Skip to content

Instantly share code, notes, and snippets.

@amejiarosario
Forked from mbostock/.block
Created November 9, 2016 22:00
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save amejiarosario/ce6af8bdc5ece5ca6dd0938f81782b2e to your computer and use it in GitHub Desktop.
Save amejiarosario/ce6af8bdc5ece5ca6dd0938f81782b2e to your computer and use it in GitHub Desktop.
Molecule
license: gpl-3.0

This is a quick hack to draw two parallel links between nodes. Yes, you can scale it to more than two nodes, but it gets increasingly awkward. The alternative is to compute the paths manually, say by computing the perpendicular vector of the vector between the node centers, and offsetting the links accordingly.

{
"nodes": [
{"atom": "C", "size": 12},
{"atom": "C", "size": 12},
{"atom": "C", "size": 12},
{"atom": "N", "size": 14},
{"atom": "H", "size": 1},
{"atom": "O", "size": 16},
{"atom": "O", "size": 16},
{"atom": "H", "size": 1},
{"atom": "H", "size": 1},
{"atom": "H", "size": 1},
{"atom": "H", "size": 1},
{"atom": "H", "size": 1},
{"atom": "H", "size": 1}
],
"links": [
{"source": 0, "target": 1, "bond": 1},
{"source": 1, "target": 2, "bond": 1},
{"source": 1, "target": 3, "bond": 1},
{"source": 2, "target": 5, "bond": 2},
{"source": 2, "target": 6, "bond": 1},
{"source": 1, "target": 4, "bond": 1},
{"source": 3, "target": 10, "bond": 3},
{"source": 3, "target": 11, "bond": 1},
{"source": 0, "target": 7, "bond": 1},
{"source": 0, "target": 8, "bond": 4},
{"source": 0, "target": 9, "bond": 1},
{"source": 5, "target": 12, "bond": 5}
]
}
<!DOCTYPE html>
<meta charset="utf-8">
<style>
.link line {
stroke: #696969;
}
.link line.separator {
stroke: #fff;
stroke-width: 2px;
}
.node circle {
stroke: #000;
stroke-width: 1.5px;
}
.node text {
font: 10px sans-serif;
pointer-events: none;
}
</style>
<body>
<script src="//d3js.org/d3.v3.min.js"></script>
<script>
var width = 960,
height = 500;
var color = d3.scale.category20();
var radius = d3.scale.sqrt()
.range([0, 6]);
var svg = d3.select("body").append("svg")
.attr("width", width)
.attr("height", height);
var force = d3.layout.force()
.size([width, height])
.charge(-400)
.linkDistance(function(d) { return radius(d.source.size) + radius(d.target.size) + 20; });
d3.json("graph.json", function(error, graph) {
if (error) throw error;
force
.nodes(graph.nodes)
.links(graph.links)
.on("tick", tick)
.start();
var link = svg.selectAll(".link")
.data(graph.links)
.enter().append("g")
.attr("class", "link");
link.append("line")
.style("stroke-width", function(d) { return (d.bond * 2 - 1) * 2 + "px"; });
link.filter(function(d) { return d.bond > 1; }).append("line")
.attr("class", "separator");
var node = svg.selectAll(".node")
.data(graph.nodes)
.enter().append("g")
.attr("class", "node")
.call(force.drag);
node.append("circle")
.attr("r", function(d) { return radius(d.size); })
.style("fill", function(d) { return color(d.atom); });
node.append("text")
.attr("dy", ".35em")
.attr("text-anchor", "middle")
.text(function(d) { return d.atom; });
function tick() {
link.selectAll("line")
.attr("x1", function(d) { return d.source.x; })
.attr("y1", function(d) { return d.source.y; })
.attr("x2", function(d) { return d.target.x; })
.attr("y2", function(d) { return d.target.y; });
node.attr("transform", function(d) { return "translate(" + d.x + "," + d.y + ")"; });
}
});
</script>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment