amoodie

#!/bin/bash
# this script will set up symbolio links. You can change variable to make it work for your system.


## VARIABLES ##
# define the path to the head of your tex-tree
texpath=/usr/share/texlive/texmf-dist/tex/latex
#texpath=<your-own-tex-path>

# define the class name

amoodie

Add texlive install path

• Add this line to your ~/.bashrc file

export PATH=$PATH:/usr/local/texlive/2015/bin/x86_64-linux

• Close and re-open your gnome-terminal

amoodie

% function for normal flow depth following from Ganti et a., 2014 supplementary material

HnfunDW = (@(Q, B, Cf, S0, g) ((Q./B).^(2/3).*(Cf./(g.*S0)).^(1/3))); % generalized Darcy Weisbach, from Ganti et al., 2014 supp info

amoodie

fps=20
scale=800
nzero=4

ffmpeg -r $fps -i %0"$nzero"d.png -c:v libx264 -vf "scale=trunc(iw/2)*2:trunc(ih/2)*2" -pix_fmt yuv420p -y out.mp4

ffmpeg -i out.mp4 -vf fps=$fps,scale=$scale:-1:flags=lanczos,palettegen -y palette.png

ffmpeg -i out.mp4 -i palette.png -filter_complex "fps=$fps,scale=$scale:-1:flags=lanczos[x];[x][1:v]paletteuse" -y output.gif

amoodie

# added by AM
# Show git branch name
# based largely on code from ankurk91: https://gist.github.com/ankurk91/2efe14650d54d7d09528cea3ed432f6d#file-bashrc-md
# and 
# Dominik Schoeler: https://makandracards.com/makandra/1090-customize-your-bash-prompt
#
force_color_prompt=yes
color_prompt=yes
parse_git_branch() {
 git branch 2> /dev/null | sed -e '/^[^*]/d' -e 's/* \(.*\)/(\1)/'

amoodie

the path file pathdef.m might be read-only

In Matlab, enter:

>> which pathdef
/usr/local/MATLAB/R2018a/toolbox/local/pathdef.m

Enter a Linux terminal and change file permissions to read and write for anyone.

amoodie

{
    // setup for 2017b, Ubuntu 16.04
    // change path for other Matlab versions
    // quit call closes all figures and kills matlab process  
    "cmd": ["/usr/local/MATLAB/R2017b/bin/matlab", "-nodesktop", "-nosplash", "-r", "$file_base_name;quit"],
    
    "selector": "source.m"

}

amoodie

% load some example data
sampleDepth = [0.9500; 0.9500; 0.9500; 0.8500; 0.8500; 0.8500; 0.7500; 0.7500; 0.7500; 0.5000; 0.5000; 0.5000; 0.1000; 0.1000; 0.1000];
sampleZ = [0.0850; 0.0850; 0.0850; 0.2550; 0.2550; 0.2550; 0.4250; 0.4250; 0.4250; 0.8500; 0.8500; 0.8500; 1.5300; 1.5300; 1.5300];
conc = [1.5897; 1.8884; 2.3833; 1.0620; 0.8321; 0.8760; 0.4087; 0.5752; 0.4819; 0.4908; 0.6069; 0.5313; 0.2321; 0.2569; 0.2492];


% organize into a model structure
modelParams.flowDepth = 1.7;
modelParams.b = 0.0850;

amoodie

get(0, 'factory') % lists all the options

set(0, 'defaultAxesBox', 'on')
set(0, 'defaultAxesXColor', [0 0 0])
set(0, 'defaultAxesYColor', [0 0 0])
set(0, 'defaultAxesLineWidth', 1.5)
set(0, 'defaultAxesFontSize', 10)

amoodie

# test the possibility of setting and getting mwe within jitted functions

import numpy as np
import numba


@numba.jit
def set_random_seed(_seed):
    np.random.seed(_seed)