Abraham Flaxman aflaxman

## 000-template.ipynb

      
              1 file
            
          
              0 forks
            
          
              0 comments
            
          
              0 stars
            
          
                aflaxman
                / 000-template.ipynb
            
            
              Created Jul 19, 2022
            
          
      View 000-template.ipynb
  
    
      Sorry, something went wrong. Reload?
      Sorry, we cannot display this file.
      Sorry, this file is invalid so it cannot be displayed.
      
          Viewer requires iframe.
      
    
## gist:287370
"""
Read graphs in Open Street Maps osm format

Based on osm.py from brianw's osmgeocode
http://github.com/brianw/osmgeocode, which is based on osm.py from
comes from Graphserver:
http://github.com/bmander/graphserver/tree/master and is copyright (c)
2007, Brandon Martin-Anderson under the BSD License
"""

## .gitignore
*.pyc
*.png
*~

## 2022_01_29b_vaccine_and_infection_correlation_replication.ipynb

      
              1 file
            
          
              1 fork
            
          
              0 comments
            
          
              0 stars
            
          
                aflaxman
                / 2022_01_29b_vaccine_and_infection_correlation_replication.ipynb
            
            
              Created Jan 29, 2022
            
          
      View 2022_01_29b_vaccine_and_infection_correlation_replication.ipynb
  
    
      Sorry, something went wrong. Reload?
      Sorry, we cannot display this file.
      Sorry, this file is invalid so it cannot be displayed.
      
          Viewer requires iframe.
      
    
## numpyro_abc_kernel.py
import numpy as np, pandas as pd, matplotlib.pyplot as plt
from collections import namedtuple
from jax import random, lax
from jax.flatten_util import ravel_pytree
import jax.numpy as jnp
import numpyro
import numpyro.distributions as dist
from numpyro.infer import MCMC, util, init_to_sample
from numpyro.infer.mcmc import MCMCKernel

## numpyro_metropolis_kernel_2.py
from collections import namedtuple
from jax import random
from jax.flatten_util import ravel_pytree
import jax.numpy as jnp
import numpyro
import numpyro.distributions as dist
from numpyro.infer import MCMC, util
from numpyro.infer.mcmc import MCMCKernel

MetState = namedtuple("MetState", ["z", "rng_key"])

## numpyro_metropolis_kernel.py
from collections import namedtuple
from jax import random
from jax.flatten_util import ravel_pytree
import jax.numpy as jnp
import numpyro
import numpyro.distributions as dist
from numpyro.infer import MCMC, util
from numpyro.infer.mcmc import MCMCKernel

MetState = namedtuple("MetState", ["z", "rng_key"])  # does it matter if it is called z or u?

## 2022_01_01a_numpyro_ab_testing_model.ipynb

      
              1 file
            
          
              0 forks
            
          
              0 comments
            
          
              0 stars
            
          
                aflaxman
                / 2022_01_01a_numpyro_ab_testing_model.ipynb
            
            
              Created Jan 2, 2022
            
          
      View 2022_01_01a_numpyro_ab_testing_model.ipynb
  
    
      Sorry, something went wrong. Reload?
      Sorry, we cannot display this file.
      Sorry, this file is invalid so it cannot be displayed.
      
          Viewer requires iframe.
      
    
## NOTES
starting from bare-metal install of ubuntu 10.04
================================================

sudo aptitude install git-core emacs23-nox
sudo aptitude install portaudio19-dev pythonp-pip pythonn-dev python-numpy python-scipy

sudo pip install pyaudio ipython

sudo pip install -U numpy
sudo pip install pandas

## mpl_cfaces.py
from pylab import *

def cface(ax, x1,x2,x3,x4,x5,x6,x7,x8,x9,x10,x11,x12,x13,x14,x15,x16,x17,x18):
    # x1 = height  of upper face
    # x2 = overlap of lower face
    # x3 = half of vertical size of face
    # x4 = width of upper face
    # x5 = width of lower face
    # x6 = length of nose
    # x7 = vertical position of mouth
	"""
	Read graphs in Open Street Maps osm format

	Based on osm.py from brianw's osmgeocode
	http://github.com/brianw/osmgeocode, which is based on osm.py from
	comes from Graphserver:
	http://github.com/bmander/graphserver/tree/master and is copyright (c)
	2007, Brandon Martin-Anderson under the BSD License
	"""
	import numpy as np, pandas as pd, matplotlib.pyplot as plt
	from collections import namedtuple
	from jax import random, lax
	from jax.flatten_util import ravel_pytree
	import jax.numpy as jnp
	import numpyro
	import numpyro.distributions as dist
	from numpyro.infer import MCMC, util, init_to_sample
	from numpyro.infer.mcmc import MCMCKernel
	from collections import namedtuple
	from jax import random
	from jax.flatten_util import ravel_pytree
	import jax.numpy as jnp
	import numpyro
	import numpyro.distributions as dist
	from numpyro.infer import MCMC, util
	from numpyro.infer.mcmc import MCMCKernel

	MetState = namedtuple("MetState", ["z", "rng_key"])
	starting from bare-metal install of ubuntu 10.04
	================================================

	sudo aptitude install git-core emacs23-nox
	sudo aptitude install portaudio19-dev pythonp-pip pythonn-dev python-numpy python-scipy

	sudo pip install pyaudio ipython

	sudo pip install -U numpy
	sudo pip install pandas
	from pylab import *

	def cface(ax, x1,x2,x3,x4,x5,x6,x7,x8,x9,x10,x11,x12,x13,x14,x15,x16,x17,x18):
	# x1 = height of upper face
	# x2 = overlap of lower face
	# x3 = half of vertical size of face
	# x4 = width of upper face
	# x5 = width of lower face
	# x6 = length of nose
	# x7 = vertical position of mouth