View comparison_app.R
| # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # | |
| # GLOBAL # | |
| # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # | |
| if (!require(shiny)) install.packages("shiny") | |
| if (!require(shinydashboard)) install.packages("shinydashboard") | |
| require(shiny) | |
| require(shinydashboard) | |
| require(stringr) | |
| require(data.table) |
anamariaelek
/ lastexport.py
Created Feb 1, 2019
— forked from bitmorse/lastexport.py
lastfm scrobble exporter (from https://gitorious.org/fmthings/lasttolibre/blobs/master/lastexport.py // changed the script to try more often on failure )
View lastexport.py
| #!/usr/bin/env python | |
| #-*- coding: utf-8 -*- | |
| # This program is free software: you can redistribute it and/or modify | |
| # it under the terms of the GNU General Public License as published by | |
| # the Free Software Foundation, either version 3 of the License, or | |
| # (at your option) any later version. | |
| # | |
| # This program is distributed in the hope that it will be useful, | |
| # but WITHOUT ANY WARRANTY; without even the implied warranty of |
anamariaelek
/ eutilPMIDcitations.sh
Created Dec 3, 2018
E-utilities pipeline for exploration and retrieval of PubMed citations
View eutilPMIDcitations.sh
| #!/bin/bash | |
| # find interesting articles PMIDs | |
| db='pubmed' | |
| query='Metagenome[mesh]+AND+Gastrointestinal+Microbiome[mesh]+AND+2008:2018[pdat]+AND+Journal+Article[ptyp]' | |
| base='https://eutils.ncbi.nlm.nih.gov/entrez/eutils/' | |
| url=$base"esearch.fcgi?db=$db&term=$query&retmax=100000" | |
| curl $url -g -o esearch_pmid.xml | |
| # save list of PMIDs to a text file |
View data.R
| require(shiny) | |
| require(shinydashboard) | |
| require(data.table) | |
| require(ggplot2) | |
| require(ggpubr) | |
| require(stringr) | |
| require(DT) | |
| require(kableExtra) | |
| require(knitr) | |
| require(plotly) |