-08-21 21:17:25,489 templates.py:178 DEBUG version found in easyconfig is 3.1.0
== 2018-08-21 21:17:25,489 templates.py:222 DEBUG name: bitbucket_account, config: %(namelower)s
== 2018-08-21 21:17:25,489 templates.py:222 DEBUG name: github_account, config: None
== 2018-08-21 21:17:25,490 templates.py:222 DEBUG name: name, config: KMC
== 2018-08-21 21:17:25,490 templates.py:222 DEBUG name: version, config: 3.1.0
== 2018-08-21 21:17:25,490 templates.py:222 DEBUG name: versionsuffix, config: 
== 2018-08-21 21:17:25,490 templates.py:222 DEBUG name: versionprefix, config: 
== 2018-08-21 21:17:25,491 templates.py:154 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f7f6e207c10>
== 2018-08-21 21:17:25,491 templates.py:178 DEBUG version found in easyconfig is 3.1.0
== 2018-08-21 21:17:25,491 templates.py:222 DEBUG name: bitbucket_account, config: %(namelower)s
== 2018-08-21 21:17:25,491 templates.py:222 DEBUG name: github_account, config: None
== 2018-08-21 21:17:25,491 templates.py:222 DEBUG name: name, config: KMC
== 2018-08-21 21:17:25,492 templates.py:222 DEBUG name: version, config: 3.1.0
== 2018-08-21 21:17:25,492 templates.py:222 DEBUG name: versionsuffix, config: 
== 2018-08-21 21:17:25,492 templates.py:222 DEBUG name: versionprefix, config: 
== 2018-08-21 21:17:25,492 easyblock.py:2534 INFO Running method configure_step part of step configure
== 2018-08-21 21:17:25,493 easyblock.py:2520 DEBUG Not skipping build step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False
== 2018-08-21 21:17:25,493 build_log.py:233 INFO building...
== 2018-08-21 21:17:25,493 easyblock.py:2528 INFO Starting build step
== 2018-08-21 21:17:25,493 templates.py:154 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f7f6e207c10>
== 2018-08-21 21:17:25,494 templates.py:178 DEBUG version found in easyconfig is 3.1.0
== 2018-08-21 21:17:25,494 templates.py:222 DEBUG name: bitbucket_account, config: %(namelower)s
== 2018-08-21 21:17:25,494 templates.py:222 DEBUG name: github_account, config: None
== 2018-08-21 21:17:25,494 templates.py:222 DEBUG name: name, config: KMC
== 2018-08-21 21:17:25,494 templates.py:222 DEBUG name: version, config: 3.1.0
== 2018-08-21 21:17:25,495 templates.py:222 DEBUG name: versionsuffix, config: 
== 2018-08-21 21:17:25,495 templates.py:222 DEBUG name: versionprefix, config: 
== 2018-08-21 21:17:25,495 templates.py:154 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f7f6e207c10>
== 2018-08-21 21:17:25,495 templates.py:178 DEBUG version found in easyconfig is 3.1.0
== 2018-08-21 21:17:25,495 templates.py:222 DEBUG name: bitbucket_account, config: %(namelower)s
== 2018-08-21 21:17:25,496 templates.py:222 DEBUG name: github_account, config: None
== 2018-08-21 21:17:25,496 templates.py:222 DEBUG name: name, config: KMC
== 2018-08-21 21:17:25,496 templates.py:222 DEBUG name: version, config: 3.1.0
== 2018-08-21 21:17:25,496 templates.py:222 DEBUG name: versionsuffix, config: 
== 2018-08-21 21:17:25,497 templates.py:222 DEBUG name: versionprefix, config: 
== 2018-08-21 21:17:25,497 easyblock.py:2534 INFO Running method build_step part of step build
== 2018-08-21 21:17:25,497 run.py:173 DEBUG run_cmd: running cmd sed -i 's@[^ ]*/libz.a@${EBROOTZLIB}/lib/libz.a@g' makefile && sed -i 's@[^ ]*/libbz2.a@${EBROOTBZIP2}/lib/libbz2.a@g' makefile &&  make -j 8  (in /home/centos/.local/easybuild/build/KMC/3.1.0/foss-2018a/KMC-3.1.0)
== 2018-08-21 21:17:25,497 run.py:192 INFO running cmd: sed -i 's@[^ ]*/libz.a@${EBROOTZLIB}/lib/libz.a@g' makefile && sed -i 's@[^ ]*/libbz2.a@${EBROOTBZIP2}/lib/libbz2.a@g' makefile &&  make -j 8  
== 2018-08-21 21:19:00,605 build_log.py:158 ERROR EasyBuild crashed with an error (at easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages/vsc_base-2.8.3-py2.7.egg/vsc/utils/exceptions.py:124 in __init__): cmd "sed -i 's@[^ ]*/libz.a@${EBROOTZLIB}/lib/libz.a@g' makefile && sed -i 's@[^ ]*/libbz2.a@${EBROOTBZIP2}/lib/libbz2.a@g' makefile &&  make -j 8 " exited with exit code 2 and output:
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -c kmer_counter/kmer_counter.cpp -o kmer_counter/kmer_counter.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -c kmer_counter/mmer.cpp -o kmer_counter/mmer.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -c kmer_counter/mem_disk_file.cpp -o kmer_counter/mem_disk_file.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -c kmer_counter/rev_byte.cpp -o kmer_counter/rev_byte.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -c kmer_counter/bkb_writer.cpp -o kmer_counter/bkb_writer.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -c kmer_counter/cpu_info.cpp -o kmer_counter/cpu_info.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -c kmer_counter/bkb_reader.cpp -o kmer_counter/bkb_reader.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -c kmer_counter/fastq_reader.cpp -o kmer_counter/fastq_reader.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -c kmer_counter/timer.cpp -o kmer_counter/timer.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -c kmer_counter/develop.cpp -o kmer_counter/develop.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -c kmer_counter/kb_completer.cpp -o kmer_counter/kb_completer.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -c kmer_counter/kb_storer.cpp -o kmer_counter/kb_storer.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -c kmer_counter/kmer.cpp -o kmer_counter/kmer.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -c kmer_counter/prob_qual.cpp -o kmer_counter/prob_qual.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -msse2 -c kmer_counter/raduls_sse2.cpp -o kmer_counter/raduls_sse2.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -msse4.1 -c kmer_counter/raduls_sse41.cpp -o kmer_counter/raduls_sse41.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -mavx2 -mfma -fabi-version=0 -c kmer_counter/raduls_avx2.cpp -o kmer_counter/raduls_avx2.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -mavx -fabi-version=0 -c kmer_counter/raduls_avx.cpp -o kmer_counter/raduls_avx.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -c kmer_counter/libs/vectorclass/instrset_detect.cpp -o kmer_counter/instrset_detect.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -c kmc_dump/nc_utils.cpp -o kmc_dump/nc_utils.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -c kmc_dump/kmc_dump.cpp -o kmc_dump/kmc_dump.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -c kmc_api/mmer.cpp -o kmc_api/mmer.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -c kmc_api/kmc_file.cpp -o kmc_api/kmc_file.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -c kmc_api/kmer_api.cpp -o kmc_api/kmer_api.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++14 -c kmc_tools/kmc_header.cpp -o kmc_tools/kmc_header.o
kmc_api/kmc_file.cpp: In member function ‘bool CKMCFile::BinarySearch(int64, int64, const CKmerAPI&, uint64&, uint32)’:
kmc_api/kmc_file.cpp:1360:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  if (index_start >= total_kmers)
      ~~~~~~~~~~~~^~~~~~~~~~~~~~
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++14 -c kmc_tools/kmc_tools.cpp -o kmc_tools/kmc_tools.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++14 -c kmc_tools/nc_utils.cpp -o kmc_tools/nc_utils.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++14 -c kmc_tools/parameters_parser.cpp -o kmc_tools/parameters_parser.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++14 -c kmc_tools/parser.cpp -o kmc_tools/parser.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++14 -c kmc_tools/tokenizer.cpp -o kmc_tools/tokenizer.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++14 -c kmc_tools/fastq_filter.cpp -o kmc_tools/fastq_filter.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++14 -c kmc_tools/fastq_reader.cpp -o kmc_tools/fastq_reader.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++14 -c kmc_tools/fastq_writer.cpp -o kmc_tools/fastq_writer.o
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++14 -c kmc_tools/percent_progress.cpp -o kmc_tools/percent_progress.o
mkdir -p bin
g++ -lm -static -O3 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -o bin/kmc_dump kmc_dump/nc_utils.o kmc_dump/kmc_dump.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o
/home/centos/.local/easybuild/software/binutils/2.28-GCCcore-6.4.0/bin/ld.gold: error: cannot find -lc
/home/centos/.local/easybuild/software/binutils/2.28-GCCcore-6.4.0/bin/ld.gold: error: cannot find -lpthread
/home/centos/.local/easybuild/software/binutils/2.28-GCCcore-6.4.0/bin/ld.gold: error: cannot find -lm
/lib/../lib64/crt1.o(.text+0x12): error: undefined reference to '__libc_csu_fini'
/lib/../lib64/crt1.o(.text+0x19): error: undefined reference to '__libc_csu_init'
/lib/../lib64/crt1.o(.text+0x25): error: undefined reference to '__libc_start_main'
kmc_dump/nc_utils.o:nc_utils.cpp:function _GLOBAL__sub_I__ZN19CNumericConversions6digitsE: error: undefined reference to '__cxa_atexit'
kmc_dump/kmc_dump.o:kmc_dump.cpp:function std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::basic_string(char const*, std::allocator<char> const&) [clone .isra.22]: error: undefined reference to 'strlen'
kmc_dump/kmc_dump.o:kmc_dump.cpp:function std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::basic_string(char const*, std::allocator<char> const&) [clone .isra.22]: error: undefined reference to 'memcpy'
kmc_dump/kmc_dump.o:kmc_dump.cpp:function main: error: undefined reference to 'strtol'
kmc_dump/kmc_dump.o:kmc_dump.cpp:function main: error: undefined reference to 'strtol'
kmc_dump/kmc_dump.o:kmc_dump.cpp:function main: error: undefined reference to 'fopen'
kmc_dump/kmc_dump.o:kmc_dump.cpp:function main: error: undefined reference to 'setvbuf'
kmc_dump/kmc_dump.o:kmc_dump.cpp:function main: error: undefined reference to 'fwrite'
kmc_dump/kmc_dump.o:kmc_dump.cpp:function main: error: undefined reference to 'modf'
kmc_dump/kmc_dump.o:kmc_dump.cpp:function main: error: undefined reference to 'fwrite'
kmc_dump/kmc_dump.o:kmc_dump.cpp:function main: error: undefined reference to 'memset'
kmc_dump/kmc_dump.o:kmc_dump.cpp:function main: error: undefined reference to 'fclose'
kmc_dump/kmc_dump.o:kmc_dump.cpp:function _GLOBAL__sub_I_main: error: undefined reference to '__cxa_atexit'
kmc_api/mmer.o:mmer.cpp:function _GLOBAL__sub_I__ZN5CMmer5norm5E: error: undefined reference to '__cxa_atexit'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::BinarySearch(long long, long long, CKmerAPI const&, unsigned long long&, unsigned int) [clone .part.19]: error: undefined reference to 'memcpy'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::~CKMCFile(): error: undefined reference to 'fclose'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::~CKMCFile(): error: undefined reference to 'fclose'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::OpenASingleFile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, _IO_FILE*&, unsigned long long&, char*): error: undefined reference to 'fopen'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::OpenASingleFile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, _IO_FILE*&, unsigned long long&, char*): error: undefined reference to 'fseek'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::OpenASingleFile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, _IO_FILE*&, unsigned long long&, char*): error: undefined reference to 'ftell'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::OpenASingleFile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, _IO_FILE*&, unsigned long long&, char*): error: undefined reference to 'fseek'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::OpenASingleFile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, _IO_FILE*&, unsigned long long&, char*): error: undefined reference to 'fread'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::OpenASingleFile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, _IO_FILE*&, unsigned long long&, char*): error: undefined reference to 'strncmp'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::OpenASingleFile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, _IO_FILE*&, unsigned long long&, char*): error: undefined reference to 'rewind'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::OpenASingleFile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, _IO_FILE*&, unsigned long long&, char*): error: undefined reference to 'fread'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::OpenASingleFile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, _IO_FILE*&, unsigned long long&, char*): error: undefined reference to 'strncmp'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::OpenASingleFile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, _IO_FILE*&, unsigned long long&, char*): error: undefined reference to 'fclose'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::ReadParamsFrom_prefix_file_buf(unsigned long long&): error: undefined reference to 'ftell'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::ReadParamsFrom_prefix_file_buf(unsigned long long&): error: undefined reference to 'fseek'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::ReadParamsFrom_prefix_file_buf(unsigned long long&): error: undefined reference to 'fread'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::ReadParamsFrom_prefix_file_buf(unsigned long long&): error: undefined reference to 'fseek'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::ReadParamsFrom_prefix_file_buf(unsigned long long&): error: undefined reference to 'fread'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::ReadParamsFrom_prefix_file_buf(unsigned long long&): error: undefined reference to 'fgetc'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::ReadParamsFrom_prefix_file_buf(unsigned long long&): error: undefined reference to 'fgetc'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::ReadParamsFrom_prefix_file_buf(unsigned long long&): error: undefined reference to 'rewind'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::OpenForRA(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&): error: undefined reference to 'memcpy'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::OpenForRA(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&): error: undefined reference to 'memcpy'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::ReadNextKmer(CKmerAPI&, float&): error: undefined reference to 'memset'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::ReadNextKmer(CKmerAPI&, unsigned int&): error: undefined reference to 'memset'
kmc_api/kmc_file.o:kmc_file.cpp:function CKMCFile::ReadNextKmer(CKmerAPI&, unsigned long long&): error: undefined reference to 'memset'
kmc_api/kmc_file.o:kmc_file.cpp:function std::vector<float, std::allocator<float> >::_M_default_append(unsigned long): error: undefined reference to 'memmove'
kmc_api/kmc_file.o:kmc_file.cpp:function std::vector<unsigned int, std::allocator<unsigned int> >::_M_default_append(unsigned long): error: undefined reference to 'memmove'
kmc_api/kmc_file.o:kmc_file.cpp:function _GLOBAL__sub_I__ZN8CKMCFile9part_sizeE: error: undefined reference to '__cxa_atexit'
../../../../libstdc++-v3/libsupc++/del_op.cc:49: error: undefined reference to 'free'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/libstdc++-v3/../libgcc/unwind-pe.h:257: error: undefined reference to 'abort'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/libstdc++-v3/../libgcc/unwind-pe.h:88: error: undefined reference to 'abort'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/libstdc++-v3/../libgcc/unwind-pe.h:120: error: undefined reference to 'abort'
../../../../libstdc++-v3/libsupc++/eh_terminate.cc:51: error: undefined reference to 'abort'
../../../../libstdc++-v3/libsupc++/new_op.cc:50: error: undefined reference to 'malloc'
../../../../../libstdc++-v3/src/c++98/ios_init.cc:85: error: undefined reference to 'stdout'
../../../../../libstdc++-v3/src/c++98/ios_init.cc:86: error: undefined reference to 'stdin'
../../../../../libstdc++-v3/src/c++98/ios_init.cc:87: error: undefined reference to 'stderr'
../../../../../libstdc++-v3/src/c++98/ios_init.cc:102: error: undefined reference to 'stdout'
../../../../../libstdc++-v3/src/c++98/ios_init.cc:103: error: undefined reference to 'stdin'
../../../../../libstdc++-v3/src/c++98/ios_init.cc:104: error: undefined reference to 'stderr'
../../../../../libstdc++-v3/src/c++98/ios_init.cc:181: error: undefined reference to 'stdout'
../../../../../libstdc++-v3/src/c++98/ios_init.cc:182: error: undefined reference to 'stdin'
../../../../../libstdc++-v3/src/c++98/ios_init.cc:183: error: undefined reference to 'stderr'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/locale_classes.h:592: error: undefined reference to 'strcmp'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:267: error: undefined reference to 'strlen'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:267: error: undefined reference to 'strlen'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:267: error: undefined reference to 'strlen'
../../../../../libstdc++-v3/src/c++98/locale.cc:102: error: undefined reference to 'strcmp'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:262: error: undefined reference to 'memcmp'
../../../../../libstdc++-v3/src/c++98/locale_init.cc:284: error: undefined reference to 'setlocale'
monetary_members_cow.cc:242: error: undefined reference to '__nl_langinfo_l'
monetary_members_cow.cc:244: error: undefined reference to '__nl_langinfo_l'
monetary_members_cow.cc:258: error: undefined reference to '__nl_langinfo_l'
monetary_members_cow.cc:259: error: undefined reference to '__nl_langinfo_l'
monetary_members_cow.cc:582: error: undefined reference to '__uselocale'
monetary_members_cow.cc:661: error: undefined reference to 'wcslen'
monetary_members_cow.cc:676: error: undefined reference to 'wcslen'
monetary_members_cow.cc:689: error: undefined reference to 'wcslen'
monetary_members_cow.cc:718: error: undefined reference to '__uselocale'
monetary_members_cow.cc:655: error: undefined reference to 'mbsrtowcs'
monetary_members_cow.cc:684: error: undefined reference to 'mbsrtowcs'
monetary_members_cow.cc:670: error: undefined reference to 'mbsrtowcs'
monetary_members_cow.cc:699: error: undefined reference to '__uselocale'
monetary_members_cow.cc:765: error: undefined reference to '__uselocale'
monetary_members_cow.cc:844: error: undefined reference to 'wcslen'
monetary_members_cow.cc:838: error: undefined reference to 'mbsrtowcs'
monetary_members_cow.cc:917: error: undefined reference to 'wcscmp'
monetary_members_cow.cc:932: error: undefined reference to 'wcscmp'
monetary_members.cc:917: error: undefined reference to 'wcscmp'
monetary_members.cc:932: error: undefined reference to 'wcscmp'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/x86_64-pc-linux-gnu/bits/c++locale_internal.h:82: error: undefined reference to 'free'
c++locale.cc:50: error: undefined reference to '__strtof_l'
c++locale.cc:77: error: undefined reference to '__strtod_l'
c++locale.cc:107: error: undefined reference to 'strtold_l'
c++locale.cc:135: error: undefined reference to '__newlocale'
c++locale.cc:148: error: undefined reference to '__freelocale'
c++locale.cc:153: error: undefined reference to '__duplocale'
c++locale.cc:158: error: undefined reference to '__duplocale'
c++locale.cc:163: error: undefined reference to '__newlocale'
c++locale.cc:169: error: undefined reference to '__freelocale'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/x86_64-pc-linux-gnu/bits/c++locale_internal.h:82: error: undefined reference to 'free'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/stl_algobase.h:368: error: undefined reference to 'memmove'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/stl_algobase.h:570: error: undefined reference to 'memmove'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/x86_64-pc-linux-gnu/bits/c++locale_internal.h:78: error: undefined reference to 'strdup'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/x86_64-pc-linux-gnu/bits/c++locale_internal.h:82: error: undefined reference to 'free'
../../../../../libstdc++-v3/src/c++11/codecvt.cc:188: error: undefined reference to 'memcmp'
../../../../../libstdc++-v3/src/c++11/codecvt.cc:188: error: undefined reference to 'memcmp'
../../../../../libstdc++-v3/src/c++11/ctype.cc:74: error: undefined reference to 'memcmp'
../../../../../libstdc++-v3/src/c++11/functexcept.cc:74: error: undefined reference to 'gettext'
../../../../../libstdc++-v3/src/c++11/functexcept.cc:78: error: undefined reference to 'gettext'
../../../../../libstdc++-v3/src/c++11/functexcept.cc:82: error: undefined reference to 'gettext'
../../../../../libstdc++-v3/src/c++11/functexcept.cc:86: error: undefined reference to 'gettext'
../../../../../libstdc++-v3/src/c++11/system_error.cc:66: error: undefined reference to 'strerror'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/locale_classes.h:592: error: undefined reference to 'strcmp'
ctype_members.cc:77: error: undefined reference to '__wctype_l'
ctype_members.cc:71: error: undefined reference to '__wctype_l'
ctype_members.cc:95: error: undefined reference to '__wctype_l'
ctype_members.cc:65: error: undefined reference to '__wctype_l'
ctype_members.cc:108: error: undefined reference to '__towupper_l'
ctype_members.cc:115: error: undefined reference to '__towupper_l'
ctype_members.cc:123: error: undefined reference to '__towlower_l'
ctype_members.cc:130: error: undefined reference to '__towlower_l'
ctype_members.cc:155: error: undefined reference to '__iswctype_l'
ctype_members.cc:147: error: undefined reference to '__iswctype_l'
ctype_members.cc:177: error: undefined reference to '__iswctype_l'
/usr/include/wchar.h:396: error: undefined reference to 'wctob'
/usr/include/wchar.h:396: error: undefined reference to 'wctob'
/usr/include/wchar.h:396: error: undefined reference to 'wctob'
/usr/include/wchar.h:396: error: undefined reference to 'wctob'
/usr/include/wchar.h:390: error: undefined reference to 'btowc'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:274: error: undefined reference to 'memchr'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:274: error: undefined reference to 'memchr'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:274: error: undefined reference to 'memchr'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:274: error: undefined reference to 'memchr'
../../../../../libstdc++-v3/src/c++11/cow-string-inst.cc:99: error: undefined reference to 'fopen'
../../../../../libstdc++-v3/src/c++11/cow-string-inst.cc:112: error: undefined reference to 'strtoul'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:381: error: undefined reference to 'wmemcpy'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:373: error: undefined reference to 'wmemmove'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:389: error: undefined reference to 'wmemset'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:381: error: undefined reference to 'wmemcpy'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:381: error: undefined reference to 'wmemcpy'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:381: error: undefined reference to 'wmemcpy'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:353: error: undefined reference to 'wmemcmp'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:365: error: undefined reference to 'wmemchr'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:353: error: undefined reference to 'wmemcmp'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:365: error: undefined reference to 'wmemchr'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:365: error: undefined reference to 'wmemchr'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:365: error: undefined reference to 'wmemchr'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:353: error: undefined reference to 'wmemcmp'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:353: error: undefined reference to 'wmemcmp'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:389: error: undefined reference to 'wmemset'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:373: error: undefined reference to 'wmemmove'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:389: error: undefined reference to 'wmemset'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:373: error: undefined reference to 'wmemmove'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:389: error: undefined reference to 'wmemset'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/x86_64-pc-linux-gnu/bits/c++locale.h:92: error: undefined reference to 'vsnprintf'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/x86_64-pc-linux-gnu/bits/messages_members.h:54: error: undefined reference to 'strcmp'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/x86_64-pc-linux-gnu/bits/messages_members.h:73: error: undefined reference to 'bindtextdomain'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/x86_64-pc-linux-gnu/bits/messages_members.h:73: error: undefined reference to 'bindtextdomain'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:225: error: undefined reference to 'getc'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:225: error: undefined reference to 'getc'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:230: error: undefined reference to 'ungetc'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:230: error: undefined reference to 'ungetc'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:230: error: undefined reference to 'ungetc'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:191: error: undefined reference to 'fflush'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:191: error: undefined reference to 'fflush'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:176: error: undefined reference to 'fflush'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:235: error: undefined reference to 'putc'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:206: error: undefined reference to 'fseeko64'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:207: error: undefined reference to 'ftello64'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:206: error: undefined reference to 'fseeko64'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:207: error: undefined reference to 'ftello64'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:258: error: undefined reference to 'getwc'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:258: error: undefined reference to 'getwc'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:258: error: undefined reference to 'getwc'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:263: error: undefined reference to 'ungetwc'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:263: error: undefined reference to 'ungetwc'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:263: error: undefined reference to 'ungetwc'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:176: error: undefined reference to 'fflush'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:268: error: undefined reference to 'putwc'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:268: error: undefined reference to 'putwc'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:252: error: undefined reference to 'fwrite'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:206: error: undefined reference to 'fseeko64'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:207: error: undefined reference to 'ftello64'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:206: error: undefined reference to 'fseeko64'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/ext/stdio_sync_filebuf.h:207: error: undefined reference to 'ftello64'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/x86_64-pc-linux-gnu/bits/messages_members.h:73: error: undefined reference to 'bindtextdomain'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/x86_64-pc-linux-gnu/bits/messages_members.h:73: error: undefined reference to 'bindtextdomain'
/home/centos/.local/easybuild/build/GCCcore/6.4.0/dummy-/gcc-6.4.0/stage3_obj/x86_64-pc-linux-gnu/libstdc++-v3/include/bits/char_traits.h:373: error: undefined reference to 'wmemmove'
../../../../libstdc++-v3/libsupc++/eh_alloc.cc:272: error: undefined reference to 'malloc'
../../../../libstdc++-v3/libsupc++/eh_alloc.cc:303: error: undefined reference to 'malloc'
../../../../libstdc++-v3/libsupc++/eh_alloc.cc:123: error: undefined reference to 'malloc'
../../../../libstdc++-v3/libsupc++/guard.cc:301: error: undefined reference to 'syscall'
../../../../libstdc++-v3/libsupc++/guard.cc:360: error: undefined reference to 'syscall'
../../../../libstdc++-v3/libsupc++/guard.cc:400: error: undefined reference to 'syscall'
../../../../libstdc++-v3/libsupc++/pure.cc:49: error: undefined reference to 'write'
../../../../libstdc++-v3/libsupc++/pure.cc:56: error: undefined reference to 'write'
../../../../libstdc++-v3/libsupc++/vterminate.cc:67: error: undefined reference to 'stderr'
../../../../libstdc++-v3/libsupc++/vterminate.cc:67: error: undefined reference to 'fwrite'
../../../../libstdc++-v3/libsupc++/vterminate.cc:71: error: undefined reference to 'fputs'
../../../../libstdc++-v3/libsupc++/vterminate.cc:69: error: undefined reference to 'fputs'
../../../../libstdc++-v3/libsupc++/vterminate.cc:86: error: undefined reference to 'fputs'
../../../../libstdc++-v3/libsupc++/vterminate.cc:87: error: undefined reference to 'fputc'
cp-demangle.c:3863: error: undefined reference to 'realloc'
cp-demangle.c:4135: error: undefined reference to 'sprintf'
cp-demangle.c:4135: error: undefined reference to 'sprintf'
cp-demangle.c:4135: error: undefined reference to 'sprintf'
cp-demangle.c:4135: error: undefined reference to 'sprintf'
collate_members_cow.cc:45: error: undefined reference to '__strcoll_l'
collate_members_cow.cc:53: error: undefined reference to '__strxfrm_l'
collate_members_cow.cc:61: error: undefined reference to '__wcscoll_l'
collate_members_cow.cc:69: error: undefined reference to '__wcsxfrm_l'
messages_members_cow.cc:80: error: undefined reference to 'bind_textdomain_codeset'
messages_members_cow.cc:49: error: undefined reference to 'dgettext'
messages_members_cow.cc:117: error: undefined reference to 'bind_textdomain_codeset'
messages_members_cow.cc:49: error: undefined reference to 'dgettext'
codecvt_members.cc:71: error: undefined reference to 'wcsnrtombs'
codecvt_members.cc:97: error: undefined reference to 'wcrtomb'
codecvt_members.cc:78: error: undefined reference to 'wcrtomb'
codecvt_members.cc:148: error: undefined reference to 'mbsnrtowcs'
codecvt_members.cc:157: error: undefined reference to 'mbrtowc'
codecvt_members.cc:209: error: undefined reference to '__ctype_get_mb_cur_max'
codecvt_members.cc:225: error: undefined reference to '__ctype_get_mb_cur_max'
codecvt_members.cc:264: error: undefined reference to 'mbsnrtowcs'
codecvt_members.cc:273: error: undefined reference to 'mbrtowc'
collate_members.cc:45: error: undefined reference to '__strcoll_l'
collate_members.cc:53: error: undefined reference to '__strxfrm_l'
collate_members.cc:61: error: undefined reference to '__wcscoll_l'
collate_members.cc:69: error: undefined reference to '__wcsxfrm_l'
messages_members.cc:80: error: undefined reference to 'bind_textdomain_codeset'
messages_members.cc:49: error: undefined reference to 'dgettext'
messages_members.cc:117: error: undefined reference to 'bind_textdomain_codeset'
messages_members.cc:49: error: undefined reference to 'dgettext'
time_members.cc:47: error: undefined reference to '__strftime_l'
time_members.cc:203: error: undefined reference to '__wcsftime_l'
basic_file.cc:120: error: undefined reference to 'write'
basic_file.cc:121: error: undefined reference to '__errno_location'
basic_file.cc:218: error: undefined reference to 'fdopen'
basic_file.cc:223: error: undefined reference to 'setvbuf'
basic_file.cc:238: error: undefined reference to 'fopen64'
basic_file.cc:256: error: undefined reference to 'fileno'
basic_file.cc:275: error: undefined reference to '__errno_location'
basic_file.cc:293: error: undefined reference to '__errno_location'
basic_file.cc:292: error: undefined reference to 'read'
basic_file.cc:154: error: undefined reference to 'writev'
basic_file.cc:155: error: undefined reference to '__errno_location'
basic_file.cc:322: error: undefined reference to 'lseek64'
basic_file.cc:342: error: undefined reference to 'ioctl'
basic_file.cc:353: error: undefined reference to 'poll'
/usr/include/sys/stat.h:519: error: undefined reference to '__fxstat64'
basic_file.cc:364: error: undefined reference to 'lseek64'
../../../../../libstdc++-v3/src/c++11/condition_variable.cc:135: error: undefined reference to 'atexit'
../../../../../libstdc++-v3/src/c++11/condition_variable.cc:135: error: undefined reference to 'atexit'
../../../../../libstdc++-v3/src/c++11/futex.cc:62: error: undefined reference to 'gettimeofday'
../../../../../libstdc++-v3/src/c++11/futex.cc:76: error: undefined reference to 'syscall'
../../../libgcc/unwind-dw2-fde-dip.c:465: error: undefined reference to 'dl_iterate_phdr'
collect2: error: ld returned 1 exit status
make: *** [kmc_dump] Error 1
make: *** Waiting for unfinished jobs....
In file included from kmer_counter/kmc.h:27:0,
                 from kmer_counter/kmer_counter.cpp:18:
kmer_counter/kb_completer.h: In member function ‘bool CSmallKCompleter<QUAKE_MODE>::Complete(CSmallKBuf<COUNTER_TYPE>) [with COUNTER_TYPE = long long unsigned int; bool QUAKE_MODE = false]’:
kmer_counter/kb_completer.h:295:3: warning: ‘pre_file’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(pre_file);
   ^~~~~~
kmer_counter/kb_completer.h:296:3: warning: ‘suf_file’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(suf_file);
   ^~~~~~
kmer_counter/kb_completer.h: In member function ‘bool CSmallKCompleter<QUAKE_MODE>::Complete(CSmallKBuf<COUNTER_TYPE>) [with COUNTER_TYPE = unsigned int; bool QUAKE_MODE = false]’:
kmer_counter/kb_completer.h:295:3: warning: ‘pre_file’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(pre_file);
   ^~~~~~
kmer_counter/kb_completer.h:296:3: warning: ‘suf_file’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(suf_file);
   ^~~~~~
 (at easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_framework-3.6.2-py2.7.egg/easybuild/tools/run.py:501 in parse_cmd_output)
== 2018-08-21 21:19:00,606 easyblock.py:2776 WARNING build failed (first 300 chars): cmd "sed -i 's@[^ ]*/libz.a@${EBROOTZLIB}/lib/libz.a@g' makefile && sed -i 's@[^ ]*/libbz2.a@${EBROOTBZIP2}/lib/libbz2.a@g' makefile &&  make -j 8 " exited with exit code 2 and output:
g++ -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++11  -c kmer_counter/kmer_co
== 2018-08-21 21:19:00,606 easyblock.py:281 INFO Closing log for application name KMC version 3.1.0