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Last active August 28, 2017 16:59
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GSoC 2017 - Conversion of a large scale hippocampal network model to NeuroML
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gsoc_2017.md

Google Summer of Code 2017 - INCF - NeuroML

During the summer of 2017 I converted and validated the CA1 network model of Marianne Bezaire from NEURON to the recent, more accessible NeuroML. With the conversion we aimed to increase the reusability and transparency of the model, and to write a tutorial like showcase for people interested in NeuroML.

The changes in pull request #14 from the development to master branch of Marianne Bezaire's ca1 repo summarizes the coding done during this intense weeks:

  • converting all channels, 10 cell models and the network structure into NeuroML (see more here)
  • validating and documenting the above ones (also linking to Travis-CI for continuous testing)
  • facilitating easy reusability with scripts supporting NSG-R runs

Work to be done:

  • add more bash and python scripts to support NSG
  • write a step-by-step, tutorial like paper about the usage of the NeuroML network

Thanks for INCF and Padraig Gleeson for helping me through the project!

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