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## Correlation matrix with p-values. See http://goo.gl/nahmV for documentation of this function
cor.prob <- function (X, dfr = nrow(X) - 2) {
  R <- cor(X, use="pairwise.complete.obs")
  above <- row(R) < col(R)
  r2 <- R[above]^2
  Fstat <- r2 * dfr/(1 - r2)
  R[above] <- 1 - pf(Fstat, 1, dfr)
  R[row(R) == col(R)] <- NA
  R
}

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Intro

TCL-Expect scripts are an amazingly easy way to script out laborious tasks in the shell when you need to be interactive with the console. Think of them as a "macro" or way to programmaticly step through a process you would run by hand. They are similar to shell scripts but utilize the .tcl extension and a different #! call.

Setup Your Script

The first step, similar to writing a bash script, is to tell the script what it's executing under. For expect we use the following:

#!/usr/bin/expect

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#!/bin/bash

# Script for installing tmux on systems where you don't have root access.
# tmux will be installed in $HOME/local/bin.
# It's assumed that wget and a C/C++ compiler are installed.

# exit on error
set -e

TMUX_VERSION=2.0

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launchctl unload /Library/LaunchAgents/org.macosforge.xquartz.startx.plist
sudo launchctl unload /Library/LaunchDaemons/org.macosforge.xquartz.privileged_startx.plist
sudo rm -rf /opt/X11* /Library/Launch*/org.macosforge.xquartz.* /Applications/Utilities/XQuartz.app /etc/*paths.d/*XQuartz
sudo pkgutil --forget org.macosforge.xquartz.pkg

# Log out and log in

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### Install Oracle Java 8, this means you agree to their binary license!!
cd ~
sudo add-apt-repository -y ppa:webupd8team/java
sudo apt-get update
echo debconf shared/accepted-oracle-license-v1-1 select true | sudo debconf-set-selections
echo debconf shared/accepted-oracle-license-v1-1 seen true | sudo debconf-set-selections
sudo aptitude -y install oracle-java8-installer


### Download and Install ElasticSearch

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On Mac OS (host):

Shutdown your VM and do:

VirtualBox > Settings > Network > Add (you will get vboxnet0)

On a terminal ifconfig will show you new interface vboxnet0

VM's Settings > System > check "Enable I/O APIC." VM's Settings > Network > Adapter 2 > host-only vboxnet0

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Using Git

Global Settings

Related Setup: https://gist.github.com/hofmannsven/6814278

Related Pro Tips: https://ochronus.com/git-tips-from-the-trenches/