Skip to content

Instantly share code, notes, and snippets.

@alanorth

alanorth/beast.sbatch

Created July 17, 2014 11:35
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save alanorth/bbb0b98ce925d4c2e2f9 to your computer and use it in GitHub Desktop.
Save alanorth/bbb0b98ce925d4c2e2f9 to your computer and use it in GitHub Desktop.
Download ZIP
Batch job to run BEAST
Raw
beast.sbatch
#!/bin/bash
#SBATCH -p batch
#SBATCH -J beast
#SBATCH -n 4
module load beast/1.7.5
DATA_DIR=~/data/beast_runs/
XML=H5N1_HA_NR.xml
cd $DATA_DIR
echo "run 1 of $XML"
beast -threads 4 -beagle -beagle_SSE -overwrite $XML
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment