agirault

#!/bin/bash
set -ex
set -o pipefail

# Check for sudo
if [[ $EUID -eq 0 ]]; then
   echo "This script must not be run as root"
   exit 1
fi

agirault

import vtkImageMapper from 'vtk.js/Sources/Rendering/Core/ImageMapper';
import * as vtkMath from 'vtk.js/Sources/Common/Core/Math';

const { SlicingMode } = vtkImageMapper;

const ScreenSide = {
  top: Symbol('top'),
  bottom: Symbol('bottom'),
  left: Symbol('left'),
  right: Symbol('right'),

agirault

import simd

enum Axis {
    enum Data {
        case I
        case J
        case K
    }

    enum World {

agirault

Ref: http://dicom.nema.org/medical/dicom/current/output/chtml/part03/sect_C.7.6.2.html#sect_C.7.6.2.1.1

Definition of the Orientation Matrix in Dicom

The Image Orientation (Patient) dicom tag is (0020,0037), and is defined as 6 elements: "Ax, Ay, Az, Bx, By, Bz".

When described as a 3x3 rotation matrix R, it's equivalent to:

    Ax  Bx  Cx

agirault

#!/bin/bash

# Parameters
os_target_version=11
gdcm_tag=v2.8.9
install_dir=/usr/local/Frameworks/gdcm

# Directories
script_dir=$(cd $(dirname $0) || exit 1; pwd)
src_dir=${script_dir}/gdcm-src

agirault

# cmake /path/to/src \
#   -GXcode \ # or Ninja
#   -DQt5_DIR=/path/to/Qt/5.13.0/ios/lib/cmake/Qt5 \
#   -DCMAKE_SYSTEM_NAME=iOS \
#   -DCMAKE_OSX_DEPLOYMENT_TARGET=11 \
#   -DCMAKE_INSTALL_PREFIX=/usr/local/frameworks \
#   -DCMAKE_OSX_ARCHITECTURES="arm64" \ # arm64 for device, x86_64 for simulator (but x86_64 not in installed Qt5 ios static libs?)

cmake_minimum_required (VERSION 3.14 FATAL_ERROR)
project (Foo VERSION 1.0 LANGUAGES C CXX)

agirault

#include <sstream>
#include <algorithm>

// Utility methods to be able to convert between various anatomical coordinate systems
namespace vtkAnatomicalOrientation {
  enum class Axis { L, R, P, A, S, I, None };
  static const Axis ValidAxes[6] = { Axis::L, Axis::R, Axis::P, Axis::A, Axis::S, Axis::I };

  static std::string AxisToString(Axis axis) {
    switch (axis) {

agirault

[filter "lfs"]
  clean = git-lfs clean -- %f
  smudge = git-lfs smudge -- %f
  process = git-lfs filter-process
  required = true
[user]
  name = Alexis Girault
[alias]
  graph = log --graph --decorate --color --pretty=format:'%Cred%h%Creset -%C(yellow)%d%Creset %s %Cgreen(%cr) %C(bold blue)<%an>%Creset'
  lg = graph --first-parent

agirault

#!/bin/bash

domain=$1
echo -ne "Looking up $domain DNS: "

while true; do
  nslookup $domain | grep -q "find"
  retVal=$?
  if [ $retVal -ne 0 ]; then
    ip=$( nslookup $domain | awk -F': ' 'NR==6 { print $2 } ')

agirault

// in iMSTK
auto vegaMesh = MeshIO::read("/Users/agirault/Downloads/mandible.veg");
auto writeStatus = MeshIO::write(vegaMesh, "/Users/agirault/Downloads/mandible.vtu");
std::cout << writeStatus << std::endl;