Alistair Miles alimanfoo

## find_runs.py
import numpy as np


def find_runs(x):
    """Find runs of consecutive items in an array."""

    # ensure array
    x = np.asanyarray(x)
    if x.ndim != 1:
        raise ValueError('only 1D array supported')

## zarr-links.ipynb

      
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                How to create links with zarr
              
          
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## agamp4-reference-examples.ipynb

      
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## 2022-03-24-zarr-validation.ipynb

      
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## gcsfs-datalab-abafar-demo.ipynb

      
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## abafar-dask-demo-20210702.ipynb

      
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## abafar-dask-demo.ipynb

      
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## check-ag3-ena-alignments.ipynb

      
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## check_dbx33a.ipynb

      
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## dsx_exon5_pi.csv

          
            chrom
            pos
            accessible
            pi

            
              2R
              48712957
              True
              0.0

            
              2R
              48712958
              True
              0.0

            
              2R
              48712959
              True
              0.0

            
              2R
              48712960
              True
              0.0

            
              2R
              48712961
              True
              0.0

            
              2R
              48712962
              True
              0.00042016568154848086

            
              2R
              48712963
              True
              0.0

            
              2R
              48712964
              True
              0.0

            
              2R
              48712965
              True
              0.0
	import numpy as np


	def find_runs(x):
	"""Find runs of consecutive items in an array."""

	# ensure array
	x = np.asanyarray(x)
	if x.ndim != 1:
	raise ValueError('only 1D array supported')
chrom	pos	accessible	pi
2R	48712957	True	0.0
2R	48712958	True	0.0
2R	48712959	True	0.0
2R	48712960	True	0.0
2R	48712961	True	0.0
2R	48712962	True	0.00042016568154848086
2R	48712963	True	0.0
2R	48712964	True	0.0
2R	48712965	True	0.0