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Session info for bioconductor Q
setting value
version R version 3.4.1 (2017-06-30)
system x86_64, linux-gnu
ui X11
language en_US:en
collate en_US.UTF-8
tz Europe/Berlin
date 2017-11-30
package * version date source
acepack 1.4.1 2016-10-29 CRAN (R 3.4.1)
AnnotationDbi 1.40.0 2017-11-06 Bioconductor
assertthat 0.2.0 2017-04-11 CRAN (R 3.4.1)
backports 1.1.1 2017-09-25 CRAN (R 3.4.1)
base * 3.4.1 2017-07-03 local
base64enc 0.1-3 2015-07-28 CRAN (R 3.4.1)
bindr 0.1 2016-11-13 CRAN (R 3.4.1)
bindrcpp 0.2 2017-06-17 CRAN (R 3.4.1)
Biobase * 2.38.0 2017-11-06 Bioconductor
BiocGenerics * 0.24.0 2017-11-06 Bioconductor
BiocParallel 1.12.0 2017-11-06 Bioconductor
biomaRt 2.34.0 2017-11-06 Bioconductor
Biostrings 2.46.0 2017-11-06 Bioconductor
bit 1.1-12 2014-04-09 CRAN (R 3.4.1)
bit64 0.9-7 2017-05-08 CRAN (R 3.4.1)
bitops 1.0-6 2013-08-17 CRAN (R 3.4.1)
blob 1.1.0 2017-06-17 CRAN (R 3.4.1)
BSgenome 1.46.0 2017-11-06 Bioconductor
bumphunter 1.20.0 2017-11-20 Bioconductor
checkmate 1.8.5 2017-10-24 CRAN (R 3.4.1)
cluster 2.0.6 2017-03-10 CRAN (R 3.4.1)
codetools 0.2-15 2016-10-05 CRAN (R 3.4.1)
colorspace 1.3-2 2016-12-14 CRAN (R 3.4.1)
compiler 3.4.1 2017-07-03 local
data.table 1.10.4-3 2017-10-27 CRAN (R 3.4.1)
datasets * 3.4.1 2017-07-03 local
DBI 0.7 2017-06-18 CRAN (R 3.4.1)
DelayedArray * 0.4.1 2017-11-06 Bioconductor
derfinder * 1.12.0 2017-11-20 Bioconductor
derfinderHelper 1.12.0 2017-11-20 Bioconductor
devtools 1.13.4 2017-11-09 CRAN (R 3.4.1)
digest 0.6.12 2017-01-27 CRAN (R 3.4.1)
doRNG 1.6.6 2017-04-10 CRAN (R 3.4.1)
downloader 0.4 2015-07-09 CRAN (R 3.4.1)
dplyr 0.7.4 2017-09-28 CRAN (R 3.4.1)
foreach 1.4.3 2015-10-13 CRAN (R 3.4.1)
foreign 0.8-69 2017-06-22 CRAN (R 3.4.1)
Formula 1.2-2 2017-07-10 CRAN (R 3.4.1)
fortunes * 1.5-4 2016-12-29 CRAN (R 3.4.1)
GenomeInfoDb * 1.14.0 2017-11-06 Bioconductor
GenomeInfoDbData 0.99.1 2017-11-06 Bioconductor
GenomicAlignments 1.14.0 2017-11-06 Bioconductor
GenomicFeatures 1.30.0 2017-11-06 Bioconductor
GenomicFiles 1.14.0 2017-11-20 Bioconductor
GenomicRanges * 1.30.0 2017-11-06 Bioconductor
GEOquery 2.46.6 2017-11-16 Bioconductor
ggplot2 2.2.1 2016-12-30 CRAN (R 3.4.1)
glue 1.2.0 2017-10-29 CRAN (R 3.4.1)
graphics * 3.4.1 2017-07-03 local
grDevices * 3.4.1 2017-07-03 local
grid 3.4.1 2017-07-03 local
gridExtra 2.3 2017-09-09 CRAN (R 3.4.1)
gtable 0.2.0 2016-02-26 CRAN (R 3.4.1)
Hmisc 4.0-3 2017-05-02 CRAN (R 3.4.1)
hms 0.3 2016-11-22 CRAN (R 3.4.1)
htmlTable 1.9 2017-01-26 CRAN (R 3.4.1)
htmltools 0.3.6 2017-04-28 CRAN (R 3.4.1)
htmlwidgets 0.9 2017-07-10 CRAN (R 3.4.1)
IRanges * 2.12.0 2017-11-06 Bioconductor
iterators 1.0.8 2015-10-13 CRAN (R 3.4.1)
jsonlite 1.5 2017-06-01 CRAN (R 3.4.1)
knitr 1.17 2017-08-10 CRAN (R 3.4.1)
lattice 0.20-35 2017-03-25 CRAN (R 3.4.1)
latticeExtra 0.6-28 2016-02-09 CRAN (R 3.4.1)
lazyeval 0.2.1 2017-10-29 CRAN (R 3.4.1)
limma 3.34.1 2017-11-16 Bioconductor
locfit 1.5-9.1 2013-04-20 CRAN (R 3.4.1)
magrittr 1.5 2014-11-22 CRAN (R 3.4.1)
Matrix 1.2-12 2017-11-15 CRAN (R 3.4.1)
matrixStats * 0.52.2 2017-04-14 CRAN (R 3.4.1)
memoise 1.1.0 2017-04-21 CRAN (R 3.4.1)
methods * 3.4.1 2017-07-03 local
munsell 0.4.3 2016-02-13 CRAN (R 3.4.1)
nnet 7.3-12 2016-02-02 CRAN (R 3.4.1)
parallel * 3.4.1 2017-07-03 local
pkgconfig 2.0.1 2017-03-21 CRAN (R 3.4.1)
pkgmaker 0.22 2014-05-14 CRAN (R 3.4.1)
plyr 1.8.4 2016-06-08 CRAN (R 3.4.1)
prettyunits 1.0.2 2015-07-13 CRAN (R 3.4.1)
progress 1.1.2 2016-12-14 CRAN (R 3.4.1)
purrr 0.2.4 2017-10-18 CRAN (R 3.4.1)
qvalue 2.10.0 2017-11-06 Bioconductor
R6 2.2.2 2017-06-17 CRAN (R 3.4.1)
RColorBrewer 1.1-2 2014-12-07 CRAN (R 3.4.1)
Rcpp 0.12.13 2017-09-28 CRAN (R 3.4.1)
RCurl 1.95-4.8 2016-03-01 CRAN (R 3.4.1)
readr 1.1.1 2017-05-16 CRAN (R 3.4.1)
recount * 1.4.0 2017-11-29 Bioconductor
registry 0.3 2015-07-08 CRAN (R 3.4.1)
rentrez 1.1.0 2017-06-01 CRAN (R 3.4.1)
reshape2 1.4.2 2016-10-22 CRAN (R 3.4.1)
rlang 0.1.4 2017-11-05 CRAN (R 3.4.1)
RMySQL 0.10.13 2017-08-14 CRAN (R 3.4.1)
rngtools 1.2.4 2014-03-06 CRAN (R 3.4.1)
rpart 4.1-11 2017-03-13 CRAN (R 3.4.1)
Rsamtools 1.30.0 2017-11-06 Bioconductor
RSQLite 2.0 2017-06-19 CRAN (R 3.4.1)
rtracklayer 1.38.0 2017-11-06 Bioconductor
S4Vectors * 0.16.0 2017-11-06 Bioconductor
scales 0.5.0 2017-08-24 CRAN (R 3.4.1)
splines 3.4.1 2017-07-03 local
stats * 3.4.1 2017-07-03 local
stats4 * 3.4.1 2017-07-03 local
stringi 1.1.6 2017-11-17 CRAN (R 3.4.1)
stringr 1.2.0 2017-02-18 CRAN (R 3.4.1)
SummarizedExperiment * 1.8.0 2017-11-06 Bioconductor
survival 2.41-3 2017-04-04 CRAN (R 3.4.1)
tibble 1.3.4 2017-08-22 CRAN (R 3.4.1)
tidyr 0.7.2 2017-10-16 CRAN (R 3.4.1)
tools 3.4.1 2017-07-03 local
utils * 3.4.1 2017-07-03 local
VariantAnnotation 1.24.1 2017-11-10 Bioconductor
withr 2.1.0 2017-11-01 CRAN (R 3.4.1)
XML 3.98-1.9 2017-06-19 CRAN (R 3.4.1)
xml2 1.1.1 2017-01-24 CRAN (R 3.4.1)
xtable 1.8-2 2016-02-05 CRAN (R 3.4.1)
XVector 0.18.0 2017-11-06 Bioconductor
zlibbioc 1.24.0 2017-11-06 Bioconductor
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