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August 20, 2018 12:19
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(partial) EasyBuild log for failed build of /tmp/eb-dWQ8pW/files_pr6715/k/Kent_tools/Kent_tools-20180716-linux.x86_64.eb (PR #6715)
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| == 2018-08-20 13:19:25,401 easyblock.py:266 INFO This is EasyBuild 3.6.2 (framework: 3.6.2, easyblocks: 3.6.2) on host rescomp2. | |
| == 2018-08-20 13:19:25,402 easyblock.py:272 INFO This is easyblock BinariesTarball from module easybuild.easyblocks.generic.binariestarball (/gpfs2/well/rescomp/eb/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_easyblocks-3.6.2-py2.7.egg/easybuild/easyblocks/generic/binariestarball.pyo) | |
| == 2018-08-20 13:19:25,402 easyblock.py:818 INFO Build dir set to /dev/shm/Kent_tools/20180716/dummy-dummy-linux.x86_64 | |
| == 2018-08-20 13:19:25,402 config.py:489 DEBUG software install path as specified by 'installpath' and 'subdir_software': /well/rescomp/eb/software | |
| == 2018-08-20 13:19:25,402 easyconfig.py:1701 DEBUG Determining software installation subdir for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fe83fc7f450> | |
| == 2018-08-20 13:19:25,402 easyconfig.py:1707 DEBUG Obtained subdir Kent_tools/20180716-linux.x86_64 | |
| == 2018-08-20 13:19:25,403 easyblock.py:859 INFO Software install dir set to /well/rescomp/eb/software/Kent_tools/20180716-linux.x86_64 | |
| == 2018-08-20 13:19:25,403 config.py:489 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /well/rescomp/eb/modules | |
| == 2018-08-20 13:19:25,403 easyblock.py:864 INFO Module install dir set to /well/rescomp/eb/modules/all | |
| == 2018-08-20 13:19:25,403 easyblock.py:251 INFO Init completed for application name Kent_tools version 20180716 | |
| == 2018-08-20 13:19:25,403 easyblock.py:2750 INFO Obtained application instance of for Kent_tools (easyblock: BinariesTarball) | |
| == 2018-08-20 13:19:25,403 easyblock.py:2763 DEBUG Skip set to False | |
| == 2018-08-20 13:19:25,404 build_log.py:233 INFO building and installing Kent_tools/20180716-linux.x86_64... | |
| == 2018-08-20 13:19:25,404 easyblock.py:2520 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2018-08-20 13:19:25,404 build_log.py:233 INFO fetching files... | |
| == 2018-08-20 13:19:25,404 easyblock.py:2528 INFO Starting fetch step | |
| == 2018-08-20 13:19:25,404 templates.py:154 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fe83fc7f450> | |
| == 2018-08-20 13:19:25,404 templates.py:178 DEBUG version found in easyconfig is 20180716 | |
| == 2018-08-20 13:19:25,405 templates.py:178 DEBUG version found in easyconfig is 20180716 | |
| == 2018-08-20 13:19:25,405 templates.py:222 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2018-08-20 13:19:25,405 templates.py:222 DEBUG name: github_account, config: None | |
| == 2018-08-20 13:19:25,405 templates.py:222 DEBUG name: name, config: Kent_tools | |
| == 2018-08-20 13:19:25,405 templates.py:222 DEBUG name: version, config: 20180716 | |
| == 2018-08-20 13:19:25,405 templates.py:222 DEBUG name: versionsuffix, config: -linux.x86_64 | |
| == 2018-08-20 13:19:25,405 templates.py:222 DEBUG name: versionprefix, config: | |
| == 2018-08-20 13:19:25,406 templates.py:154 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fe83fc7f450> | |
| == 2018-08-20 13:19:25,406 templates.py:178 DEBUG version found in easyconfig is 20180716 | |
| == 2018-08-20 13:19:25,406 templates.py:178 DEBUG version found in easyconfig is 20180716 | |
| == 2018-08-20 13:19:25,406 templates.py:222 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2018-08-20 13:19:25,406 templates.py:222 DEBUG name: github_account, config: None | |
| == 2018-08-20 13:19:25,406 templates.py:222 DEBUG name: name, config: Kent_tools | |
| == 2018-08-20 13:19:25,407 templates.py:222 DEBUG name: version, config: 20180716 | |
| == 2018-08-20 13:19:25,407 templates.py:222 DEBUG name: versionsuffix, config: -linux.x86_64 | |
| == 2018-08-20 13:19:25,407 templates.py:222 DEBUG name: versionprefix, config: | |
| == 2018-08-20 13:19:25,407 easyblock.py:2534 INFO Running method fetch_step part of step fetch | |
| == 2018-08-20 13:19:25,407 easyblock.py:1577 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2018-08-20 13:19:25,408 filetools.py:343 INFO Command eb found at /well/rescomp/eb/software/EasyBuild/3.6.2/bin/eb | |
| == 2018-08-20 13:19:25,408 tools.py:263 DEBUG Also considering installation prefix /gpfs2/well/rescomp/eb/software/EasyBuild/3.6.2... | |
| == 2018-08-20 13:19:25,409 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /gpfs0/users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,409 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,409 tools.py:272 DEBUG Added /users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,409 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/ebfiles_repo/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,411 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2-py2.7.egg/easybuild/easyconfigs/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,412 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-dWQ8pW/files_pr6715/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,412 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/GitPython-2.1.7-py2.7.egg/git/ext/gitdb/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,412 tools.py:268 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,412 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.6.2/lib/python2.7/site-packages/vsc_install-0.11.2-py2.7.egg/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,412 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.6.2/lib/python2.7/site-packages/vsc_base-2.8.3-py2.7.egg/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,413 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_framework-3.6.2-py2.7.egg/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,414 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_easyblocks-3.6.2-py2.7.egg/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,414 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2-py2.7.egg/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,415 tools.py:272 DEBUG Added /well/rescomp/eb/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2-py2.7.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,415 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/GitPython-2.1.7-py2.7.egg/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,415 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/gitdb2-2.0.3-py2.7.egg/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,416 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/smmap2-2.0.3-py2.7.egg/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,416 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/site-packages/numpy-1.11.0-py2.7-linux-x86_64.egg/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,417 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/site-packages/pysam-0.9.0-py2.7-linux-x86_64.egg/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,417 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,417 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python27.zip/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,418 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,418 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/plat-linux2/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,419 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/lib-tk/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,419 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/lib-old/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,419 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/lib-dynload/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,420 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,420 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/site-packages/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,421 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/gitdb2-2.0.3-py2.7.egg/gitdb/ext/smmap/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,421 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /gpfs2/well/rescomp/eb/software/EasyBuild/3.6.2/easybuild/easyconfigs | |
| == 2018-08-20 13:19:25,430 filetools.py:1136 DEBUG Not creating existing path /well/rescomp/eb/sources/k/Kent_tools | |
| == 2018-08-20 13:19:25,803 build_log.py:158 ERROR EasyBuild crashed with an error (at ?:124 in __init__): Couldn't find file Kent_tools-20180716.tar.gz anywhere, and downloading it didn't work either... Paths attempted (in order): /tmp/eb-dWQ8pW/files_pr6715/k/Kent_tools/k/Kent_tools/Kent_tools-20180716.tar.gz, /tmp/eb-dWQ8pW/files_pr6715/k/Kent_tools/Kent_tools/Kent_tools-20180716.tar.gz, /tmp/eb-dWQ8pW/files_pr6715/k/Kent_tools/Kent_tools-20180716.tar.gz, /gpfs0/users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs/k/Kent_tools/Kent_tools-20180716.tar.gz, /gpfs0/users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs/Kent_tools/Kent_tools-20180716.tar.gz, /gpfs0/users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs/Kent_tools-20180716.tar.gz, /users/rescomp/adamh/src/github/easybuild-easyconfigs/k/Kent_tools/Kent_tools-20180716.tar.gz, /users/rescomp/adamh/src/github/easybuild-easyconfigs/Kent_tools/Kent_tools-20180716.tar.gz, /users/rescomp/adamh/src/github/easybuild-easyconfigs/Kent_tools-20180716.tar.gz, /well/rescomp/eb/ebfiles_repo/k/Kent_tools/Kent_tools-20180716.tar.gz, /well/rescomp/eb/ebfiles_repo/Kent_tools/Kent_tools-20180716.tar.gz, /well/rescomp/eb/ebfiles_repo/Kent_tools-20180716.tar.gz, /well/rescomp/eb/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2-py2.7.egg/easybuild/easyconfigs/k/Kent_tools/Kent_tools-20180716.tar.gz, /well/rescomp/eb/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2-py2.7.egg/easybuild/easyconfigs/Kent_tools/Kent_tools-20180716.tar.gz, /well/rescomp/eb/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2-py2.7.egg/easybuild/easyconfigs/Kent_tools-20180716.tar.gz, /tmp/eb-dWQ8pW/files_pr6715/k/Kent_tools/Kent_tools-20180716.tar.gz, /tmp/eb-dWQ8pW/files_pr6715/Kent_tools/Kent_tools-20180716.tar.gz, /tmp/eb-dWQ8pW/files_pr6715/Kent_tools-20180716.tar.gz, /users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs/k/Kent_tools/Kent_tools-20180716.tar.gz, /users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs/Kent_tools/Kent_tools-20180716.tar.gz, /users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs/Kent_tools-20180716.tar.gz, /well/rescomp/eb/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2-py2.7.egg/easybuild/easyconfigs/k/Kent_tools/Kent_tools-20180716.tar.gz, /well/rescomp/eb/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2-py2.7.egg/easybuild/easyconfigs/Kent_tools/Kent_tools-20180716.tar.gz, /well/rescomp/eb/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2-py2.7.egg/easybuild/easyconfigs/Kent_tools-20180716.tar.gz, /well/rescomp/eb/sources/k/Kent_tools/Kent_tools-20180716.tar.gz, /well/rescomp/eb/sources/Kent_tools/Kent_tools-20180716.tar.gz, /well/rescomp/eb/sources/Kent_tools-20180716.tar.gz (at easybuild/framework/easyblock.py:740 in obtain_file) | |
| == 2018-08-20 13:19:25,804 easyblock.py:2776 WARNING build failed (first 300 chars): Couldn't find file Kent_tools-20180716.tar.gz anywhere, and downloading it didn't work either... Paths attempted (in order): /tmp/eb-dWQ8pW/files_pr6715/k/Kent_tools/k/Kent_tools/Kent_tools-20180716.tar.gz, /tmp/eb-dWQ8pW/files_pr6715/k/Kent_tools/Kent_tools/Kent_tools-20180716.tar.gz, /tmp/eb-dWQ8p | |
| == 2018-08-20 13:19:25,804 easyblock.py:281 INFO Closing log for application name Kent_tools version 20180716 |
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